Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99973 * 2 1 4 4 O 1.20823 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00266 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47596 * 59.99508 * 5 3 2 7 7 C 1.53000 * 109.46780 * 299.99762 * 5 3 2 8 8 C 1.50707 * 109.47303 * 175.00054 * 7 5 3 9 9 C 1.38234 * 120.00035 * 269.72889 * 8 7 5 10 10 C 1.38236 * 120.00079 * 179.76338 * 9 8 7 11 11 C 1.38232 * 119.99788 * 0.50718 * 10 9 8 12 12 C 1.38235 * 120.00166 * 359.74398 * 11 10 9 13 13 C 1.38232 * 119.99972 * 89.99945 * 8 7 5 14 14 N 1.46902 * 109.47291 * 180.02562 * 5 3 2 15 15 C 1.46906 * 110.99573 * 274.99554 * 14 5 3 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 5 17 17 C 1.50696 * 109.47332 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99871 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00534 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00615 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99691 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47000 * 89.99937 * 21 19 17 23 23 H 1.48502 * 109.47306 * 209.99785 * 21 19 17 24 24 H 1.48501 * 109.47411 * 330.00053 * 21 19 17 25 25 H 1.09004 * 109.46978 * 60.00334 * 1 2 3 26 26 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46903 * 300.00078 * 1 2 3 28 28 H 1.08997 * 109.47474 * 294.99823 * 7 5 3 29 29 H 1.08999 * 109.47164 * 55.00018 * 7 5 3 30 30 H 1.08005 * 119.99928 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.99698 * 180.22800 * 10 9 8 32 32 H 1.07997 * 120.00086 * 179.72177 * 11 10 9 33 33 H 1.08001 * 120.00548 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.00044 * 0.02562 * 13 8 7 35 35 H 1.00896 * 111.00219 * 38.95194 * 14 5 3 36 36 H 1.09002 * 109.46991 * 299.99841 * 15 14 5 37 37 H 1.09000 * 109.47202 * 60.00133 * 15 14 5 38 38 H 1.08995 * 109.47213 * 300.00679 * 16 15 14 39 39 H 1.09008 * 109.47264 * 60.00068 * 16 15 14 40 40 H 0.97001 * 120.00228 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8907 7 6 4.1138 0.5812 1.2484 8 6 5.6193 0.5518 1.1875 9 6 6.2665 -0.5181 0.5983 10 6 7.6474 -0.5428 0.5381 11 6 8.3813 0.4976 1.0765 12 6 7.7342 1.5651 1.6704 13 6 6.3532 1.5922 1.7259 14 7 3.9828 2.6837 0.0002 15 6 4.0169 3.2232 -1.3658 16 6 4.4533 4.6890 -1.3244 17 6 4.4890 5.2423 -2.7257 18 1 4.2262 4.6117 -3.5621 19 6 4.8560 6.5539 -2.9399 20 7 4.8866 7.0370 -4.1627 21 14 5.3098 7.6450 -1.4931 22 1 6.7679 7.5397 -1.2320 23 1 4.9639 9.0543 -1.8082 24 1 4.5586 7.2083 -0.2889 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7967 1.1281 2.1363 29 1 3.7321 -0.4388 1.2942 30 1 5.6932 -1.3333 0.1819 31 1 8.1528 -1.3770 0.0744 32 1 9.4602 0.4762 1.0335 33 1 8.3076 2.3777 2.0915 34 1 5.8477 2.4258 2.1906 35 1 3.3831 3.2377 0.5929 36 1 4.7241 2.6499 -1.9653 37 1 3.0237 3.1526 -1.8093 38 1 3.7459 5.2619 -0.7250 39 1 5.4465 4.7601 -0.8808 40 1 5.1452 7.9597 -4.3134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614799788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = -69.154129 kcal Electronic energy + Delta-G solvation = -21315.186480 eV Core-core repulsion = 18094.569390 eV Total energy + Delta-G solvation = -3220.617090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67232 -39.11196 -37.07417 -35.79383 -33.68009 -32.25936 -30.72412 -30.29845 -28.46155 -27.31043 -24.57616 -23.53503 -22.39306 -21.20905 -20.64267 -20.17631 -17.78822 -17.10620 -16.80803 -16.56839 -16.25181 -15.21078 -15.01413 -14.58027 -14.34354 -14.06736 -13.68132 -13.51710 -13.24557 -13.05495 -12.83516 -12.62137 -12.44930 -12.18799 -11.90196 -11.47858 -11.34241 -11.08172 -11.06477 -10.86942 -10.81681 -10.49737 -10.20142 -9.78417 -9.76006 -9.21190 -8.74980 -8.55846 -8.50933 -8.20775 -6.01586 -3.99687 1.47333 1.58893 2.19491 2.70220 3.34956 3.41545 3.46921 3.93548 4.32787 4.48907 4.67316 4.94157 4.97775 5.00116 5.06447 5.13590 5.14178 5.18903 5.31211 5.33306 5.41506 5.52759 5.64760 5.79160 5.82748 6.12957 6.15242 6.21552 6.24909 6.33687 6.59527 6.67919 6.76998 6.79469 6.98824 7.16674 7.38838 7.46354 7.63547 7.74627 7.85736 8.55490 9.02180 9.60706 11.11829 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.005972 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.283598 B = 4687.759086 C = 6625.995349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.430 3.570 4 O -0.500 6.500 5 C 0.102 3.898 6 H 0.116 0.884 7 C -0.063 4.063 8 C -0.068 4.068 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.122 4.122 13 C -0.083 4.083 14 N -0.656 5.656 15 C 0.070 3.930 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.070 0.930 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.265 1.265 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.348 0.652 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.015 0.985 39 H 0.021 0.979 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -17.944 13.366 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.270 3.730 4 O -0.387 6.387 5 C -0.011 4.011 6 H 0.134 0.866 7 C -0.101 4.101 8 C -0.068 4.068 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.101 4.101 14 N -0.288 5.288 15 C -0.058 4.058 16 C -0.044 4.044 17 C -0.558 4.558 18 H 0.088 0.912 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.302 -17.611 13.268 22.052 hybrid contribution -0.959 0.940 0.224 1.361 sum -1.261 -16.672 13.492 21.484 Atomic orbital electron populations 1.23238 0.77003 1.03364 1.02526 1.86546 1.23070 1.34040 1.84073 1.25587 0.93824 0.81475 0.72081 1.90703 1.66883 1.36343 1.44734 1.21622 0.83761 0.94265 1.01464 0.86646 1.20533 0.92285 1.00707 0.96552 1.19502 0.94305 0.94568 0.98424 1.21004 0.94537 0.98283 0.99955 1.21029 0.94088 0.98814 1.00422 1.21093 0.99586 0.94620 0.98981 1.21150 0.94807 0.98135 0.99900 1.21022 0.93544 0.97243 0.98329 1.61075 1.54011 0.99545 1.14129 1.22087 0.99270 0.98315 0.86138 1.19502 0.96458 0.90592 0.97892 1.21038 1.45965 0.96967 0.91807 0.91169 1.24989 0.94896 0.97889 0.95590 1.69915 1.48860 1.15500 1.20061 0.86742 0.79189 0.79592 0.83552 1.20230 1.21515 1.18951 0.91955 0.88332 0.92083 0.90477 0.89728 0.86395 0.86556 0.86635 0.86382 0.85851 0.83171 0.91531 0.95325 0.96696 0.96034 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.46 10.37 -39.26 -0.41 -4.87 16 3 C 0.43 6.26 7.09 36.00 0.26 6.52 16 4 O -0.50 -8.92 15.05 -18.75 -0.28 -9.20 16 5 C 0.10 1.39 2.49 -68.87 -0.17 1.22 16 6 H 0.12 1.55 7.80 -51.93 -0.41 1.15 16 7 C -0.06 -0.70 4.99 -27.88 -0.14 -0.83 16 8 C -0.07 -0.82 4.95 -104.62 -0.52 -1.34 16 9 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 10 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 11 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 12 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 13 C -0.08 -1.08 9.31 -39.58 -0.37 -1.44 16 14 N -0.66 -10.92 5.48 -107.95 -0.59 -11.51 16 15 C 0.07 1.44 5.32 -3.82 -0.02 1.42 16 16 C -0.01 -0.16 4.30 -27.89 -0.12 -0.28 16 17 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -28.45 13.96 55.43 0.77 -27.67 16 21 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.08 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.35 5.93 7.75 -39.29 -0.30 5.63 16 36 H 0.07 1.37 8.06 -51.93 -0.42 0.96 16 37 H 0.03 0.63 7.62 -51.93 -0.40 0.23 16 38 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.02 0.53 7.57 -51.92 -0.39 0.13 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -33.36 340.07 -8.16 -41.53 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.09 Total: 3.22 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.02 Total: -14.27 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.18 Total: -39.19 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.69 Total: -14.07 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.36 -8.16 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614799788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.627 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds