Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99908 * 2 1 4 4 H 1.09000 * 109.54687 * 310.10808 * 3 2 1 5 5 C 1.53102 * 109.50857 * 190.00310 * 3 2 1 6 6 N 1.47006 * 109.26053 * 183.21620 * 5 3 2 7 7 C 1.46903 * 111.00196 * 182.38896 * 6 5 3 8 8 C 1.50703 * 109.47327 * 170.32015 * 7 6 5 9 9 C 1.38634 * 119.74593 * 269.72634 * 8 7 6 10 10 C 1.37626 * 120.24573 * 179.75798 * 9 8 7 11 11 C 1.40713 * 119.74328 * 0.54032 * 10 9 8 12 12 C 1.41388 * 120.24363 * 179.74273 * 11 10 9 13 13 H 1.08004 * 120.00500 * 150.21826 * 12 11 10 14 14 C 1.39947 * 120.00024 * 330.21355 * 12 11 10 15 15 N 1.30823 * 119.99696 * 161.72905 * 14 12 11 16 16 Si 1.86803 * 119.99933 * 341.72684 * 14 12 11 17 17 H 1.48495 * 109.46890 * 95.41211 * 16 14 12 18 18 H 1.48503 * 109.46903 * 215.41161 * 16 14 12 19 19 H 1.48493 * 109.46839 * 335.41152 * 16 14 12 20 20 C 1.40721 * 119.51249 * 359.71356 * 11 10 9 21 21 C 1.37622 * 119.74354 * 0.02562 * 20 11 10 22 22 C 1.47011 * 110.75309 * 58.61497 * 6 5 3 23 23 C 1.53093 * 109.29611 * 301.36348 * 22 6 5 24 24 O 1.43017 * 109.50887 * 70.21914 * 3 2 1 25 25 H 1.08997 * 109.46736 * 299.99799 * 1 2 3 26 26 H 1.08991 * 109.47405 * 60.00137 * 1 2 3 27 27 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.50488 * 63.28021 * 5 3 2 29 29 H 1.09002 * 109.53702 * 303.17466 * 5 3 2 30 30 H 1.08999 * 109.46912 * 290.32346 * 7 6 5 31 31 H 1.09004 * 109.46575 * 50.31982 * 7 6 5 32 32 H 1.08003 * 119.87881 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.12715 * 180.27685 * 10 9 8 34 34 H 0.97003 * 119.99637 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12716 * 180.02562 * 20 11 10 36 36 H 1.07999 * 119.87695 * 179.97438 * 21 20 11 37 37 H 1.09008 * 109.50776 * 61.31899 * 22 6 5 38 38 H 1.09001 * 109.50834 * 181.40436 * 22 6 5 39 39 H 1.09001 * 109.51481 * 176.80612 * 23 22 6 40 40 H 1.09007 * 109.50894 * 296.93490 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5540 1.9077 -0.7856 5 6 3.5165 1.1945 -0.2507 6 7 4.1208 2.5323 -0.1730 7 6 5.5597 2.4777 -0.4642 8 6 6.0962 3.8785 -0.6099 9 6 6.1066 4.4848 -1.8566 10 6 6.5896 5.7654 -2.0006 11 6 7.0846 6.4552 -0.8784 12 6 7.5884 7.7692 -1.0153 13 1 7.5187 8.4629 -0.1905 14 6 8.1774 8.1708 -2.2195 15 7 8.3173 9.4439 -2.4866 16 14 8.7641 6.8893 -3.4455 17 1 7.7064 6.6555 -4.4613 18 1 9.9967 7.3742 -4.1168 19 1 9.0553 5.6195 -2.7328 20 6 7.0740 5.8277 0.3811 21 6 6.5812 4.5485 0.5025 22 6 3.8722 3.1407 1.1420 23 6 2.3626 3.2331 1.3794 24 8 1.7877 1.9273 1.2685 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.6906 0.7733 -1.2408 29 1 3.9649 0.5481 0.5038 30 1 6.0767 1.9737 0.3524 31 1 5.7221 1.9281 -1.3914 32 1 5.7302 3.9518 -2.7173 33 1 6.5927 6.2376 -2.9719 34 1 8.7253 9.7223 -3.3214 35 1 7.4511 6.3481 1.2491 36 1 6.5725 4.0648 1.4681 37 1 4.3259 2.5257 1.9193 38 1 4.3067 4.1400 1.1687 39 1 2.1745 3.6313 2.3764 40 1 1.9165 3.8914 0.6338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602899043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -66.691257 kcal Electronic energy + Delta-G solvation = -21446.090771 eV Core-core repulsion = 18225.580479 eV Total energy + Delta-G solvation = -3220.510292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.89151 -38.14950 -37.09408 -35.54832 -33.60101 -31.15816 -30.62651 -29.71704 -28.28411 -26.72790 -25.07565 -23.89653 -22.72554 -21.50977 -20.54527 -19.90262 -17.47547 -17.40099 -16.78841 -16.25374 -15.71475 -15.32271 -14.97253 -14.40915 -14.28516 -14.09023 -13.91117 -13.81493 -13.51902 -13.32854 -12.76758 -12.37164 -12.05280 -11.91241 -11.69305 -11.46897 -11.34237 -11.25712 -10.97855 -10.80300 -10.53596 -10.26222 -10.09235 -9.92414 -9.62756 -9.56555 -9.14829 -8.25149 -7.73009 -7.54001 -6.97899 -4.50926 2.48829 2.66592 3.08038 3.14805 3.20773 3.30349 3.74832 3.96510 4.24942 4.53868 4.83369 4.85809 5.03944 5.15041 5.21681 5.26348 5.28831 5.42960 5.50656 5.52014 5.59644 5.68104 5.74557 5.93693 5.96908 6.05293 6.08876 6.15111 6.54217 6.79440 6.81519 6.86842 7.00805 7.10743 7.17461 7.19998 7.41164 7.56266 7.78524 7.86583 8.10054 8.33183 8.63362 8.77822 10.04493 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.003771 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.236635 B = 7424.119146 C = 7669.117000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.259 3.741 4 H 0.063 0.937 5 C 0.033 3.967 6 N -0.529 5.529 7 C 0.122 3.878 8 C -0.213 4.213 9 C -0.052 4.052 10 C -0.240 4.240 11 C 0.096 3.904 12 C -0.448 4.448 13 H 0.090 0.910 14 C 0.084 3.916 15 N -0.808 5.808 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.292 1.292 19 H -0.244 1.244 20 C -0.210 4.210 21 C -0.075 4.075 22 C 0.014 3.986 23 C 0.076 3.924 24 O -0.413 6.413 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.285 0.715 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -13.383 2.972 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C 0.163 3.837 4 H 0.081 0.919 5 C -0.095 4.095 6 N -0.255 5.255 7 C -0.004 4.004 8 C -0.215 4.215 9 C -0.071 4.071 10 C -0.259 4.259 11 C 0.093 3.907 12 C -0.476 4.476 13 H 0.108 0.892 14 C -0.135 4.135 15 N -0.432 5.432 16 Si 0.740 3.260 17 H -0.196 1.196 18 H -0.219 1.219 19 H -0.167 1.167 20 C -0.230 4.230 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.001 4.001 24 O -0.335 6.335 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.119 -13.113 2.631 16.771 hybrid contribution 0.590 -0.476 -0.212 0.787 sum -9.529 -13.589 2.419 16.772 Atomic orbital electron populations 1.22752 0.80263 1.02702 1.00645 1.87947 1.20727 1.26302 1.94079 1.22910 0.92896 0.82321 0.85559 0.91917 1.22453 0.92880 0.91534 1.02658 1.62298 1.15154 1.18564 1.29477 1.20746 0.84528 0.95592 0.99538 1.18817 1.12442 0.96157 0.94087 1.20414 0.96897 0.94364 0.95438 1.21025 1.09653 0.96744 0.98481 1.17739 0.89315 0.92311 0.91356 1.19521 1.32921 0.95868 0.99304 0.89225 1.26175 0.93375 0.95975 0.97984 1.69701 1.32466 1.16860 1.24205 0.86286 0.77653 0.82229 0.79872 1.19649 1.21928 1.16743 1.20978 1.09143 0.95264 0.97589 1.20485 0.98029 0.94945 0.95890 1.22872 0.96489 1.02270 0.89733 1.22660 0.92193 0.82815 1.02403 1.87808 1.77356 1.32079 1.36256 0.93090 0.93912 0.89530 0.89211 0.93522 0.95196 0.91148 0.88908 0.88308 0.90443 0.88296 0.89237 0.94301 0.87840 0.88167 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.89 101.05 1.10 1.41 16 2 O -0.37 -4.82 10.62 -59.03 -0.63 -5.44 16 3 C 0.26 3.45 3.32 37.21 0.12 3.57 16 4 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 5 C 0.03 0.45 5.30 -3.71 -0.02 0.43 16 6 N -0.53 -7.99 4.72 -235.75 -1.11 -9.10 16 7 C 0.12 1.95 5.11 -4.97 -0.03 1.93 16 8 C -0.21 -4.14 4.91 -104.33 -0.51 -4.65 16 9 C -0.05 -1.10 9.67 -39.66 -0.38 -1.49 16 10 C -0.24 -5.68 7.18 -38.87 -0.28 -5.96 16 11 C 0.10 2.38 5.10 -106.83 -0.55 1.84 16 12 C -0.45 -11.98 9.57 -37.74 -0.36 -12.34 16 13 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 14 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 15 N -0.81 -21.43 13.93 55.55 0.77 -20.66 16 16 Si 0.91 20.69 24.52 -169.99 -4.17 16.52 16 17 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.24 -5.66 6.86 56.52 0.39 -5.27 16 20 C -0.21 -4.73 9.80 -38.87 -0.38 -5.11 16 21 C -0.07 -1.48 7.88 -39.66 -0.31 -1.80 16 22 C 0.01 0.21 5.25 -3.72 -0.02 0.19 16 23 C 0.08 0.96 7.02 37.21 0.26 1.22 16 24 O -0.41 -5.81 10.32 -59.03 -0.61 -6.42 16 25 H 0.05 0.49 7.89 -51.93 -0.41 0.08 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.10 2.36 4.73 -52.49 -0.25 2.11 16 34 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 35 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.09 1.56 8.00 -52.49 -0.42 1.14 16 37 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.10 1.62 6.00 -51.93 -0.31 1.31 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -27.85 321.34 -8.39 -36.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.04 Total: 2.70 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.45 Total: -18.67 kcal Atomic # 7 Polarization: -29.42 SS G_CDS: -0.34 Total: -29.76 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.24 Total: -11.86 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.17 Total: 16.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.85 -8.39 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602899043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.458 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds