Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99908 * 2 1 4 4 H 1.09000 * 109.54687 * 310.10808 * 3 2 1 5 5 C 1.53102 * 109.50857 * 190.00310 * 3 2 1 6 6 N 1.47006 * 109.26053 * 183.21620 * 5 3 2 7 7 C 1.46903 * 111.00196 * 182.38896 * 6 5 3 8 8 C 1.50703 * 109.47327 * 170.32015 * 7 6 5 9 9 C 1.38634 * 119.74593 * 269.72634 * 8 7 6 10 10 C 1.37626 * 120.24573 * 179.75798 * 9 8 7 11 11 C 1.40713 * 119.74328 * 0.54032 * 10 9 8 12 12 C 1.41388 * 120.24363 * 179.74273 * 11 10 9 13 13 H 1.08004 * 120.00500 * 150.21826 * 12 11 10 14 14 C 1.39947 * 120.00024 * 330.21355 * 12 11 10 15 15 N 1.30823 * 119.99696 * 161.72905 * 14 12 11 16 16 Si 1.86803 * 119.99933 * 341.72684 * 14 12 11 17 17 H 1.48495 * 109.46890 * 95.41211 * 16 14 12 18 18 H 1.48503 * 109.46903 * 215.41161 * 16 14 12 19 19 H 1.48493 * 109.46839 * 335.41152 * 16 14 12 20 20 C 1.40721 * 119.51249 * 359.71356 * 11 10 9 21 21 C 1.37622 * 119.74354 * 0.02562 * 20 11 10 22 22 C 1.47011 * 110.75309 * 58.61497 * 6 5 3 23 23 C 1.53093 * 109.29611 * 301.36348 * 22 6 5 24 24 O 1.43017 * 109.50887 * 70.21914 * 3 2 1 25 25 H 1.08997 * 109.46736 * 299.99799 * 1 2 3 26 26 H 1.08991 * 109.47405 * 60.00137 * 1 2 3 27 27 H 1.09001 * 109.47039 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.50488 * 63.28021 * 5 3 2 29 29 H 1.09002 * 109.53702 * 303.17466 * 5 3 2 30 30 H 1.08999 * 109.46912 * 290.32346 * 7 6 5 31 31 H 1.09004 * 109.46575 * 50.31982 * 7 6 5 32 32 H 1.08003 * 119.87881 * 0.02562 * 9 8 7 33 33 H 1.07997 * 120.12715 * 180.27685 * 10 9 8 34 34 H 0.97003 * 119.99637 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.12716 * 180.02562 * 20 11 10 36 36 H 1.07999 * 119.87695 * 179.97438 * 21 20 11 37 37 H 1.09008 * 109.50776 * 61.31899 * 22 6 5 38 38 H 1.09001 * 109.50834 * 181.40436 * 22 6 5 39 39 H 1.09001 * 109.51481 * 176.80612 * 23 22 6 40 40 H 1.09007 * 109.50894 * 296.93490 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5540 1.9077 -0.7856 5 6 3.5165 1.1945 -0.2507 6 7 4.1208 2.5323 -0.1730 7 6 5.5597 2.4777 -0.4642 8 6 6.0962 3.8785 -0.6099 9 6 6.1066 4.4848 -1.8566 10 6 6.5896 5.7654 -2.0006 11 6 7.0846 6.4552 -0.8784 12 6 7.5884 7.7692 -1.0153 13 1 7.5187 8.4629 -0.1905 14 6 8.1774 8.1708 -2.2195 15 7 8.3173 9.4439 -2.4866 16 14 8.7641 6.8893 -3.4455 17 1 7.7064 6.6555 -4.4613 18 1 9.9967 7.3742 -4.1168 19 1 9.0553 5.6195 -2.7328 20 6 7.0740 5.8277 0.3811 21 6 6.5812 4.5485 0.5025 22 6 3.8722 3.1407 1.1420 23 6 2.3626 3.2331 1.3794 24 8 1.7877 1.9273 1.2685 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.6906 0.7733 -1.2408 29 1 3.9649 0.5481 0.5038 30 1 6.0767 1.9737 0.3524 31 1 5.7221 1.9281 -1.3914 32 1 5.7302 3.9518 -2.7173 33 1 6.5927 6.2376 -2.9719 34 1 8.7253 9.7223 -3.3214 35 1 7.4511 6.3481 1.2491 36 1 6.5725 4.0648 1.4681 37 1 4.3259 2.5257 1.9193 38 1 4.3067 4.1400 1.1687 39 1 2.1745 3.6313 2.3764 40 1 1.9165 3.8914 0.6338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602899043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = -84.845971 kcal Electronic energy + Delta-G solvation = -21446.878018 eV Core-core repulsion = 18225.580479 eV Total energy + Delta-G solvation = -3221.297539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97679 -39.71508 -38.17238 -36.77623 -35.39867 -32.79370 -31.75462 -31.36371 -29.63551 -27.76965 -26.41571 -25.01903 -24.11914 -23.22671 -21.86773 -21.35306 -19.34224 -18.40623 -17.82079 -17.48144 -17.20582 -16.56789 -16.18963 -15.84368 -15.60483 -15.45077 -15.25049 -14.97019 -14.72218 -14.66681 -14.34189 -14.06532 -13.68002 -13.12793 -12.98678 -12.90914 -12.61579 -12.56306 -12.24781 -12.18584 -12.00813 -11.92231 -11.61804 -11.38748 -11.02430 -10.96170 -10.69714 -9.50704 -9.46372 -9.23588 -8.89398 -6.48278 0.75875 0.90343 1.26874 1.40815 1.49382 2.12650 2.19008 2.51893 2.79536 3.27455 3.57443 3.84152 3.86517 3.96202 4.10121 4.22074 4.24171 4.40875 4.46343 4.49144 4.53824 4.55452 4.58382 4.67988 4.72735 4.80016 4.82929 4.89137 4.92094 5.07720 5.10497 5.34246 5.63127 5.75049 5.86660 5.90345 5.95288 5.98087 6.11297 6.20240 6.28034 6.44123 6.76425 6.85933 8.19399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035201 B = 0.003771 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.236635 B = 7424.119146 C = 7669.117000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.258 3.742 4 H 0.067 0.933 5 C 0.038 3.962 6 N -0.538 5.538 7 C 0.124 3.876 8 C -0.187 4.187 9 C -0.060 4.060 10 C -0.251 4.251 11 C 0.074 3.926 12 C -0.488 4.488 13 H 0.054 0.946 14 C 0.047 3.953 15 N -0.853 5.853 16 Si 0.967 3.033 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.252 1.252 20 C -0.221 4.221 21 C -0.069 4.069 22 C 0.015 3.985 23 C 0.077 3.923 24 O -0.424 6.424 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.293 0.707 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 -16.774 2.760 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.162 3.838 4 H 0.084 0.916 5 C -0.090 4.090 6 N -0.264 5.264 7 C -0.002 4.002 8 C -0.189 4.189 9 C -0.079 4.079 10 C -0.270 4.270 11 C 0.072 3.928 12 C -0.518 4.518 13 H 0.072 0.928 14 C -0.167 4.167 15 N -0.480 5.480 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.176 1.176 20 C -0.241 4.241 21 C -0.088 4.088 22 C -0.113 4.113 23 C 0.001 3.999 24 O -0.346 6.346 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.318 -16.509 2.426 20.163 hybrid contribution 0.776 0.345 0.014 0.849 sum -10.543 -16.164 2.441 19.452 Atomic orbital electron populations 1.22959 0.78601 1.04279 1.01012 1.87920 1.22544 1.26035 1.94118 1.22930 0.92859 0.82635 0.85389 0.91593 1.22445 0.92928 0.90347 1.03323 1.62190 1.14345 1.19808 1.30044 1.20731 0.85282 0.93121 1.01115 1.19303 1.09069 0.97398 0.93103 1.20747 0.96355 0.93553 0.97203 1.21119 1.10095 0.97918 0.97849 1.17870 0.90046 0.91985 0.92921 1.19498 1.36250 0.96811 0.99219 0.92773 1.26829 0.93127 0.97533 0.99258 1.69734 1.34651 1.18155 1.25446 0.85462 0.77853 0.79554 0.78064 1.18460 1.20626 1.17560 1.21169 1.09454 0.96527 0.96912 1.20789 0.96581 0.93756 0.97649 1.22867 0.97565 1.01350 0.89565 1.22727 0.91050 0.82459 1.03636 1.87809 1.77472 1.32529 1.36775 0.93521 0.92737 0.87443 0.87954 0.93750 0.93874 0.89453 0.86247 0.88914 0.89699 0.88254 0.86116 0.93867 0.89318 0.86147 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.89 113.37 1.23 1.68 16 2 O -0.39 -8.95 10.62 -126.22 -1.34 -10.29 16 3 C 0.26 6.11 3.32 72.02 0.24 6.35 16 4 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 5 C 0.04 0.88 5.30 86.32 0.46 1.34 16 6 N -0.54 -14.25 4.72 -899.78 -4.25 -18.50 16 7 C 0.12 3.42 5.11 85.56 0.44 3.85 16 8 C -0.19 -6.63 4.91 -19.68 -0.10 -6.73 16 9 C -0.06 -2.36 9.67 22.22 0.21 -2.15 16 10 C -0.25 -11.67 7.18 22.73 0.16 -11.51 16 11 C 0.07 3.75 5.10 -21.29 -0.11 3.65 16 12 C -0.49 -27.55 9.57 23.46 0.22 -27.33 16 13 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 14 C 0.05 2.52 5.40 85.26 0.46 2.98 16 15 N -0.85 -47.37 13.93 21.83 0.30 -47.07 16 16 Si 0.97 43.10 24.52 68.60 1.68 44.79 16 17 H -0.26 -10.94 6.71 99.48 0.67 -10.27 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.25 -11.38 6.86 99.48 0.68 -10.70 16 20 C -0.22 -9.91 9.80 22.73 0.22 -9.68 16 21 C -0.07 -2.57 7.88 22.22 0.18 -2.40 16 22 C 0.01 0.37 5.25 86.31 0.45 0.82 16 23 C 0.08 1.75 7.02 72.01 0.51 2.26 16 24 O -0.42 -10.77 10.32 -126.22 -1.30 -12.07 16 25 H 0.05 0.80 7.89 -2.39 -0.02 0.78 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 31 H 0.09 2.18 7.98 -2.38 -0.02 2.16 16 32 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.09 4.39 4.73 -2.91 -0.01 4.37 16 34 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 35 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.12 3.75 8.00 -2.91 -0.02 3.73 16 37 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 2.53 6.00 -2.39 -0.01 2.51 16 39 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -61.27 321.34 0.63 -60.64 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.95 Total: 19.37 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 4.58 Total: -36.86 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -3.94 Total: -65.56 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -2.64 Total: -22.37 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.68 Total: 44.79 kcal Total: -61.27 0.63 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602899043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.210 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds