Wall clock time and date at job start Mon Mar 30 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99692 * 2 1 4 4 C 1.38738 * 120.05254 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94061 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05742 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94141 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.54960 * 20.49478 * 7 6 5 9 9 C 1.36931 * 119.99502 * 65.16446 * 8 7 6 10 10 H 1.08001 * 120.00701 * 354.33636 * 9 8 7 11 11 C 1.38812 * 119.99986 * 174.32851 * 9 8 7 12 12 N 1.31619 * 119.99994 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00399 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47290 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.47553 * 300.00480 * 13 11 9 16 16 H 1.48506 * 109.47214 * 60.00312 * 13 11 9 17 17 C 1.53184 * 109.61675 * 140.72335 * 7 6 5 18 18 C 1.53091 * 109.16424 * 176.88852 * 17 7 6 19 19 O 1.42911 * 109.41246 * 302.39026 * 18 17 7 20 20 C 1.42894 * 114.09744 * 61.15953 * 19 18 17 21 21 C 1.53095 * 109.41442 * 298.83809 * 20 19 18 22 22 C 1.38261 * 120.11135 * 0.29127 * 6 5 4 23 23 C 1.38152 * 120.05691 * 359.45690 * 22 6 5 24 24 H 1.09004 * 109.47625 * 299.99809 * 1 2 3 25 25 H 1.08999 * 109.47435 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.02919 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.97038 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99968 * 245.17272 * 8 7 6 30 30 H 0.97001 * 120.00523 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.51601 * 296.79285 * 17 7 6 32 32 H 1.08997 * 109.52257 * 56.98222 * 17 7 6 33 33 H 1.08988 * 109.48275 * 182.40561 * 18 17 7 34 34 H 1.08998 * 109.48979 * 62.37160 * 18 17 7 35 35 H 1.09001 * 109.47742 * 178.86014 * 20 19 18 36 36 H 1.08996 * 109.49710 * 58.82809 * 20 19 18 37 37 H 1.08998 * 109.52311 * 297.70516 * 21 20 19 38 38 H 1.09006 * 109.51835 * 177.51623 * 21 20 19 39 39 H 1.07996 * 119.97211 * 179.70994 * 22 6 5 40 40 H 1.08001 * 120.03328 * 180.29617 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6759 0.0005 7 6 3.9859 5.0186 0.0005 8 7 5.3605 4.8683 -0.4834 9 6 5.5926 4.4803 -1.7759 10 1 4.7667 4.1968 -2.4114 11 6 6.8897 4.4515 -2.2696 12 7 7.8964 4.7966 -1.4952 13 14 7.2064 3.9229 -4.0330 14 1 8.6640 3.9774 -4.3119 15 1 6.7170 2.5347 -4.2292 16 1 6.4901 4.8359 -4.9597 17 6 3.2238 5.9841 -0.9124 18 6 3.8815 7.3648 -0.8445 19 8 3.8923 7.8197 0.5103 20 6 4.6304 6.9812 1.4014 21 6 4.0027 5.5850 1.4236 22 6 1.9210 3.6048 0.0066 23 6 1.2914 2.3751 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3800 -0.0005 28 1 5.1344 2.5752 0.0000 29 1 6.1061 5.0436 0.1118 30 1 8.8028 4.7769 -1.8402 31 1 3.2543 5.6161 -1.9380 32 1 2.1879 6.0574 -0.5814 33 1 3.3179 8.0666 -1.4590 34 1 4.9049 7.2987 -1.2137 35 1 4.6061 7.4067 2.4047 36 1 5.6636 6.9098 1.0617 37 1 2.9826 5.6503 1.8019 38 1 4.5904 4.9318 2.0688 39 1 1.3341 4.5114 0.0118 40 1 0.2128 2.3201 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609358107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:36 Heat of formation + Delta-G solvation = -42.837034 kcal Electronic energy + Delta-G solvation = -22422.657933 eV Core-core repulsion = 19203.182038 eV Total energy + Delta-G solvation = -3219.475895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02762 -39.02226 -37.04021 -34.77420 -32.42347 -30.81216 -30.43671 -29.16629 -29.02577 -27.11833 -24.48111 -23.32312 -22.85971 -22.02688 -20.90525 -18.55767 -17.84765 -17.16636 -15.93932 -15.85772 -15.55785 -15.32486 -14.95105 -14.41515 -14.10184 -14.00940 -13.67948 -13.50595 -13.15286 -12.72689 -12.41865 -12.23858 -11.91236 -11.76944 -11.75276 -11.19140 -10.90742 -10.86960 -10.84615 -10.68171 -10.34968 -10.29692 -9.92154 -9.70630 -9.57022 -9.15578 -8.73740 -8.45230 -7.59948 -7.03123 -5.82382 -3.12610 1.87174 1.94449 3.41310 3.46703 3.47716 3.50855 4.28101 4.45450 4.54989 5.02909 5.16193 5.22085 5.26339 5.29877 5.44417 5.47249 5.48462 5.62586 5.65104 5.73767 5.87815 5.89409 5.98907 6.11991 6.16406 6.27513 6.29637 6.36836 6.47552 6.56298 6.69693 6.73182 6.80152 6.83431 6.97865 7.32308 7.41743 7.71486 7.75152 7.79436 8.36117 9.47855 10.00650 10.37907 11.39343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.007326 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.342118 B = 3820.915110 C = 5259.309615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.160 4.160 5 C -0.039 4.039 6 C -0.107 4.107 7 C 0.240 3.760 8 N -0.712 5.712 9 C -0.234 4.234 10 H 0.070 0.930 11 C -0.007 4.007 12 N -0.930 5.930 13 Si 0.900 3.100 14 H -0.292 1.292 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.150 4.150 18 C 0.068 3.932 19 O -0.394 6.394 20 C 0.066 3.934 21 C -0.146 4.146 22 C -0.087 4.087 23 C -0.218 4.218 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.146 0.854 29 H 0.385 0.615 30 H 0.256 0.744 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -2.461 5.190 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.057 4.057 6 C -0.110 4.110 7 C 0.148 3.852 8 N -0.353 5.353 9 C -0.365 4.365 10 H 0.087 0.913 11 C -0.203 4.203 12 N -0.578 5.578 13 Si 0.731 3.269 14 H -0.218 1.218 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.189 4.189 18 C -0.008 4.008 19 O -0.314 6.314 20 C -0.011 4.011 21 C -0.184 4.184 22 C -0.105 4.105 23 C -0.237 4.237 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.424 -2.513 5.065 13.650 hybrid contribution 0.239 -0.537 -1.082 1.231 sum -12.184 -3.050 3.983 13.177 Atomic orbital electron populations 1.22934 0.79315 1.03149 1.01050 1.86030 1.20662 1.27720 1.89427 1.19009 0.92409 0.83629 0.98657 1.20496 0.90937 0.98905 1.07545 1.21151 1.01600 0.89908 0.93032 1.20729 0.92692 0.97283 1.00292 1.18391 0.86625 0.88862 0.91369 1.42490 0.99893 1.81381 1.11574 1.19036 0.92064 1.36751 0.88609 0.91257 1.24691 0.95755 1.02145 0.97719 1.69638 0.98577 1.54211 1.35371 0.86375 0.76812 0.78520 0.85158 1.21773 1.21248 1.21322 1.22532 0.98081 0.96437 1.01871 1.22483 1.01722 0.94326 0.82315 1.87778 1.74275 1.50127 1.19181 1.22480 0.95660 0.89797 0.93168 1.22334 1.01484 0.97303 0.97265 1.20844 0.94506 0.96382 0.98806 1.21026 0.99056 0.92579 1.11022 0.93065 0.93019 0.88878 0.86057 0.83650 0.77988 0.93433 0.90653 0.92777 0.90578 0.91168 0.90125 0.92107 0.91466 0.91057 0.86432 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.89 10.50 -19.43 -0.20 -5.09 16 3 C 0.11 1.78 6.69 -39.22 -0.26 1.52 16 4 C -0.16 -2.86 9.99 -39.43 -0.39 -3.25 16 5 C -0.04 -0.75 8.74 -39.60 -0.35 -1.10 16 6 C -0.11 -1.97 4.53 -104.61 -0.47 -2.44 16 7 C 0.24 4.48 0.59 -132.79 -0.08 4.40 16 8 N -0.71 -15.93 3.17 -48.13 -0.15 -16.08 16 9 C -0.23 -5.89 7.70 -15.06 -0.12 -6.01 16 10 H 0.07 1.78 7.15 -52.49 -0.38 1.40 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.93 -26.34 13.07 55.49 0.73 -25.62 16 13 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C -0.15 -2.70 4.34 -26.59 -0.12 -2.81 16 18 C 0.07 1.23 6.68 37.20 0.25 1.48 16 19 O -0.39 -7.13 10.77 -35.23 -0.38 -7.51 16 20 C 0.07 1.10 6.67 37.21 0.25 1.34 16 21 C -0.15 -2.41 4.93 -26.59 -0.13 -2.54 16 22 C -0.09 -1.41 9.15 -39.60 -0.36 -1.78 16 23 C -0.22 -3.35 9.04 -39.43 -0.36 -3.70 16 24 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.15 3.11 6.80 -52.49 -0.36 2.75 16 29 H 0.39 9.27 6.92 -40.82 -0.28 8.99 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.07 1.47 7.03 -51.93 -0.37 1.11 16 32 H 0.05 0.87 6.45 -51.93 -0.33 0.54 16 33 H 0.08 1.22 8.14 -51.94 -0.42 0.80 16 34 H 0.07 1.48 7.75 -51.93 -0.40 1.07 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.13 7.21 -51.93 -0.37 0.75 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.12 1.71 6.44 -52.49 -0.34 1.38 16 40 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 LS Contribution 317.17 15.07 4.78 4.78 Total: -1.00 -28.39 317.17 -7.12 -35.52 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.63 Total: 11.13 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.24 Total: -13.86 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.57 Total: -41.70 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.58 Total: -12.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.39 -7.12 -35.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609358107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.319 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds