Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00111 * 2 1 4 4 C 1.53006 * 109.46895 * 66.05297 * 3 2 1 5 5 C 1.52993 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46991 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00241 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99878 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99938 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47118 * 89.99676 * 10 8 6 12 12 H 1.48496 * 109.47181 * 210.00170 * 10 8 6 13 13 H 1.48502 * 109.46962 * 329.99942 * 10 8 6 14 14 C 1.46900 * 110.99668 * 236.04916 * 2 1 3 15 15 H 1.09003 * 109.47314 * 60.98280 * 14 2 1 16 16 C 1.50702 * 109.47122 * 300.98680 * 14 2 1 17 17 O 1.20827 * 120.00197 * 332.92434 * 16 14 2 18 18 O 1.34237 * 120.00130 * 152.92115 * 16 14 2 19 19 C 1.50697 * 109.47235 * 180.99004 * 14 2 1 20 20 C 1.38228 * 120.00149 * 45.36904 * 19 14 2 21 21 C 1.38237 * 119.99973 * 179.81391 * 20 19 14 22 22 C 1.38231 * 120.00165 * 0.39969 * 21 20 19 23 23 C 1.38240 * 119.99725 * 359.85396 * 22 21 20 24 24 C 1.38233 * 120.00208 * 359.95721 * 23 22 21 25 25 H 1.09002 * 109.47147 * 178.17983 * 1 2 3 26 26 H 1.09001 * 109.46877 * 298.17413 * 1 2 3 27 27 H 1.08995 * 109.47472 * 58.17405 * 1 2 3 28 28 H 1.08995 * 109.46837 * 186.04588 * 3 2 1 29 29 H 1.08994 * 109.47317 * 306.04651 * 3 2 1 30 30 H 1.09003 * 109.46631 * 299.99573 * 4 3 2 31 31 H 1.08994 * 109.47140 * 59.99573 * 4 3 2 32 32 H 1.09000 * 109.47552 * 299.99762 * 5 4 3 33 33 H 1.09004 * 109.47533 * 59.99919 * 5 4 3 34 34 H 0.97004 * 120.00138 * 180.02562 * 9 8 6 35 35 H 0.96695 * 116.99809 * 179.97438 * 18 16 14 36 36 H 1.07996 * 120.00435 * 0.02562 * 20 19 14 37 37 H 1.08003 * 120.00202 * 180.23155 * 21 20 19 38 38 H 1.08001 * 120.00296 * 179.83525 * 22 21 20 39 39 H 1.07998 * 120.00002 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00340 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 1.3184 5 6 2.1804 3.4854 1.3186 6 6 1.8215 4.1613 2.6169 7 1 1.2586 3.6256 3.3670 8 6 2.2118 5.4635 2.8472 9 7 1.8981 6.0534 3.9799 10 14 3.1848 6.3903 1.5496 11 1 2.2480 7.0943 0.6374 12 1 4.0715 7.3816 2.2099 13 1 4.0083 5.4316 0.7698 14 6 1.9954 -0.7659 -1.1376 15 1 1.6602 -0.3097 -2.0691 16 6 1.4924 -2.1846 -1.0638 17 8 1.2080 -2.6699 0.0055 18 8 1.3604 -2.9092 -2.1861 19 6 3.5016 -0.7640 -1.0907 20 6 4.1563 -1.0071 0.1021 21 6 5.5380 -1.0090 0.1443 22 6 6.2650 -0.7597 -1.0046 23 6 5.6102 -0.5114 -2.1965 24 6 4.2285 -0.5133 -2.2396 25 1 -0.3633 -1.0272 -0.0326 26 1 -0.3633 0.4852 0.9059 27 1 -0.3634 0.5419 -0.8731 28 1 3.0797 1.3443 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 0.5473 2.0844 1.4266 31 1 2.0659 1.5013 2.1492 32 1 3.2647 3.4580 1.2105 33 1 1.7464 4.0417 0.4877 34 1 2.1723 6.9697 4.1418 35 1 1.0345 -3.8143 -2.0885 36 1 3.5884 -1.1988 1.0005 37 1 6.0496 -1.2027 1.0756 38 1 7.3445 -0.7587 -0.9711 39 1 6.1781 -0.3162 -3.0942 40 1 3.7169 -0.3189 -3.1706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737438458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -84.036286 kcal Electronic energy + Delta-G solvation = -21567.248558 eV Core-core repulsion = 18345.986129 eV Total energy + Delta-G solvation = -3221.262428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80617 -40.05893 -38.50297 -37.05702 -35.69873 -33.87715 -32.58867 -31.77804 -29.48583 -28.32759 -26.43351 -23.73526 -23.57282 -23.18363 -21.70761 -21.11323 -19.20513 -18.83250 -18.09889 -17.59690 -17.03002 -16.72913 -16.38815 -15.93195 -15.77794 -15.35389 -15.09344 -14.83179 -14.67960 -14.24340 -13.90831 -13.75913 -13.69735 -13.36716 -13.31249 -12.92767 -12.75087 -12.45043 -12.33935 -12.05785 -11.93784 -11.80019 -11.70920 -11.49798 -11.39923 -11.23183 -10.74904 -9.81090 -9.70686 -9.42540 -8.27969 -6.32317 0.29124 0.51780 1.14628 1.36522 1.39172 1.51389 1.84208 2.37770 2.71419 3.07369 3.09436 3.54461 3.87002 4.03198 4.16177 4.18240 4.20532 4.30993 4.32799 4.44668 4.51100 4.63145 4.66005 4.71810 4.83628 4.94621 4.95162 5.02588 5.11148 5.17766 5.48864 5.52827 5.54620 5.59415 5.61017 5.63954 5.67311 5.92629 5.93652 6.09811 6.31125 6.75805 6.97108 7.32158 8.89246 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.004842 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.649266 B = 5780.816809 C = 6769.247460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.071 3.929 4 C -0.087 4.087 5 C -0.007 4.007 6 C -0.532 4.532 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.954 5.954 10 Si 0.953 3.047 11 H -0.264 1.264 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.137 3.863 15 H 0.099 0.901 16 C 0.493 3.507 17 O -0.524 6.524 18 O -0.507 6.507 19 C -0.103 4.103 20 C -0.100 4.100 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.104 4.104 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.429 0.571 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -17.444 -19.246 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.055 4.055 4 C -0.125 4.125 5 C -0.045 4.045 6 C -0.570 4.570 7 H 0.046 0.954 8 C -0.194 4.194 9 N -0.595 5.595 10 Si 0.776 3.224 11 H -0.189 1.189 12 H -0.210 1.210 13 H -0.168 1.168 14 C 0.028 3.972 15 H 0.116 0.884 16 C 0.335 3.665 17 O -0.413 6.413 18 O -0.320 6.320 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.155 4.155 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.123 4.123 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.291 0.709 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.656 -17.289 -18.480 25.931 hybrid contribution -0.521 0.397 -0.038 0.656 sum 5.135 -16.892 -18.518 25.586 Atomic orbital electron populations 1.22508 0.86158 1.02060 1.02129 1.61700 1.08914 1.14469 1.40932 1.22099 1.00381 0.85731 0.97313 1.21270 0.99975 0.95011 0.96222 1.19458 0.96323 0.93725 0.94959 1.21489 1.34869 0.98218 1.02444 0.95444 1.26060 0.96886 0.98623 0.97833 1.70082 1.48790 1.13880 1.26723 0.85615 0.79211 0.78475 0.79107 1.18917 1.21014 1.16817 1.20005 0.92968 0.88455 0.95776 0.88351 1.23095 0.73287 0.88755 0.81392 1.90726 1.46724 1.72226 1.31580 1.84471 1.79156 1.32275 1.36135 1.19312 0.91884 1.04180 0.94972 1.21116 0.95061 0.98082 0.97621 1.21413 0.93642 1.00691 0.99748 1.21560 1.01248 0.97831 0.92515 1.21463 0.94092 0.99654 0.99040 1.21310 0.94809 0.98575 0.97574 0.91442 0.91081 0.93714 0.90485 0.93525 0.93170 0.93748 0.96262 0.96050 0.92518 0.70885 0.87179 0.85080 0.83648 0.83007 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.96 127.69 1.14 1.66 16 2 N -0.53 -15.51 3.85 -905.93 -3.48 -18.99 16 3 C 0.07 2.26 4.66 86.31 0.40 2.67 16 4 C -0.09 -3.52 5.08 30.59 0.16 -3.36 16 5 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 6 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 7 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 8 C 0.00 0.14 5.47 84.66 0.46 0.60 16 9 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 10 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 14 C 0.14 3.27 2.18 43.42 0.09 3.36 16 15 H 0.10 1.92 7.95 -2.39 -0.02 1.90 16 16 C 0.49 11.67 6.35 71.24 0.45 12.12 16 17 O -0.52 -15.98 16.23 21.96 0.36 -15.62 16 18 O -0.51 -8.13 13.42 -51.49 -0.69 -8.82 16 19 C -0.10 -2.45 3.43 -19.87 -0.07 -2.52 16 20 C -0.10 -2.69 8.57 22.27 0.19 -2.50 16 21 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 22 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 24 C -0.10 -1.97 9.67 22.27 0.22 -1.75 16 25 H 0.07 1.78 6.16 -2.39 -0.01 1.76 16 26 H 0.07 2.11 6.56 -2.39 -0.02 2.09 16 27 H 0.04 1.03 8.13 -2.39 -0.02 1.01 16 28 H 0.08 2.46 6.22 -2.39 -0.01 2.45 16 29 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.05 2.05 6.59 -2.39 -0.02 2.03 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 33 H 0.02 0.96 7.57 -2.38 -0.02 0.94 16 34 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 35 H 0.43 3.15 9.10 -74.06 -0.67 2.48 16 36 H 0.11 3.45 7.89 -2.91 -0.02 3.42 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.15 2.01 8.00 -2.91 -0.02 1.99 16 Total: -1.00 -74.52 331.97 2.76 -71.75 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.31 Total: 13.90 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.09 Total: -27.90 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -3.18 Total: -79.77 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.33 Total: -24.44 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -74.52 2.76 -71.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737438458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.283 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds