Wall clock time and date at job start Mon Mar 30 2020 01:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47315 * 2 1 4 4 C 1.35901 * 116.99996 * 180.02562 * 3 2 1 5 5 C 1.38795 * 120.02623 * 359.72807 * 4 3 2 6 6 C 1.38154 * 120.05039 * 179.69557 * 5 4 3 7 7 C 1.38193 * 120.11228 * 0.59954 * 6 5 4 8 8 C 1.50699 * 119.97613 * 179.69721 * 7 6 5 9 9 N 1.46502 * 109.47272 * 259.97908 * 8 7 6 10 10 C 1.36936 * 119.99831 * 89.99837 * 9 8 7 11 11 H 1.08004 * 120.00124 * 304.50616 * 10 9 8 12 12 C 1.38814 * 119.99754 * 124.50979 * 10 9 8 13 13 N 1.31621 * 119.99569 * 165.15921 * 12 10 9 14 14 Si 1.86790 * 120.00123 * 345.16418 * 12 10 9 15 15 H 1.48497 * 109.47564 * 92.39653 * 14 12 10 16 16 H 1.48509 * 109.47003 * 212.39524 * 14 12 10 17 17 H 1.48502 * 109.47271 * 332.39042 * 14 12 10 18 18 C 1.46494 * 119.99721 * 269.99873 * 9 8 7 19 19 C 1.53004 * 117.49600 * 183.33295 * 18 9 8 20 20 C 1.52999 * 117.50102 * 114.67592 * 18 9 8 21 21 C 1.38752 * 120.05294 * 359.67495 * 7 6 5 22 22 O 1.35899 * 120.02529 * 180.02562 * 21 7 6 23 23 C 1.38613 * 120.02417 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46519 * 299.99915 * 1 2 3 25 25 H 1.08998 * 109.47096 * 59.99741 * 1 2 3 26 26 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46519 * 240.00085 * 2 1 3 28 28 H 1.08998 * 109.47372 * 120.00733 * 2 1 3 29 29 H 1.08004 * 119.97029 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.94325 * 180.29492 * 6 5 4 31 31 H 1.09002 * 109.46733 * 19.97772 * 8 7 6 32 32 H 1.09000 * 109.47526 * 139.97570 * 8 7 6 33 33 H 0.97006 * 119.99876 * 180.02562 * 13 12 10 34 34 H 1.09002 * 115.55246 * 328.99971 * 18 9 8 35 35 H 1.08999 * 117.50133 * 0.02562 * 19 18 9 36 36 H 1.09008 * 117.49770 * 145.01815 * 19 18 9 37 37 H 1.08996 * 117.50167 * 214.97610 * 20 18 9 38 38 H 1.09006 * 117.49391 * 359.97391 * 20 18 9 39 39 H 0.96698 * 114.00122 * 269.97575 * 22 21 7 40 40 H 1.07992 * 120.05932 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1997 0.4249 0.0046 6 6 5.5694 0.6052 -0.0023 7 6 6.1007 1.8809 -0.0018 8 6 7.5953 2.0741 -0.0025 9 7 8.0495 2.3743 1.3576 10 6 8.4115 1.3563 2.1989 11 1 7.7192 0.5531 2.4040 12 6 9.6684 1.3567 2.7882 13 7 9.9181 0.5605 3.8061 14 14 11.0050 2.4872 2.1367 15 1 10.9811 3.7671 2.8893 16 1 12.3294 1.8374 2.3072 17 1 10.7673 2.7557 0.6956 18 6 8.1163 3.7636 1.8176 19 6 8.6723 4.0173 3.2202 20 6 7.1745 4.1792 2.9494 21 6 5.2592 2.9841 -0.0013 22 8 5.7823 4.2384 -0.0014 23 6 3.8841 2.8059 -0.0011 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7868 -0.5731 0.0095 30 1 6.2260 -0.2523 -0.0030 31 1 8.0792 1.1630 -0.3543 32 1 7.8545 2.9015 -0.6630 33 1 10.7963 0.5610 4.2182 34 1 8.3355 4.5036 1.0479 35 1 8.9887 3.1506 3.8006 36 1 9.2569 4.9245 3.3734 37 1 6.7742 5.1927 2.9245 38 1 6.5047 3.4189 3.3515 39 1 5.9338 4.6015 0.8820 40 1 3.2275 3.6633 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769095197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:21 Heat of formation + Delta-G solvation = -5.081735 kcal Electronic energy + Delta-G solvation = -21994.309635 eV Core-core repulsion = 18776.470933 eV Total energy + Delta-G solvation = -3217.838702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06601 -38.50543 -37.02292 -35.75088 -33.26628 -32.17684 -31.55756 -29.75906 -29.03576 -25.49775 -23.93652 -23.20324 -21.99434 -21.64475 -20.84009 -19.69425 -18.55880 -16.86256 -16.62833 -16.06663 -15.95470 -15.56272 -14.77209 -14.60554 -14.39172 -13.97016 -13.54991 -13.24070 -13.17030 -13.04638 -12.72210 -12.15862 -12.03635 -11.90252 -11.71856 -11.49267 -11.10012 -10.79144 -10.77315 -10.57042 -10.45600 -10.36981 -10.09034 -9.80124 -9.52104 -9.18470 -8.47717 -8.41384 -7.71846 -6.49007 -6.04355 -3.74649 1.60199 1.79509 3.23746 3.37360 3.46877 3.55278 3.96528 4.50258 4.73499 4.79599 4.81461 4.88243 5.00441 5.10757 5.19523 5.29833 5.31868 5.39240 5.57813 5.64228 5.72434 5.81562 5.87000 5.96192 6.00575 6.07205 6.19045 6.37907 6.40351 6.55563 6.58480 6.63476 6.79005 6.93392 6.97434 7.12558 7.26683 7.58838 8.05762 8.06859 8.49088 8.97478 9.60484 10.10427 11.05030 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.004986 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.830166 B = 5613.951116 C = 6021.525854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.128 3.872 5 C -0.219 4.219 6 C -0.051 4.051 7 C -0.135 4.135 8 C 0.187 3.813 9 N -0.565 5.565 10 C -0.284 4.284 11 H 0.070 0.930 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.885 3.115 15 H -0.270 1.270 16 H -0.305 1.305 17 H -0.269 1.269 18 C 0.110 3.890 19 C -0.195 4.195 20 C -0.228 4.228 21 C 0.155 3.845 22 O -0.498 6.498 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 1.932 -7.197 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.083 3.917 5 C -0.238 4.238 6 C -0.070 4.070 7 C -0.138 4.138 8 C 0.062 3.938 9 N -0.284 5.284 10 C -0.412 4.412 11 H 0.087 0.913 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.714 3.286 15 H -0.196 1.196 16 H -0.233 1.233 17 H -0.194 1.194 18 C 0.002 3.998 19 C -0.233 4.233 20 C -0.269 4.269 21 C 0.110 3.890 22 O -0.310 6.310 23 C -0.205 4.205 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.249 0.751 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.632 1.916 -7.691 14.913 hybrid contribution 0.785 0.382 0.564 1.039 sum -11.848 2.298 -7.127 14.016 Atomic orbital electron populations 1.21769 0.93079 1.02620 1.03341 1.22719 0.95481 0.82378 1.01438 1.86007 1.19449 1.28900 1.89187 1.18588 0.81814 0.93615 0.97670 1.21167 0.94484 0.97510 1.10607 1.20782 0.93736 0.96934 0.95584 1.21176 0.99377 0.92011 1.01208 1.19845 0.87004 0.99923 0.87033 1.43563 1.75147 1.00401 1.09289 1.18536 0.97093 1.02826 1.22780 0.91280 1.25858 0.97431 0.95673 0.95584 1.69866 1.22711 1.39659 1.21403 0.86797 0.80418 0.80869 0.80558 1.19584 1.23290 1.19387 1.21413 1.01197 0.88015 0.89153 1.23500 0.95251 1.03047 1.01514 1.23480 0.93971 1.00198 1.09208 1.17891 0.89193 0.84434 0.97523 1.84668 1.84366 1.27862 1.34121 1.20473 0.94644 0.95178 1.10231 0.91616 0.91688 0.90554 0.92194 0.92051 0.85996 0.85375 0.91583 0.92934 0.92520 0.89005 0.86192 0.90603 0.90907 0.89231 0.75077 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.59 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.63 10.13 -19.43 -0.20 -4.83 16 4 C 0.13 2.05 6.68 -39.24 -0.26 1.79 16 5 C -0.22 -3.41 9.04 -39.41 -0.36 -3.77 16 6 C -0.05 -0.89 9.66 -39.63 -0.38 -1.27 16 7 C -0.13 -2.50 5.48 -104.45 -0.57 -3.08 16 8 C 0.19 3.76 5.50 -5.19 -0.03 3.74 16 9 N -0.57 -12.82 2.04 -167.02 -0.34 -13.16 16 10 C -0.28 -7.55 9.18 -15.06 -0.14 -7.69 16 11 H 0.07 2.05 8.06 -52.48 -0.42 1.63 16 12 C 0.06 1.57 3.76 -17.43 -0.07 1.50 16 13 N -0.90 -26.26 13.97 55.49 0.78 -25.49 16 14 Si 0.89 21.62 24.80 -169.99 -4.21 17.40 16 15 H -0.27 -6.29 5.77 56.52 0.33 -5.96 16 16 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.11 2.26 3.63 -67.93 -0.25 2.01 16 19 C -0.20 -4.15 6.65 -26.69 -0.18 -4.33 16 20 C -0.23 -4.30 8.90 -26.70 -0.24 -4.54 16 21 C 0.15 2.74 6.68 -39.24 -0.26 2.48 16 22 O -0.50 -8.38 12.14 -19.42 -0.24 -8.62 16 23 C -0.19 -3.09 9.93 -39.29 -0.39 -3.48 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 28 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.12 1.59 6.29 -52.48 -0.33 1.26 16 30 H 0.13 2.13 8.03 -52.49 -0.42 1.71 16 31 H 0.07 1.33 7.90 -51.93 -0.41 0.92 16 32 H 0.05 1.01 7.78 -51.93 -0.40 0.60 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.12 3.00 5.04 -51.93 -0.26 2.74 16 36 H 0.08 1.47 7.84 -51.92 -0.41 1.07 16 37 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.39 5.95 6.30 45.56 0.29 6.23 16 40 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -29.82 321.61 -7.23 -37.05 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.33 Total: 9.49 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.53 Total: -16.70 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.43 Total: -38.65 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.43 Total: -13.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.21 Total: 17.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.82 -7.23 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769095197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.968 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds