Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00111 * 2 1 4 4 C 1.53006 * 109.46895 * 66.05297 * 3 2 1 5 5 C 1.52993 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46991 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00241 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99878 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47118 * 89.99676 * 10 8 6 12 12 H 1.48496 * 109.47181 * 210.00170 * 10 8 6 13 13 H 1.48502 * 109.46962 * 329.99942 * 10 8 6 14 14 C 1.46900 * 110.99668 * 236.04916 * 2 1 3 15 15 H 1.09003 * 109.47314 * 60.98280 * 14 2 1 16 16 C 1.50702 * 109.47122 * 300.98680 * 14 2 1 17 17 O 1.20827 * 120.00197 * 332.92434 * 16 14 2 18 18 O 1.34237 * 120.00130 * 152.92115 * 16 14 2 19 19 C 1.50697 * 109.47235 * 180.99004 * 14 2 1 20 20 C 1.38228 * 120.00149 * 45.36904 * 19 14 2 21 21 C 1.38237 * 119.99973 * 179.81391 * 20 19 14 22 22 C 1.38231 * 120.00165 * 0.39969 * 21 20 19 23 23 C 1.38240 * 119.99725 * 359.85396 * 22 21 20 24 24 C 1.38233 * 120.00208 * 359.95721 * 23 22 21 25 25 H 1.09002 * 109.47147 * 178.17983 * 1 2 3 26 26 H 1.09001 * 109.46877 * 298.17413 * 1 2 3 27 27 H 1.08995 * 109.47472 * 58.17405 * 1 2 3 28 28 H 1.08995 * 109.46837 * 186.04588 * 3 2 1 29 29 H 1.08994 * 109.47317 * 306.04651 * 3 2 1 30 30 H 1.09003 * 109.46631 * 299.99573 * 4 3 2 31 31 H 1.08994 * 109.47140 * 59.99573 * 4 3 2 32 32 H 1.09000 * 109.47552 * 299.99762 * 5 4 3 33 33 H 1.09004 * 109.47533 * 59.99919 * 5 4 3 34 34 H 0.97004 * 120.00138 * 180.02562 * 9 8 6 35 35 H 0.96695 * 116.99809 * 179.97438 * 18 16 14 36 36 H 1.07996 * 120.00435 * 0.02562 * 20 19 14 37 37 H 1.08003 * 120.00202 * 180.23155 * 21 20 19 38 38 H 1.08001 * 120.00296 * 179.83525 * 22 21 20 39 39 H 1.07998 * 120.00002 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00340 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3184 5 6 2.1804 3.4854 1.3186 6 6 1.8215 4.1613 2.6169 7 1 1.2586 3.6256 3.3670 8 6 2.2118 5.4635 2.8472 9 7 1.8981 6.0534 3.9799 10 14 3.1848 6.3903 1.5496 11 1 2.2480 7.0943 0.6374 12 1 4.0715 7.3816 2.2099 13 1 4.0083 5.4316 0.7698 14 6 1.9954 -0.7659 -1.1376 15 1 1.6602 -0.3097 -2.0691 16 6 1.4924 -2.1846 -1.0638 17 8 1.2080 -2.6699 0.0055 18 8 1.3604 -2.9092 -2.1861 19 6 3.5016 -0.7640 -1.0907 20 6 4.1563 -1.0071 0.1021 21 6 5.5380 -1.0090 0.1443 22 6 6.2650 -0.7597 -1.0046 23 6 5.6102 -0.5114 -2.1965 24 6 4.2285 -0.5133 -2.2396 25 1 -0.3633 -1.0272 -0.0326 26 1 -0.3633 0.4852 0.9059 27 1 -0.3634 0.5419 -0.8731 28 1 3.0797 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 0.5473 2.0844 1.4266 31 1 2.0659 1.5013 2.1492 32 1 3.2647 3.4580 1.2105 33 1 1.7464 4.0417 0.4877 34 1 2.1723 6.9697 4.1418 35 1 1.0345 -3.8143 -2.0885 36 1 3.5884 -1.1988 1.0005 37 1 6.0496 -1.2027 1.0756 38 1 7.3445 -0.7587 -0.9711 39 1 6.1781 -0.3162 -3.0942 40 1 3.7169 -0.3189 -3.1706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737438458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -61.943040 kcal Electronic energy + Delta-G solvation = -21566.290523 eV Core-core repulsion = 18345.986129 eV Total energy + Delta-G solvation = -3220.304393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84863 -39.17663 -37.40530 -36.10733 -33.87232 -32.24761 -31.21280 -30.94020 -28.00882 -27.19839 -24.92296 -22.71561 -22.51459 -21.96444 -20.19943 -19.92907 -18.24301 -17.24166 -16.76752 -16.49044 -16.03555 -15.72089 -14.99732 -14.66673 -14.52961 -14.09988 -13.90675 -13.56033 -13.40520 -12.94030 -12.81576 -12.60303 -12.43203 -11.96309 -11.88652 -11.65538 -11.36642 -11.25752 -11.09231 -10.92329 -10.68027 -10.60324 -9.93618 -9.68652 -9.59134 -9.14881 -8.96351 -8.83229 -8.51022 -8.32189 -6.01297 -3.98855 1.14898 1.36993 2.09261 2.72380 3.31947 3.39440 3.43468 3.64061 4.07182 4.47607 4.47783 4.75772 4.93496 5.02411 5.07592 5.11545 5.31093 5.33243 5.41483 5.48281 5.56731 5.67029 5.78852 5.85050 6.00619 6.04151 6.16005 6.32182 6.35410 6.44466 6.47827 6.52931 6.58022 6.86321 6.92463 7.04651 7.11883 7.36949 7.47739 7.78527 7.82828 8.57989 9.04559 9.61393 11.12317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004842 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.649266 B = 5780.816809 C = 6769.247460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.519 5.519 3 C 0.055 3.945 4 C -0.095 4.095 5 C -0.012 4.012 6 C -0.517 4.517 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.265 1.265 14 C 0.138 3.862 15 H 0.077 0.923 16 C 0.486 3.514 17 O -0.488 6.488 18 O -0.519 6.519 19 C -0.090 4.090 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.103 4.103 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.262 0.738 35 H 0.409 0.591 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -17.335 -15.488 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.244 5.244 3 C -0.072 4.072 4 C -0.133 4.133 5 C -0.050 4.050 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.190 1.190 14 C 0.028 3.972 15 H 0.095 0.905 16 C 0.326 3.674 17 O -0.373 6.373 18 O -0.330 6.330 19 C -0.091 4.091 20 C -0.095 4.095 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.121 4.121 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.267 0.733 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.210 -17.136 -14.694 22.963 hybrid contribution -0.036 0.470 -1.257 1.343 sum 4.174 -16.667 -15.951 23.444 Atomic orbital electron populations 1.22550 0.86591 1.01831 1.02143 1.61894 1.08406 1.15270 1.38868 1.22441 1.00320 0.84855 0.99558 1.21469 1.00655 0.96856 0.94353 1.19541 0.96064 0.91943 0.97444 1.21135 1.35398 0.97809 1.01178 0.90997 1.25028 0.95660 0.97530 0.95286 1.69917 1.47094 1.13207 1.24168 0.86789 0.80598 0.79818 0.82160 1.20385 1.21413 1.19007 1.19955 0.92739 0.88436 0.96035 0.90516 1.23162 0.74200 0.88671 0.81400 1.90730 1.44962 1.71454 1.30154 1.84531 1.79679 1.30911 1.37929 1.19236 0.91949 1.03310 0.94596 1.21201 0.94309 0.96119 0.97897 1.21228 0.94053 1.00331 0.98543 1.21229 0.99958 0.98840 0.92947 1.21061 0.94117 1.01082 0.98167 1.21011 0.94282 0.99380 0.97428 0.91678 0.89476 0.95482 0.90446 0.94916 0.92690 0.91784 0.96623 0.97326 0.92796 0.73254 0.84568 0.85703 0.86047 0.85928 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.96 60.06 0.54 0.77 16 2 N -0.52 -7.70 3.85 -237.70 -0.91 -8.61 16 3 C 0.05 0.90 4.66 -3.82 -0.02 0.88 16 4 C -0.10 -1.91 5.08 -26.73 -0.14 -2.05 16 5 C -0.01 -0.29 4.04 -27.89 -0.11 -0.40 16 6 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 7 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 10 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.14 1.77 2.18 -70.02 -0.15 1.61 16 15 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 16 C 0.49 6.07 6.35 36.01 0.23 6.30 16 17 O -0.49 -7.45 16.23 -18.75 -0.30 -7.76 16 18 O -0.52 -4.81 13.42 -39.28 -0.53 -5.34 16 19 C -0.09 -1.15 3.43 -104.63 -0.36 -1.51 16 20 C -0.08 -1.04 8.57 -39.59 -0.34 -1.38 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.11 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 24 C -0.10 -1.14 9.67 -39.58 -0.38 -1.52 16 25 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 26 H 0.09 1.27 6.56 -51.93 -0.34 0.93 16 27 H 0.03 0.34 8.13 -51.93 -0.42 -0.09 16 28 H 0.08 1.30 6.22 -51.93 -0.32 0.97 16 29 H 0.03 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.05 1.09 6.59 -51.93 -0.34 0.75 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.41 2.00 9.10 45.56 0.41 2.41 16 36 H 0.14 2.01 7.89 -52.49 -0.41 1.59 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.12 8.00 -52.49 -0.42 0.70 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -33.59 331.97 -8.04 -41.63 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.04 Total: 1.10 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.36 Total: -15.83 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.14 Total: -36.07 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.83 Total: -13.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.59 -8.04 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737438458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.315 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds