Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00278 * 2 1 4 4 H 1.08996 * 110.27567 * 27.91465 * 3 2 1 5 5 C 1.54596 * 110.30932 * 265.71727 * 3 2 1 6 6 C 1.54936 * 102.91935 * 219.12580 * 5 3 2 7 7 N 1.48536 * 103.22926 * 37.41407 * 6 5 3 8 8 C 1.46896 * 111.00312 * 200.27701 * 7 6 5 9 9 C 1.50697 * 109.47261 * 287.39828 * 8 7 6 10 10 C 1.38307 * 119.93113 * 269.72630 * 9 8 7 11 11 C 1.38102 * 120.06553 * 179.72484 * 10 9 8 12 12 C 1.38869 * 119.93455 * 0.54626 * 11 10 9 13 13 O 1.35751 * 120.07336 * 179.75218 * 12 11 10 14 14 C 1.34825 * 117.00428 * 174.44542 * 13 12 11 15 15 H 1.08000 * 120.00213 * 5.04370 * 14 13 12 16 16 C 1.38661 * 119.99982 * 185.05629 * 14 13 12 17 17 N 1.31550 * 119.99934 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99986 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47025 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46970 * 119.99588 * 18 16 14 21 21 H 1.48498 * 109.47184 * 239.99819 * 18 16 14 22 22 C 1.38876 * 119.86319 * 359.72600 * 12 11 10 23 23 C 1.38103 * 119.93104 * 0.02562 * 22 12 11 24 24 C 1.47898 * 105.81809 * 320.79381 * 7 6 5 25 25 H 1.09001 * 109.47373 * 59.99543 * 1 2 3 26 26 H 1.08998 * 109.46649 * 299.99869 * 1 2 3 27 27 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.08993 * 110.72655 * 337.48206 * 5 3 2 29 29 H 1.08997 * 110.72471 * 100.76906 * 5 3 2 30 30 H 1.09004 * 110.67187 * 278.98052 * 6 5 3 31 31 H 1.09004 * 110.81269 * 155.91863 * 6 5 3 32 32 H 1.09006 * 109.47062 * 47.39424 * 8 7 6 33 33 H 1.08999 * 109.47304 * 167.39803 * 8 7 6 34 34 H 1.07993 * 119.96402 * 0.02562 * 10 9 8 35 35 H 1.08011 * 120.02813 * 180.27313 * 11 10 9 36 36 H 0.97002 * 120.00361 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.03730 * 179.97438 * 22 12 11 38 38 H 1.08002 * 119.96732 * 180.02562 * 23 22 12 39 39 H 1.08999 * 109.91752 * 265.97144 * 24 7 6 40 40 H 1.09006 * 110.08012 * 144.77419 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3386 2.0179 0.4787 5 6 2.3274 1.7515 -1.4458 6 6 3.6858 2.4810 -1.2931 7 7 4.3955 1.6678 -0.2727 8 6 5.4769 2.4383 0.3556 9 6 6.6127 2.5988 -0.6216 10 6 7.6262 1.6586 -0.6623 11 6 8.6655 1.8000 -1.5607 12 6 8.6983 2.8935 -2.4159 13 8 9.7212 3.0380 -3.2966 14 6 9.6335 4.0571 -4.1749 15 1 8.8185 4.7622 -4.1044 16 6 10.5897 4.1999 -5.1689 17 7 11.5826 3.3413 -5.2547 18 14 10.4679 5.6116 -6.3862 19 1 9.2677 6.4297 -6.0769 20 1 11.6838 6.4581 -6.2858 21 1 10.3548 5.0689 -7.7638 22 6 7.6821 3.8390 -2.3688 23 6 6.6428 3.6893 -1.4717 24 6 3.3702 1.2849 0.7221 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.4253 0.8878 -2.1033 29 1 1.5624 2.4343 -1.8154 30 1 3.5372 3.5005 -0.9372 31 1 4.2340 2.4799 -2.2353 32 1 5.1032 3.4211 0.6430 33 1 5.8314 1.9111 1.2414 34 1 7.6022 0.8104 0.0058 35 1 9.4544 1.0630 -1.5950 36 1 12.2517 3.4413 -5.9498 37 1 7.7050 4.6908 -3.0323 38 1 5.8520 4.4240 -1.4348 39 1 3.3650 2.0005 1.5442 40 1 3.5735 0.2839 1.1027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752089734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = -38.501847 kcal Electronic energy + Delta-G solvation = -20893.107670 eV Core-core repulsion = 17673.819763 eV Total energy + Delta-G solvation = -3219.287907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65080 -38.85801 -37.27611 -36.11599 -32.48798 -31.77717 -30.15896 -29.18788 -28.56127 -26.43576 -25.54364 -24.37201 -21.99825 -21.30501 -20.95468 -20.25297 -17.94008 -17.17804 -16.89938 -16.24739 -15.42405 -14.92617 -14.82523 -14.60648 -14.49623 -13.98386 -13.90242 -13.52140 -13.26608 -12.85058 -12.67272 -12.51228 -12.23507 -12.09638 -11.79478 -11.66897 -11.46467 -11.27470 -11.14391 -10.86897 -10.70409 -10.57106 -10.51966 -10.39679 -9.79360 -9.29575 -8.81826 -8.33854 -8.11842 -7.13737 -6.42883 -4.01547 2.27004 2.32319 3.12971 3.14641 3.20133 3.51662 3.98023 4.04461 4.46450 4.57550 4.71949 4.83941 5.04068 5.10118 5.12428 5.18450 5.22738 5.31156 5.35141 5.37575 5.49169 5.54821 5.67199 5.74279 5.77272 5.82482 5.91349 5.99043 6.08118 6.25718 6.46040 6.74773 6.86863 6.93872 7.01315 7.09789 7.13386 7.30945 7.44038 7.48092 7.87407 8.02465 9.02971 9.74192 10.75408 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.003240 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.553311 B = 8640.560757 C = 9084.956282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.079 3.921 4 H 0.065 0.935 5 C -0.146 4.146 6 C 0.040 3.960 7 N -0.506 5.506 8 C 0.105 3.895 9 C -0.177 4.177 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.234 4.234 23 C -0.065 4.065 24 C 0.036 3.964 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.269 0.731 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 -1.375 10.071 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.020 3.980 4 H 0.083 0.917 5 C -0.184 4.184 6 C -0.088 4.088 7 N -0.231 5.231 8 C -0.022 4.022 9 C -0.178 4.178 10 C -0.072 4.072 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.254 4.254 23 C -0.084 4.084 24 C -0.092 4.092 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.189 -2.160 9.669 20.712 hybrid contribution -0.664 1.747 -0.305 1.894 sum -18.853 -0.413 9.365 21.055 Atomic orbital electron populations 1.22774 0.81401 1.02691 0.99759 1.87987 1.19295 1.27381 1.94920 1.23024 0.94519 0.84516 0.95893 0.91711 1.23033 0.97085 1.01159 0.97128 1.23187 0.93331 0.94469 0.97815 1.64853 1.08102 1.38886 1.11240 1.20980 0.90443 0.95275 0.95546 1.19020 0.97701 0.98312 1.02774 1.20458 0.92846 0.96998 0.96854 1.20217 1.01631 0.99028 1.00420 1.19391 0.87515 0.92770 0.90130 1.83979 1.36560 1.48096 1.39618 1.21362 1.12392 1.04643 1.08299 0.89083 1.25285 0.95137 0.98681 0.97463 1.70046 1.12084 1.34941 1.32754 0.85656 0.78595 0.79623 0.79594 1.19143 1.20174 1.20153 1.21108 0.97466 1.02464 1.04339 1.20564 0.96778 0.96354 0.94656 1.22918 0.89854 1.02335 0.94087 0.94125 0.94234 0.89675 0.89520 0.91180 0.93933 0.89183 0.94728 0.90757 0.87077 0.86576 0.92100 0.85700 0.88078 0.93245 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.23 10.29 -35.23 -0.36 -4.59 16 3 C 0.08 0.82 3.48 -25.37 -0.09 0.73 16 4 H 0.06 0.55 7.81 -51.93 -0.41 0.15 16 5 C -0.15 -1.58 6.80 -24.87 -0.17 -1.75 16 6 C 0.04 0.50 5.68 -1.90 -0.01 0.49 16 7 N -0.51 -6.90 5.23 -231.89 -1.21 -8.11 16 8 C 0.10 1.45 4.86 -4.98 -0.02 1.43 16 9 C -0.18 -3.06 5.16 -104.57 -0.54 -3.60 16 10 C -0.05 -0.97 9.69 -39.61 -0.38 -1.36 16 11 C -0.19 -4.19 9.99 -39.40 -0.39 -4.58 16 12 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 13 O -0.18 -5.18 9.76 0.06 0.00 -5.18 16 14 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 18 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 23 C -0.06 -1.19 8.82 -39.61 -0.35 -1.54 16 24 C 0.04 0.41 6.48 -2.76 -0.02 0.39 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.25 8.10 -51.93 -0.42 -0.17 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.49 7.81 -51.93 -0.41 0.09 16 31 H 0.09 1.30 7.84 -51.93 -0.41 0.89 16 32 H 0.03 0.44 7.77 -51.93 -0.40 0.04 16 33 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.05 0.49 7.77 -51.93 -0.40 0.08 16 40 H 0.09 1.08 7.96 -51.93 -0.41 0.66 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -31.30 331.36 -8.09 -39.38 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.94 Total: 2.82 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.31 Total: -20.15 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: -0.46 Total: -32.91 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.36 Total: -9.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.30 -8.09 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752089734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.882 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds