Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47239 * 2 1 4 4 C 1.36905 * 119.99983 * 279.42202 * 3 2 1 5 5 H 1.08005 * 120.00230 * 185.01897 * 4 3 2 6 6 C 1.39016 * 120.00105 * 5.02269 * 4 3 2 7 7 N 1.31376 * 120.00190 * 56.29914 * 6 4 3 8 8 Si 1.86806 * 119.99970 * 236.30264 * 6 4 3 9 9 H 1.48501 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46859 * 119.99515 * 8 6 4 11 11 H 1.48497 * 109.47220 * 239.99810 * 8 6 4 12 12 C 1.34782 * 120.00335 * 99.41921 * 3 2 1 13 13 O 1.21616 * 120.00062 * 176.79830 * 12 3 2 14 14 C 1.47491 * 119.99494 * 356.80371 * 12 3 2 15 15 C 1.39799 * 120.09177 * 152.18948 * 14 12 3 16 16 C 1.37689 * 119.90629 * 180.02562 * 15 14 12 17 17 C 1.39017 * 120.09018 * 0.02562 * 16 15 14 18 18 O 1.35723 * 119.89994 * 179.97438 * 17 16 15 19 19 C 1.42891 * 117.00257 * 357.20357 * 18 17 16 20 20 C 1.53001 * 109.47501 * 73.07743 * 19 18 17 21 21 C 1.52997 * 109.47184 * 193.08030 * 19 18 17 22 22 C 1.39005 * 120.19217 * 0.23624 * 17 16 15 23 23 C 1.37692 * 120.09110 * 359.48683 * 22 17 16 24 24 H 1.09004 * 109.47235 * 286.23399 * 1 2 3 25 25 H 1.08996 * 109.47213 * 46.22962 * 1 2 3 26 26 H 1.08994 * 109.47479 * 166.23162 * 1 2 3 27 27 H 1.08996 * 109.46987 * 240.00025 * 2 1 3 28 28 H 1.09000 * 109.47438 * 119.99908 * 2 1 3 29 29 H 0.97007 * 120.00409 * 180.02562 * 7 6 4 30 30 H 1.08000 * 120.04935 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.95585 * 179.97438 * 16 15 14 32 32 H 1.08998 * 109.47242 * 313.07767 * 19 18 17 33 33 H 1.08993 * 109.47630 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.47046 * 300.00604 * 20 19 18 35 35 H 1.09007 * 109.47004 * 59.99631 * 20 19 18 36 36 H 1.09011 * 109.47087 * 300.00036 * 21 19 18 37 37 H 1.08995 * 109.47256 * 59.99560 * 21 19 18 38 38 H 1.08995 * 109.47845 * 180.02562 * 21 19 18 39 39 H 1.07998 * 119.95697 * 179.72077 * 22 17 16 40 40 H 1.08002 * 120.04646 * 180.23346 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0635 2.0913 -1.1696 5 1 2.4984 3.0798 -1.1849 6 6 1.5497 1.5400 -2.3378 7 7 0.3014 1.1323 -2.3781 8 14 2.6341 1.3787 -3.8503 9 1 3.9882 1.9079 -3.5472 10 1 2.7361 -0.0517 -4.2359 11 1 2.0401 2.1522 -4.9701 12 6 2.4231 1.9529 1.1515 13 8 2.8829 3.0788 1.1426 14 6 2.3085 1.2130 2.4222 15 6 3.1904 1.4834 3.4727 16 6 3.0803 0.7900 4.6572 17 6 2.0943 -0.1781 4.8090 18 8 1.9896 -0.8596 5.9780 19 6 2.9626 -0.5742 6.9848 20 6 2.6776 0.7997 7.5948 21 6 2.8934 -1.6421 8.0783 22 6 1.2188 -0.4539 3.7651 23 6 1.3183 0.2388 2.5793 24 1 -0.3634 0.2873 0.9867 25 1 -0.3633 0.7109 -0.7421 26 1 -0.3634 -0.9981 -0.2446 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -0.0571 0.7473 -3.1931 30 1 3.9575 2.2345 3.3551 31 1 3.7615 0.9979 5.4691 32 1 3.9574 -0.5746 6.5392 33 1 3.4196 1.0172 8.3630 34 1 2.7269 1.5604 6.8157 35 1 1.6828 0.8001 8.0404 36 1 1.8985 -1.6417 8.5240 37 1 3.0964 -2.6208 7.6437 38 1 3.6353 -1.4242 8.8465 39 1 0.4570 -1.2099 3.8857 40 1 0.6352 0.0266 1.7701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604481129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -18.547056 kcal Electronic energy + Delta-G solvation = -21774.906193 eV Core-core repulsion = 18556.483591 eV Total energy + Delta-G solvation = -3218.422602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59661 -40.51734 -38.10625 -37.20497 -34.40375 -34.08925 -32.32140 -31.19477 -30.81747 -28.18589 -27.09610 -24.50287 -24.12667 -23.74810 -21.96036 -21.09086 -19.23016 -18.81305 -18.17687 -16.93220 -16.90268 -16.62834 -16.27869 -16.03856 -15.53981 -15.26931 -14.90715 -14.69283 -14.39269 -14.27163 -13.95321 -13.63846 -13.25217 -13.20212 -13.05780 -13.02366 -12.80542 -12.59412 -12.53724 -12.22512 -12.11734 -11.92789 -11.71231 -11.56268 -11.36585 -10.74029 -10.32623 -9.96242 -9.91164 -9.13748 -8.61114 -5.67513 0.10272 0.37713 1.26082 1.43882 1.56741 2.01321 2.22072 2.26434 2.62688 2.97381 3.14465 3.79463 3.88396 3.91283 3.95352 4.02292 4.18404 4.24661 4.33923 4.40374 4.59045 4.66914 4.69647 4.71175 4.82024 4.88061 4.92934 5.04325 5.08288 5.16939 5.21177 5.26272 5.28416 5.30960 5.36525 5.54816 5.73400 6.08920 6.11342 6.47103 6.57358 7.17583 7.42467 8.11592 8.25614 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.004134 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.761648 B = 6771.114946 C = 7160.151359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.097 3.903 3 N -0.422 5.422 4 C -0.419 4.419 5 H 0.069 0.931 6 C 0.067 3.933 7 N -0.783 5.783 8 Si 0.933 3.067 9 H -0.283 1.283 10 H -0.256 1.256 11 H -0.270 1.270 12 C 0.442 3.558 13 O -0.652 6.652 14 C -0.161 4.161 15 C -0.052 4.052 16 C -0.209 4.209 17 C 0.140 3.860 18 O -0.316 6.316 19 C 0.066 3.934 20 C -0.190 4.190 21 C -0.141 4.141 22 C -0.160 4.160 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.288 0.712 30 H 0.118 0.882 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -10.501 15.507 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.026 4.026 3 N -0.136 5.136 4 C -0.543 4.543 5 H 0.087 0.913 6 C -0.148 4.148 7 N -0.412 5.412 8 Si 0.755 3.245 9 H -0.208 1.208 10 H -0.181 1.181 11 H -0.195 1.195 12 C 0.235 3.765 13 O -0.545 6.545 14 C -0.164 4.164 15 C -0.071 4.071 16 C -0.227 4.227 17 C 0.094 3.906 18 O -0.231 6.231 19 C 0.010 3.990 20 C -0.247 4.247 21 C -0.198 4.198 22 C -0.178 4.178 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.175 0.825 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.172 0.828 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.050 -10.244 15.402 18.528 hybrid contribution 0.653 0.602 -0.981 1.324 sum 1.703 -9.641 14.421 17.431 Atomic orbital electron populations 1.23028 0.94750 1.05262 1.03285 1.21967 0.96398 0.82528 1.01670 1.43879 1.52012 1.11537 1.06191 1.19010 1.45476 1.04130 0.85635 0.91332 1.25601 0.94392 0.94142 1.00694 1.70075 1.10836 1.30150 1.30160 0.85934 0.80744 0.79239 0.78606 1.20789 1.18058 1.19550 1.18439 0.86890 0.86843 0.84291 1.90504 1.54543 1.22306 1.87102 1.19982 1.00742 1.00764 0.94960 1.21026 0.96943 0.97319 0.91862 1.21393 1.02183 1.00077 0.99065 1.19227 0.94172 0.91096 0.86147 1.86065 1.53666 1.61296 1.22027 1.22750 0.91293 0.97112 0.87815 1.22561 1.03843 0.96073 1.02199 1.21828 1.03988 0.97373 0.96596 1.20583 1.01934 1.04025 0.91246 1.22890 0.97399 0.92862 0.99181 0.92543 0.86275 0.90947 0.92568 0.89145 0.89979 0.86430 0.82469 0.90523 0.88654 0.92558 0.91625 0.91526 0.91658 0.88172 0.82793 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.15 8.91 71.98 0.64 -7.50 16 2 C 0.10 4.20 4.97 86.38 0.43 4.63 16 3 N -0.42 -22.62 2.65 -639.20 -1.69 -24.32 16 4 C -0.42 -24.36 9.20 84.09 0.77 -23.58 16 5 H 0.07 4.50 7.39 -2.91 -0.02 4.48 16 6 C 0.07 3.37 4.06 84.95 0.34 3.72 16 7 N -0.78 -37.54 9.70 21.67 0.21 -37.33 16 8 Si 0.93 39.44 29.69 68.60 2.04 41.47 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 12 C 0.44 24.36 7.41 86.68 0.64 25.00 16 13 O -0.65 -41.45 16.24 -4.08 -0.07 -41.52 16 14 C -0.16 -7.08 5.46 -20.08 -0.11 -7.19 16 15 C -0.05 -2.00 9.58 22.52 0.22 -1.79 16 16 C -0.21 -6.27 7.80 22.33 0.17 -6.09 16 17 C 0.14 4.08 6.51 22.64 0.15 4.23 16 18 O -0.32 -7.82 9.86 -90.45 -0.89 -8.71 16 19 C 0.07 1.16 2.91 30.59 0.09 1.25 16 20 C -0.19 -3.07 8.92 71.98 0.64 -2.43 16 21 C -0.14 -1.73 9.56 71.98 0.69 -1.04 16 22 C -0.16 -4.86 9.97 22.32 0.22 -4.64 16 23 C -0.11 -3.88 7.44 22.52 0.17 -3.71 16 24 H 0.06 2.10 5.77 -2.38 -0.01 2.09 16 25 H 0.12 5.57 4.62 -2.43 -0.01 5.56 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.45 7.43 -2.39 -0.02 2.43 16 28 H 0.09 3.50 4.78 -2.39 -0.01 3.49 16 29 H 0.29 12.32 8.31 -92.70 -0.77 11.55 16 30 H 0.12 4.68 7.89 -2.91 -0.02 4.66 16 31 H 0.16 3.70 5.03 -2.91 -0.01 3.68 16 32 H 0.08 1.28 6.96 -2.39 -0.02 1.26 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.11 5.71 -2.39 -0.01 1.10 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.18 6.37 1.75 -2.91 -0.01 6.36 16 Total: -1.00 -69.74 314.68 5.73 -64.02 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.06 Total: 25.56 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 5.07 Total: -19.17 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -1.48 Total: -61.65 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.96 Total: -50.23 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.04 Total: 41.47 kcal Total: -69.74 5.73 -64.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.468 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds