Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99692 * 2 1 4 4 C 1.38738 * 120.05254 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94061 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05742 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94141 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.54960 * 20.49478 * 7 6 5 9 9 C 1.36931 * 119.99502 * 65.16446 * 8 7 6 10 10 H 1.08001 * 120.00701 * 354.33636 * 9 8 7 11 11 C 1.38812 * 119.99986 * 174.32851 * 9 8 7 12 12 N 1.31619 * 119.99994 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00399 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47290 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.47553 * 300.00480 * 13 11 9 16 16 H 1.48506 * 109.47214 * 60.00312 * 13 11 9 17 17 C 1.53184 * 109.61675 * 140.72335 * 7 6 5 18 18 C 1.53091 * 109.16424 * 176.88852 * 17 7 6 19 19 O 1.42911 * 109.41246 * 302.39026 * 18 17 7 20 20 C 1.42894 * 114.09744 * 61.15953 * 19 18 17 21 21 C 1.53095 * 109.41442 * 298.83809 * 20 19 18 22 22 C 1.38261 * 120.11135 * 0.29127 * 6 5 4 23 23 C 1.38152 * 120.05691 * 359.45690 * 22 6 5 24 24 H 1.09004 * 109.47625 * 299.99809 * 1 2 3 25 25 H 1.08999 * 109.47435 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47088 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.02919 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.97038 * 179.97438 * 5 4 3 29 29 H 0.96998 * 119.99968 * 245.17272 * 8 7 6 30 30 H 0.97001 * 120.00523 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.51601 * 296.79285 * 17 7 6 32 32 H 1.08997 * 109.52257 * 56.98222 * 17 7 6 33 33 H 1.08988 * 109.48275 * 182.40561 * 18 17 7 34 34 H 1.08998 * 109.48979 * 62.37160 * 18 17 7 35 35 H 1.09001 * 109.47742 * 178.86014 * 20 19 18 36 36 H 1.08996 * 109.49710 * 58.82809 * 20 19 18 37 37 H 1.08998 * 109.52311 * 297.70516 * 21 20 19 38 38 H 1.09006 * 109.51835 * 177.51623 * 21 20 19 39 39 H 1.07996 * 119.97211 * 179.70994 * 22 6 5 40 40 H 1.08001 * 120.03328 * 180.29617 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6759 0.0005 7 6 3.9859 5.0186 0.0005 8 7 5.3605 4.8683 -0.4834 9 6 5.5926 4.4803 -1.7759 10 1 4.7667 4.1968 -2.4114 11 6 6.8897 4.4515 -2.2696 12 7 7.8964 4.7966 -1.4952 13 14 7.2064 3.9229 -4.0330 14 1 8.6640 3.9774 -4.3119 15 1 6.7170 2.5347 -4.2292 16 1 6.4901 4.8359 -4.9597 17 6 3.2238 5.9841 -0.9124 18 6 3.8815 7.3648 -0.8445 19 8 3.8923 7.8197 0.5103 20 6 4.6304 6.9812 1.4014 21 6 4.0027 5.5850 1.4236 22 6 1.9210 3.6048 0.0066 23 6 1.2914 2.3751 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3800 -0.0005 28 1 5.1344 2.5752 0.0000 29 1 6.1061 5.0436 0.1118 30 1 8.8028 4.7769 -1.8402 31 1 3.2543 5.6161 -1.9380 32 1 2.1879 6.0574 -0.5814 33 1 3.3179 8.0666 -1.4590 34 1 4.9049 7.2987 -1.2137 35 1 4.6061 7.4067 2.4047 36 1 5.6636 6.9098 1.0617 37 1 2.9826 5.6503 1.8019 38 1 4.5904 4.9318 2.0688 39 1 1.3341 4.5114 0.0118 40 1 0.2128 2.3201 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609358107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = -59.967995 kcal Electronic energy + Delta-G solvation = -22423.400787 eV Core-core repulsion = 19203.182038 eV Total energy + Delta-G solvation = -3220.218749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36722 -40.32742 -38.33650 -36.35118 -34.21771 -32.19224 -31.86710 -30.76947 -30.43048 -28.09065 -26.20882 -24.83040 -24.38278 -23.35827 -22.21756 -20.08140 -19.11391 -18.99073 -17.28047 -17.22349 -16.77795 -16.55366 -16.51556 -15.86798 -15.75459 -15.42755 -15.32769 -14.90495 -14.43158 -14.11421 -13.88374 -13.52021 -13.42647 -13.08447 -12.93592 -12.77920 -12.75138 -12.46038 -12.27363 -12.12291 -11.95157 -11.75897 -11.55766 -11.30768 -11.10785 -10.90297 -10.31417 -9.79733 -9.03088 -8.80438 -7.88530 -5.15242 0.53871 0.61117 1.46342 1.47512 1.52467 2.46455 2.57856 2.93183 3.07555 3.44761 3.78467 3.96037 4.03540 4.09671 4.13239 4.20186 4.27246 4.39762 4.43662 4.49390 4.55832 4.68136 4.73548 4.76315 4.79273 4.87480 4.92107 4.99069 5.08929 5.19248 5.29131 5.32567 5.34143 5.45033 5.57932 5.62553 5.97597 6.01591 6.34730 6.37175 6.56528 7.41247 8.13549 8.39405 9.34114 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.007326 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.342118 B = 3820.915110 C = 5259.309615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.108 3.892 4 C -0.176 4.176 5 C -0.059 4.059 6 C -0.122 4.122 7 C 0.233 3.767 8 N -0.716 5.716 9 C -0.206 4.206 10 H 0.066 0.934 11 C -0.066 4.066 12 N -0.965 5.965 13 Si 0.950 3.050 14 H -0.299 1.299 15 H -0.286 1.286 16 H -0.282 1.282 17 C -0.144 4.144 18 C 0.072 3.928 19 O -0.395 6.395 20 C 0.066 3.934 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.208 4.208 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.374 0.626 30 H 0.247 0.753 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.112 0.888 36 H 0.033 0.967 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.143 0.857 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.028 -2.502 5.642 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.064 3.936 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.125 4.125 7 C 0.142 3.858 8 N -0.355 5.355 9 C -0.338 4.338 10 H 0.083 0.917 11 C -0.259 4.259 12 N -0.616 5.616 13 Si 0.781 3.219 14 H -0.226 1.226 15 H -0.213 1.213 16 H -0.208 1.208 17 C -0.183 4.183 18 C -0.005 4.005 19 O -0.315 6.315 20 C -0.011 4.011 21 C -0.177 4.177 22 C -0.100 4.100 23 C -0.226 4.226 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.207 0.793 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.130 0.870 36 H 0.051 0.949 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.161 0.839 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.054 -2.562 5.518 17.168 hybrid contribution 1.175 -0.612 -1.151 1.755 sum -14.879 -3.174 4.368 15.828 Atomic orbital electron populations 1.23316 0.76586 1.05381 1.02221 1.86020 1.23452 1.26951 1.89070 1.19055 0.91985 0.84881 0.97717 1.20524 0.92280 0.98332 1.08355 1.20887 1.00137 0.91322 0.95406 1.20642 0.93870 0.96208 1.01763 1.18654 0.84610 0.89656 0.92835 1.42556 1.01510 1.81022 1.10431 1.19154 0.91482 1.33724 0.89418 0.91654 1.25248 0.96029 1.04072 1.00512 1.69767 0.98362 1.56933 1.36513 0.85555 0.76028 0.78047 0.82239 1.22601 1.21323 1.20817 1.22478 0.99486 0.95743 1.00601 1.22419 0.99929 0.95300 0.82828 1.87781 1.74178 1.50505 1.18992 1.22563 0.94063 0.90217 0.94258 1.22298 1.02774 0.96816 0.95773 1.21063 0.93414 0.97882 0.97651 1.21375 1.00786 0.91493 1.08986 0.91553 0.91984 0.86405 0.86134 0.87023 0.79322 0.94386 0.92451 0.89816 0.88156 0.94977 0.86981 0.94857 0.89116 0.91168 0.83944 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.38 10.50 -92.45 -0.97 -10.35 16 3 C 0.11 3.37 6.69 22.51 0.15 3.52 16 4 C -0.18 -6.29 9.99 22.37 0.22 -6.07 16 5 C -0.06 -2.32 8.74 22.25 0.19 -2.13 16 6 C -0.12 -4.36 4.53 -19.85 -0.09 -4.45 16 7 C 0.23 8.54 0.59 2.98 0.00 8.55 16 8 N -0.72 -32.93 3.17 -306.20 -0.97 -33.90 16 9 C -0.21 -10.65 7.70 84.03 0.65 -10.01 16 10 H 0.07 3.41 7.15 -2.91 -0.02 3.39 16 11 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 12 N -0.96 -56.98 13.07 21.65 0.28 -56.70 16 13 Si 0.95 45.97 29.55 68.60 2.03 48.00 16 14 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 15 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 C -0.14 -4.93 4.34 30.69 0.13 -4.79 16 18 C 0.07 2.53 6.68 72.01 0.48 3.01 16 19 O -0.40 -13.56 10.77 -148.98 -1.60 -15.16 16 20 C 0.07 2.11 6.67 72.01 0.48 2.59 16 21 C -0.14 -4.36 4.93 30.69 0.15 -4.20 16 22 C -0.08 -2.39 9.15 22.25 0.20 -2.19 16 23 C -0.21 -5.60 9.04 22.37 0.20 -5.39 16 24 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 25 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 28 H 0.11 5.08 6.80 -2.91 -0.02 5.06 16 29 H 0.37 18.84 6.92 -92.71 -0.64 18.20 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.06 2.17 7.03 -2.39 -0.02 2.15 16 32 H 0.08 2.38 6.45 -2.39 -0.02 2.36 16 33 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.03 1.37 7.75 -2.39 -0.02 1.35 16 35 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.03 1.25 7.21 -2.39 -0.02 1.24 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.14 3.43 6.44 -2.91 -0.02 3.41 16 40 H 0.15 2.99 6.30 -2.91 -0.02 2.97 16 Total: -1.00 -62.93 317.17 3.53 -59.40 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.41 Total: 32.06 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.36 Total: -23.35 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -0.69 Total: -90.60 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -2.57 Total: -25.52 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -62.93 3.53 -59.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609358107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.563 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds