Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99973 * 2 1 4 4 O 1.20823 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00266 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47596 * 59.99508 * 5 3 2 7 7 C 1.53000 * 109.46780 * 299.99762 * 5 3 2 8 8 C 1.50707 * 109.47303 * 175.00054 * 7 5 3 9 9 C 1.38234 * 120.00035 * 269.72889 * 8 7 5 10 10 C 1.38236 * 120.00079 * 179.76338 * 9 8 7 11 11 C 1.38232 * 119.99788 * 0.50718 * 10 9 8 12 12 C 1.38235 * 120.00166 * 359.74398 * 11 10 9 13 13 C 1.38232 * 119.99972 * 89.99945 * 8 7 5 14 14 N 1.46902 * 109.47291 * 180.02562 * 5 3 2 15 15 C 1.46906 * 110.99573 * 274.99554 * 14 5 3 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 5 17 17 C 1.50696 * 109.47332 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99871 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00534 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00615 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99691 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47000 * 89.99937 * 21 19 17 23 23 H 1.48502 * 109.47306 * 209.99785 * 21 19 17 24 24 H 1.48501 * 109.47411 * 330.00053 * 21 19 17 25 25 H 1.09004 * 109.46978 * 60.00334 * 1 2 3 26 26 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46903 * 300.00078 * 1 2 3 28 28 H 1.08997 * 109.47474 * 294.99823 * 7 5 3 29 29 H 1.08999 * 109.47164 * 55.00018 * 7 5 3 30 30 H 1.08005 * 119.99928 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.99698 * 180.22800 * 10 9 8 32 32 H 1.07997 * 120.00086 * 179.72177 * 11 10 9 33 33 H 1.08001 * 120.00548 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.00044 * 0.02562 * 13 8 7 35 35 H 1.00896 * 111.00219 * 38.95194 * 14 5 3 36 36 H 1.09002 * 109.46991 * 299.99841 * 15 14 5 37 37 H 1.09000 * 109.47202 * 60.00133 * 15 14 5 38 38 H 1.08995 * 109.47213 * 300.00679 * 16 15 14 39 39 H 1.09008 * 109.47264 * 60.00068 * 16 15 14 40 40 H 0.97001 * 120.00228 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7810 -0.8907 7 6 4.1138 0.5812 1.2484 8 6 5.6193 0.5518 1.1875 9 6 6.2665 -0.5181 0.5983 10 6 7.6474 -0.5428 0.5381 11 6 8.3813 0.4976 1.0765 12 6 7.7342 1.5651 1.6704 13 6 6.3532 1.5922 1.7259 14 7 3.9828 2.6837 0.0002 15 6 4.0169 3.2232 -1.3658 16 6 4.4533 4.6890 -1.3244 17 6 4.4890 5.2423 -2.7257 18 1 4.2262 4.6117 -3.5621 19 6 4.8560 6.5539 -2.9399 20 7 4.8866 7.0370 -4.1627 21 14 5.3098 7.6450 -1.4931 22 1 6.7679 7.5397 -1.2320 23 1 4.9639 9.0543 -1.8082 24 1 4.5586 7.2083 -0.2889 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7967 1.1281 2.1363 29 1 3.7321 -0.4388 1.2942 30 1 5.6932 -1.3333 0.1819 31 1 8.1528 -1.3770 0.0744 32 1 9.4602 0.4762 1.0335 33 1 8.3076 2.3777 2.0915 34 1 5.8477 2.4258 2.1906 35 1 3.3831 3.2377 0.5929 36 1 4.7241 2.6499 -1.9653 37 1 3.0237 3.1526 -1.8093 38 1 3.7459 5.2619 -0.7250 39 1 5.4465 4.7601 -0.8808 40 1 5.1452 7.9597 -4.3134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614799788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = -89.756412 kcal Electronic energy + Delta-G solvation = -21316.079862 eV Core-core repulsion = 18094.569390 eV Total energy + Delta-G solvation = -3221.510472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80417 -40.00036 -38.24149 -37.07897 -35.41332 -33.94763 -31.78464 -31.58082 -29.77977 -28.28778 -26.04845 -24.95203 -23.28575 -22.44921 -22.10028 -21.39454 -19.03142 -18.90767 -18.16875 -17.60785 -17.22373 -16.43230 -16.18033 -15.96616 -15.80731 -15.31738 -15.10162 -14.70186 -14.58726 -14.32710 -14.09169 -13.75533 -13.61413 -13.29988 -13.07765 -13.00564 -12.90136 -12.45721 -12.16198 -12.04000 -11.84937 -11.79165 -11.72952 -11.62310 -11.48221 -11.44505 -10.78652 -9.71533 -9.58181 -9.42062 -8.31593 -6.36155 0.57755 0.70558 1.06106 1.35311 1.37131 1.49794 1.69612 2.35265 3.01810 3.03980 3.05534 3.66599 3.98342 4.02336 4.15214 4.25504 4.28716 4.29417 4.32927 4.40338 4.46371 4.49914 4.62634 4.67904 4.80084 4.90911 4.94656 4.96339 5.19070 5.25641 5.32288 5.35680 5.45629 5.58599 5.73395 5.79969 5.84248 5.93394 6.17295 6.30083 6.30887 6.61982 6.71017 7.28489 8.85204 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.005972 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.283598 B = 4687.759086 C = 6625.995349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.436 3.564 4 O -0.538 6.538 5 C 0.103 3.897 6 H 0.120 0.880 7 C -0.052 4.052 8 C -0.078 4.078 9 C -0.125 4.125 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.139 4.139 13 C -0.102 4.102 14 N -0.649 5.649 15 C 0.087 3.913 16 C 0.001 3.999 17 C -0.534 4.534 18 H 0.030 0.970 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.953 3.047 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.250 1.250 25 H 0.051 0.949 26 H 0.137 0.863 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.347 0.653 36 H 0.064 0.936 37 H 0.009 0.991 38 H 0.014 0.986 39 H 0.027 0.973 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -19.377 15.274 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.278 3.722 4 O -0.428 6.428 5 C -0.009 4.009 6 H 0.138 0.862 7 C -0.090 4.090 8 C -0.079 4.079 9 C -0.143 4.143 10 C -0.151 4.151 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.120 4.120 14 N -0.280 5.280 15 C -0.042 4.042 16 C -0.037 4.037 17 C -0.572 4.572 18 H 0.049 0.951 19 C -0.190 4.190 20 N -0.591 5.591 21 Si 0.776 3.224 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.173 1.173 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.082 0.918 37 H 0.027 0.973 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.017 -19.093 15.190 24.398 hybrid contribution -1.108 1.257 -0.447 1.734 sum -1.091 -17.836 14.742 23.166 Atomic orbital electron populations 1.23550 0.75270 1.05785 1.02159 1.86524 1.24670 1.32488 1.83346 1.25598 0.94034 0.81535 0.71060 1.90695 1.67705 1.37671 1.46720 1.21706 0.83578 0.92409 1.03233 0.86195 1.20501 0.91692 1.01691 0.95069 1.19635 0.94708 0.94763 0.98746 1.21316 0.94951 0.98578 0.99424 1.21376 0.94330 0.99304 1.00048 1.21391 1.00691 0.94494 0.98654 1.21373 0.94950 0.98921 1.00474 1.21156 0.94029 0.97687 0.99136 1.60975 1.54554 1.01118 1.11351 1.21694 0.97845 0.96241 0.88388 1.19364 0.96698 0.92858 0.94808 1.21371 1.45720 0.97022 0.93108 0.95132 1.25979 0.94712 0.99576 0.98743 1.70062 1.50131 1.16246 1.22639 0.85613 0.79599 0.77282 0.79872 1.18821 1.20915 1.17323 0.92984 0.84517 0.91886 0.90011 0.87271 0.84266 0.84411 0.84982 0.85678 0.86233 0.83264 0.91779 0.97266 0.96795 0.95472 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.00 10.37 -51.41 -0.53 -8.53 16 3 C 0.44 12.16 7.09 71.23 0.50 12.67 16 4 O -0.54 -19.04 15.05 21.97 0.33 -18.71 16 5 C 0.10 2.67 2.49 44.17 0.11 2.78 16 6 H 0.12 3.03 7.80 -2.39 -0.02 3.02 16 7 C -0.05 -1.03 4.99 29.85 0.15 -0.88 16 8 C -0.08 -1.75 4.95 -19.86 -0.10 -1.85 16 9 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 10 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 11 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 12 C -0.14 -3.30 10.05 22.27 0.22 -3.07 16 13 C -0.10 -2.52 9.31 22.27 0.21 -2.31 16 14 N -0.65 -21.09 5.48 -495.45 -2.72 -23.81 16 15 C 0.09 3.62 5.32 86.30 0.46 4.08 16 16 C 0.00 0.02 4.30 29.85 0.13 0.15 16 17 C -0.53 -32.03 9.66 25.60 0.25 -31.78 16 18 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 19 C 0.01 0.41 5.47 84.65 0.46 0.87 16 20 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 21 Si 0.95 45.83 27.47 68.60 1.88 47.72 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 25 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 26 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 29 H 0.11 1.66 7.94 -2.39 -0.02 1.64 16 30 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.35 11.58 7.75 -89.70 -0.70 10.89 16 36 H 0.06 2.67 8.06 -2.39 -0.02 2.65 16 37 H 0.01 0.41 7.62 -2.39 -0.02 0.39 16 38 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 39 H 0.03 1.30 7.57 -2.38 -0.02 1.28 16 40 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -73.04 340.07 3.79 -69.25 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.27 Total: 19.93 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.25 Total: -25.08 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.42 Total: -84.58 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.20 Total: -27.24 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.72 kcal Total: -73.04 3.79 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614799788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.503 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds