Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47138 * 2 1 4 4 C 1.35749 * 116.99958 * 179.97438 * 3 2 1 5 5 C 1.39120 * 119.86829 * 0.02562 * 4 3 2 6 6 C 1.37607 * 120.24193 * 179.97438 * 5 4 3 7 7 C 1.39835 * 119.95748 * 0.02562 * 6 5 4 8 8 C 1.47201 * 120.13699 * 179.97438 * 7 6 5 9 9 N 1.29531 * 119.99887 * 333.48653 * 8 7 6 10 10 C 1.46498 * 120.00066 * 348.55802 * 9 8 7 11 11 C 1.52998 * 109.46793 * 118.96949 * 10 9 8 12 12 C 1.53002 * 109.46665 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.46939 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99588 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00358 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46907 * 59.99710 * 17 15 13 19 19 H 1.48500 * 109.47124 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47026 * 300.00130 * 17 15 13 21 21 C 1.40291 * 119.72641 * 0.02562 * 7 6 5 22 22 O 1.35708 * 120.11802 * 180.02562 * 21 7 6 23 23 C 1.38425 * 119.76098 * 359.71889 * 21 7 6 24 24 H 1.08995 * 109.47300 * 299.99956 * 1 2 3 25 25 H 1.09005 * 109.47023 * 59.99986 * 1 2 3 26 26 H 1.09004 * 109.46625 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47316 * 240.00449 * 2 1 3 28 28 H 1.08997 * 109.47317 * 120.00119 * 2 1 3 29 29 H 1.08010 * 119.87589 * 359.97055 * 5 4 3 30 30 H 1.08002 * 120.02370 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.99473 * 153.48032 * 8 7 6 32 32 H 1.09000 * 109.46929 * 238.96766 * 10 9 8 33 33 H 1.08995 * 109.47339 * 358.96568 * 10 9 8 34 34 H 1.09000 * 109.47234 * 299.99630 * 11 10 9 35 35 H 1.08993 * 109.47435 * 60.00244 * 11 10 9 36 36 H 1.08995 * 109.47461 * 299.99550 * 12 11 10 37 37 H 1.08997 * 109.47626 * 60.00160 * 12 11 10 38 38 H 0.97000 * 119.99435 * 180.02562 * 16 15 13 39 39 H 0.96696 * 113.99904 * 95.65593 * 22 21 7 40 40 H 1.08005 * 119.97847 * 180.27925 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 6 4.1971 0.4199 0.0005 6 6 5.5624 0.5913 0.0005 7 6 6.1044 1.8804 0.0011 8 6 7.5643 2.0683 0.0017 9 7 8.3346 1.1552 0.5025 10 6 7.7586 0.0609 1.2879 11 6 8.0666 -1.2735 0.6057 12 6 7.4656 -2.4164 1.4263 13 6 7.7684 -3.7308 0.7541 14 1 8.3327 -3.7490 -0.1666 15 6 7.3251 -4.9099 1.3145 16 7 6.6384 -4.8877 2.4359 17 14 7.6998 -6.5391 0.4808 18 1 9.1707 -6.7186 0.3838 19 1 7.1177 -7.6485 1.2779 20 1 7.1095 -6.5451 -0.8819 21 6 5.2509 2.9938 0.0022 22 8 5.7683 4.2484 0.0023 23 6 3.8792 2.8081 -0.0032 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7798 -0.5763 0.0006 30 1 6.2151 -0.2692 0.0001 31 1 7.9932 2.9675 -0.4155 32 1 8.1905 0.0656 2.2887 33 1 6.6789 0.1928 1.3575 34 1 7.6348 -1.2781 -0.3951 35 1 9.1463 -1.4053 0.5362 36 1 7.8978 -2.4117 2.4269 37 1 6.3859 -2.2848 1.4963 38 1 6.3268 -5.7174 2.8302 39 1 5.8370 4.6455 -0.8767 40 1 3.2189 3.6628 -0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728785828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = -55.907160 kcal Electronic energy + Delta-G solvation = -21008.068738 eV Core-core repulsion = 17788.026080 eV Total energy + Delta-G solvation = -3220.042658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59805 -39.89071 -38.51427 -36.59369 -35.64443 -33.57489 -32.83771 -31.12747 -30.37746 -28.86289 -25.78118 -25.01169 -23.93888 -22.80505 -22.23673 -20.84838 -19.90018 -18.49500 -18.02641 -17.66891 -17.15445 -17.13240 -16.59913 -16.49586 -15.84817 -15.26048 -14.98091 -14.72265 -14.39708 -14.23018 -14.10390 -13.70136 -13.43670 -13.35748 -13.17850 -12.84461 -12.78520 -12.61666 -12.46431 -12.12398 -11.95282 -11.84735 -11.64651 -11.51780 -11.36293 -11.04307 -10.58995 -10.19890 -9.74138 -9.07463 -8.23121 -6.35014 -0.17094 0.15199 1.37810 1.40935 1.44188 1.49111 2.05107 2.38361 2.56879 3.09638 3.22584 3.44001 3.65996 3.68264 3.91760 3.99891 4.06585 4.09653 4.27515 4.30393 4.34416 4.37993 4.54841 4.78174 4.79987 4.86329 4.89211 4.91272 5.01844 5.08527 5.13965 5.16536 5.26514 5.44580 5.47739 5.53865 5.63032 5.78493 6.18981 6.25579 6.78691 6.83598 6.86377 7.34266 8.88313 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.004830 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.206083 B = 5795.934410 C = 7655.151854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.319 6.319 4 C 0.160 3.840 5 C -0.232 4.232 6 C -0.065 4.065 7 C -0.200 4.200 8 C 0.202 3.798 9 N -0.538 5.538 10 C 0.012 3.988 11 C -0.087 4.087 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.196 3.804 22 O -0.489 6.489 23 C -0.196 4.196 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.196 0.804 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.052 0.948 36 H -0.009 1.009 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.421 0.579 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 16.856 -8.286 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.232 6.232 4 C 0.113 3.887 5 C -0.251 4.251 6 C -0.084 4.084 7 C -0.204 4.204 8 C -0.008 4.008 9 N -0.245 5.245 10 C -0.116 4.116 11 C -0.125 4.125 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.190 1.190 21 C 0.148 3.852 22 O -0.304 6.304 23 C -0.215 4.215 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.212 0.788 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.010 0.990 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.283 0.717 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.631 16.446 -7.433 20.456 hybrid contribution -0.617 -1.445 -0.340 1.607 sum -10.247 15.001 -7.773 19.760 Atomic orbital electron populations 1.21791 0.90589 1.04191 1.03678 1.23111 0.97509 0.80610 1.02092 1.86005 1.18278 1.31157 1.87784 1.19031 0.82717 0.93641 0.93310 1.21312 0.93997 0.99102 1.10715 1.21733 0.95527 0.97463 0.93684 1.20312 0.96131 0.92921 1.11000 1.25168 0.87343 0.95935 0.92318 1.72204 1.38277 1.04522 1.09501 1.22990 0.99677 0.91723 0.97231 1.21379 1.00348 0.92529 0.98235 1.18948 0.94669 0.92758 0.94444 1.21593 1.35034 0.92593 1.09195 0.92459 1.25943 0.94675 1.03260 0.95528 1.70086 1.38084 1.28612 1.20244 0.85518 0.78834 0.78151 0.78666 1.19384 1.20539 1.19036 1.17947 0.88982 0.84180 0.94106 1.84707 1.84144 1.25028 1.36517 1.20761 0.94930 0.95668 1.10140 0.91454 0.90947 0.88634 0.91231 0.92152 0.84977 0.84786 0.78764 0.91278 0.91298 0.93190 0.92962 0.99018 0.98454 0.92647 0.71708 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.04 0.84 5.45 71.98 0.39 1.23 16 3 O -0.32 -7.68 10.12 -90.74 -0.92 -8.60 16 4 C 0.16 4.16 6.69 22.59 0.15 4.31 16 5 C -0.23 -6.88 9.01 22.33 0.20 -6.68 16 6 C -0.06 -2.07 7.33 22.51 0.16 -1.91 16 7 C -0.20 -5.48 5.45 -20.04 -0.11 -5.59 16 8 C 0.20 5.43 10.75 87.39 0.94 6.37 16 9 N -0.54 -18.68 10.59 -340.99 -3.61 -22.29 16 10 C 0.01 0.48 5.42 86.38 0.47 0.95 16 11 C -0.09 -3.92 4.71 30.59 0.14 -3.77 16 12 C 0.03 1.60 4.97 29.85 0.15 1.75 16 13 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.24 5.46 84.65 0.46 0.70 16 16 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 17 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 C 0.20 4.31 6.71 22.81 0.15 4.46 16 22 O -0.49 -7.65 12.84 -90.29 -1.16 -8.81 16 23 C -0.20 -4.38 9.91 22.42 0.22 -4.16 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.35 7.65 -2.39 -0.02 1.33 16 28 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 29 H 0.13 3.87 6.27 -2.91 -0.02 3.85 16 30 H 0.13 5.01 3.51 -2.91 -0.01 5.00 16 31 H 0.20 3.53 7.90 -2.91 -0.02 3.51 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.07 2.70 3.86 -2.69 -0.01 2.69 16 34 H 0.05 2.19 6.99 -2.39 -0.02 2.17 16 35 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.42 1.77 9.06 -74.06 -0.67 1.10 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -71.63 332.94 1.31 -70.31 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.38 Total: 14.61 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 4.31 Total: -35.26 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -3.33 Total: -78.76 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -2.08 Total: -17.41 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.63 1.31 -70.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728785828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds