Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47239 * 2 1 4 4 C 1.36905 * 119.99983 * 279.42202 * 3 2 1 5 5 H 1.08005 * 120.00230 * 185.01897 * 4 3 2 6 6 C 1.39016 * 120.00105 * 5.02269 * 4 3 2 7 7 N 1.31376 * 120.00190 * 56.29914 * 6 4 3 8 8 Si 1.86806 * 119.99970 * 236.30264 * 6 4 3 9 9 H 1.48501 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46859 * 119.99515 * 8 6 4 11 11 H 1.48497 * 109.47220 * 239.99810 * 8 6 4 12 12 C 1.34782 * 120.00335 * 99.41921 * 3 2 1 13 13 O 1.21616 * 120.00062 * 176.79830 * 12 3 2 14 14 C 1.47491 * 119.99494 * 356.80371 * 12 3 2 15 15 C 1.39799 * 120.09177 * 152.18948 * 14 12 3 16 16 C 1.37689 * 119.90629 * 180.02562 * 15 14 12 17 17 C 1.39017 * 120.09018 * 0.02562 * 16 15 14 18 18 O 1.35723 * 119.89994 * 179.97438 * 17 16 15 19 19 C 1.42891 * 117.00257 * 357.20357 * 18 17 16 20 20 C 1.53001 * 109.47501 * 73.07743 * 19 18 17 21 21 C 1.52997 * 109.47184 * 193.08030 * 19 18 17 22 22 C 1.39005 * 120.19217 * 0.23624 * 17 16 15 23 23 C 1.37692 * 120.09110 * 359.48683 * 22 17 16 24 24 H 1.09004 * 109.47235 * 286.23399 * 1 2 3 25 25 H 1.08996 * 109.47213 * 46.22962 * 1 2 3 26 26 H 1.08994 * 109.47479 * 166.23162 * 1 2 3 27 27 H 1.08996 * 109.46987 * 240.00025 * 2 1 3 28 28 H 1.09000 * 109.47438 * 119.99908 * 2 1 3 29 29 H 0.97007 * 120.00409 * 180.02562 * 7 6 4 30 30 H 1.08000 * 120.04935 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.95585 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47242 * 313.07767 * 19 18 17 33 33 H 1.08993 * 109.47630 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.47046 * 300.00604 * 20 19 18 35 35 H 1.09007 * 109.47004 * 59.99631 * 20 19 18 36 36 H 1.09011 * 109.47087 * 300.00036 * 21 19 18 37 37 H 1.08995 * 109.47256 * 59.99560 * 21 19 18 38 38 H 1.08995 * 109.47845 * 180.02562 * 21 19 18 39 39 H 1.07998 * 119.95697 * 179.72077 * 22 17 16 40 40 H 1.08002 * 120.04646 * 180.23346 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0635 2.0913 -1.1696 5 1 2.4984 3.0798 -1.1849 6 6 1.5497 1.5400 -2.3378 7 7 0.3014 1.1323 -2.3781 8 14 2.6341 1.3787 -3.8503 9 1 3.9882 1.9079 -3.5472 10 1 2.7361 -0.0517 -4.2359 11 1 2.0401 2.1522 -4.9701 12 6 2.4231 1.9529 1.1515 13 8 2.8829 3.0788 1.1426 14 6 2.3085 1.2130 2.4222 15 6 3.1904 1.4834 3.4727 16 6 3.0803 0.7900 4.6572 17 6 2.0943 -0.1781 4.8090 18 8 1.9896 -0.8596 5.9780 19 6 2.9626 -0.5742 6.9848 20 6 2.6776 0.7997 7.5948 21 6 2.8934 -1.6421 8.0783 22 6 1.2188 -0.4539 3.7651 23 6 1.3183 0.2388 2.5793 24 1 -0.3634 0.2873 0.9867 25 1 -0.3633 0.7109 -0.7421 26 1 -0.3634 -0.9981 -0.2446 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -0.0571 0.7473 -3.1931 30 1 3.9575 2.2345 3.3551 31 1 3.7615 0.9979 5.4691 32 1 3.9574 -0.5746 6.5392 33 1 3.4196 1.0172 8.3630 34 1 2.7269 1.5604 6.8157 35 1 1.6828 0.8001 8.0404 36 1 1.8985 -1.6417 8.5240 37 1 3.0964 -2.6208 7.6437 38 1 3.6353 -1.4242 8.8465 39 1 0.4570 -1.2099 3.8857 40 1 0.6352 0.0266 1.7701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604481129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = -1.075284 kcal Electronic energy + Delta-G solvation = -21774.148560 eV Core-core repulsion = 18556.483591 eV Total energy + Delta-G solvation = -3217.664969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24908 -38.96614 -36.67076 -35.26634 -33.27067 -32.43149 -30.73471 -29.70264 -29.28995 -27.43359 -25.25524 -23.21084 -22.50921 -22.19579 -20.90340 -19.39515 -18.07262 -16.89573 -16.53746 -15.72191 -15.44361 -15.07832 -14.79799 -14.44839 -13.91989 -13.67034 -13.50473 -13.46358 -12.91332 -12.87444 -12.62986 -12.45720 -12.37137 -11.84866 -11.80261 -11.54423 -11.37463 -11.16028 -10.97287 -10.79979 -10.60258 -10.49038 -10.22944 -10.12293 -9.84513 -8.80256 -8.56527 -8.34698 -8.01322 -7.72814 -6.70825 -3.63444 1.55961 1.75617 3.04389 3.25221 3.26167 3.35475 3.73083 4.06042 4.32861 4.62928 4.72413 4.77818 4.91567 4.96844 5.15297 5.22880 5.31811 5.40781 5.52956 5.56666 5.59318 5.76919 5.81527 5.90122 5.92284 6.01452 6.06525 6.32140 6.33651 6.44064 6.60048 6.63274 6.74485 6.83416 7.00128 7.10359 7.19201 7.65183 7.87768 8.16285 8.47839 9.14515 9.36480 10.04065 10.17892 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.004134 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.761648 B = 6771.114946 C = 7160.151359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.098 3.902 3 N -0.417 5.417 4 C -0.358 4.358 5 H 0.113 0.887 6 C 0.078 3.922 7 N -0.784 5.784 8 Si 0.865 3.135 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.463 3.537 13 O -0.596 6.596 14 C -0.130 4.130 15 C -0.043 4.043 16 C -0.222 4.222 17 C 0.125 3.875 18 O -0.314 6.314 19 C 0.079 3.921 20 C -0.191 4.191 21 C -0.145 4.145 22 C -0.162 4.162 23 C -0.107 4.107 24 H 0.046 0.954 25 H 0.149 0.851 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.274 0.726 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -7.717 14.014 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.026 4.026 3 N -0.133 5.133 4 C -0.482 4.482 5 H 0.131 0.869 6 C -0.134 4.134 7 N -0.416 5.416 8 Si 0.688 3.312 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.207 1.207 12 C 0.255 3.745 13 O -0.483 6.483 14 C -0.133 4.133 15 C -0.062 4.062 16 C -0.240 4.240 17 C 0.080 3.920 18 O -0.228 6.228 19 C 0.022 3.978 20 C -0.248 4.248 21 C -0.202 4.202 22 C -0.180 4.180 23 C -0.125 4.125 24 H 0.064 0.936 25 H 0.166 0.834 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.144 0.856 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.511 -7.408 13.916 15.837 hybrid contribution 0.578 -0.211 -0.646 0.892 sum 2.089 -7.619 13.270 15.443 Atomic orbital electron populations 1.23188 0.96041 1.04405 1.03434 1.21776 0.95395 0.84478 1.00968 1.43749 1.52425 1.10375 1.06777 1.19340 1.41691 1.03966 0.83207 0.86898 1.25047 0.93971 0.95288 0.99120 1.70055 1.10700 1.31954 1.28849 0.86919 0.83933 0.78412 0.81938 1.18626 1.20234 1.20706 1.17642 0.87296 0.86891 0.82698 1.90582 1.52013 1.19774 1.85968 1.20230 0.97973 0.98784 0.96361 1.21011 0.97215 0.96847 0.91129 1.21194 1.01916 1.01152 0.99760 1.19132 0.95319 0.92025 0.85549 1.86034 1.52520 1.61886 1.22389 1.22329 0.91805 0.95624 0.87994 1.22563 1.02929 0.97243 1.02063 1.21796 1.03063 0.98318 0.97029 1.20346 1.01416 1.04152 0.92133 1.22988 0.98185 0.93283 0.98033 0.93623 0.83448 0.93919 0.91972 0.91277 0.91477 0.85362 0.85447 0.91231 0.91250 0.90898 0.91537 0.91575 0.91664 0.90670 0.85598 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.31 8.91 37.16 0.33 -3.98 16 2 C 0.10 2.10 4.97 -4.04 -0.02 2.08 16 3 N -0.42 -10.66 2.65 -116.01 -0.31 -10.96 16 4 C -0.36 -9.82 9.20 -15.00 -0.14 -9.95 16 5 H 0.11 3.37 7.39 -52.48 -0.39 2.98 16 6 C 0.08 1.95 4.06 -17.46 -0.07 1.88 16 7 N -0.78 -18.94 9.70 55.50 0.54 -18.40 16 8 Si 0.87 18.96 29.69 -169.99 -5.05 13.91 16 9 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.46 11.97 7.41 -12.49 -0.09 11.88 16 13 O -0.60 -17.43 16.24 5.26 0.09 -17.34 16 14 C -0.13 -2.77 5.46 -104.96 -0.57 -3.34 16 15 C -0.04 -0.81 9.58 -39.20 -0.38 -1.18 16 16 C -0.22 -3.50 7.80 -39.49 -0.31 -3.81 16 17 C 0.13 1.99 6.51 -39.01 -0.25 1.73 16 18 O -0.31 -4.41 9.86 -18.88 -0.19 -4.60 16 19 C 0.08 0.83 2.91 -26.73 -0.08 0.76 16 20 C -0.19 -1.85 8.92 37.16 0.33 -1.52 16 21 C -0.14 -1.17 9.56 37.16 0.36 -0.81 16 22 C -0.16 -2.67 9.97 -39.50 -0.39 -3.06 16 23 C -0.11 -2.01 7.44 -39.20 -0.29 -2.30 16 24 H 0.05 0.87 5.77 -51.93 -0.30 0.57 16 25 H 0.15 3.45 4.62 -51.95 -0.24 3.21 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.36 7.43 -51.93 -0.39 0.97 16 28 H 0.07 1.35 4.78 -51.93 -0.25 1.10 16 29 H 0.27 6.07 8.31 -40.82 -0.34 5.74 16 30 H 0.13 2.41 7.89 -52.49 -0.41 2.00 16 31 H 0.13 1.66 5.03 -52.49 -0.26 1.39 16 32 H 0.07 0.71 6.96 -51.93 -0.36 0.35 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.81 5.71 -51.93 -0.30 0.51 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.18 3.26 1.75 -52.49 -0.09 3.17 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -30.01 314.68 -6.83 -36.84 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.08 Total: 7.44 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.58 Total: -11.64 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.23 Total: -29.37 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.10 Total: -21.94 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.05 Total: 13.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.01 -6.83 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.767 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds