Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46671 * 2 1 4 4 C 1.35986 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.99733 * 359.72821 * 4 3 2 6 6 C 1.38110 * 119.99943 * 179.71559 * 5 4 3 7 7 C 1.38724 * 119.99975 * 0.55632 * 6 5 4 8 8 O 1.35979 * 120.00112 * 179.70018 * 7 6 5 9 9 C 1.38675 * 119.99601 * 359.71868 * 7 6 5 10 10 C 1.50706 * 119.99909 * 179.97438 * 9 7 6 11 11 N 1.46497 * 109.47141 * 285.02613 * 10 9 7 12 12 C 1.36937 * 119.99801 * 89.99604 * 11 10 9 13 13 H 1.08002 * 119.99855 * 219.98925 * 12 11 10 14 14 C 1.38817 * 120.00223 * 39.99879 * 12 11 10 15 15 N 1.31619 * 119.99978 * 17.93477 * 14 12 11 16 16 Si 1.86797 * 120.00074 * 197.93895 * 14 12 11 17 17 H 1.48506 * 109.47201 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47382 * 119.99378 * 16 14 12 19 19 H 1.48493 * 109.47214 * 239.99887 * 16 14 12 20 20 C 1.46496 * 120.00058 * 269.99491 * 11 10 9 21 21 C 1.52997 * 117.50073 * 193.92289 * 20 11 10 22 22 C 1.53002 * 60.00121 * 252.51546 * 21 20 11 23 23 C 1.38156 * 120.00263 * 0.02562 * 9 7 6 24 24 H 1.09001 * 109.47096 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47291 * 299.99680 * 1 2 3 26 26 H 1.08993 * 109.47165 * 59.99995 * 1 2 3 27 27 H 1.08990 * 109.47036 * 240.00080 * 2 1 3 28 28 H 1.09001 * 109.47079 * 119.99689 * 2 1 3 29 29 H 1.08001 * 120.00185 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00195 * 180.25731 * 6 5 4 31 31 H 0.96700 * 113.99759 * 270.01949 * 8 7 6 32 32 H 1.09004 * 109.46444 * 45.02291 * 10 9 7 33 33 H 1.08997 * 109.47244 * 165.02504 * 10 9 7 34 34 H 0.97000 * 119.99978 * 174.96727 * 15 14 12 35 35 H 1.09004 * 115.54992 * 339.63805 * 20 11 10 36 36 H 1.08997 * 117.50093 * 0.02562 * 21 20 11 37 37 H 1.09004 * 117.50047 * 145.02104 * 21 20 11 38 38 H 1.09003 * 117.49207 * 252.50832 * 22 21 20 39 39 H 1.08994 * 117.50269 * 107.49180 * 22 21 20 40 40 H 1.08006 * 119.99761 * 180.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1994 0.4254 0.0068 6 6 5.5686 0.6064 0.0014 7 6 6.0988 1.8883 0.0014 8 8 7.4469 2.0665 0.0023 9 6 5.2540 2.9880 0.0010 10 6 5.8299 4.3807 0.0016 11 7 6.3465 4.6949 1.3360 12 6 7.6466 4.4040 1.6528 13 1 7.8895 4.0111 2.6291 14 6 8.6523 4.6143 0.7194 15 7 8.4375 5.4015 -0.3133 16 14 10.3103 3.7798 0.9289 17 1 10.2962 2.9532 2.1625 18 1 10.5798 2.9122 -0.2458 19 1 11.3733 4.8110 1.0368 20 6 5.4723 5.3203 2.3313 21 6 6.1325 5.9188 3.5750 22 6 5.3293 4.6212 3.6847 23 6 3.8844 2.8070 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7867 -0.5726 0.0108 30 1 6.2265 -0.2500 0.0020 31 1 7.8362 2.1180 0.8859 32 1 6.6406 4.4388 -0.7248 33 1 5.0516 5.0959 -0.2644 34 1 9.1614 5.6067 -0.9255 35 1 4.5947 5.8294 1.9326 36 1 7.2174 5.8476 3.6525 37 1 5.6896 6.8220 3.9947 38 1 4.3579 4.6708 4.1767 39 1 5.8857 3.6960 3.8345 40 1 3.2264 3.6635 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769104784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -7.077181 kcal Electronic energy + Delta-G solvation = -22150.436913 eV Core-core repulsion = 18932.511682 eV Total energy + Delta-G solvation = -3217.925231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82810 -38.14296 -36.73619 -35.15202 -33.54933 -31.71405 -31.56991 -29.67009 -27.97950 -25.59837 -24.05466 -23.00685 -21.93299 -21.33303 -20.44384 -19.77090 -17.59075 -17.37864 -16.19593 -15.96311 -15.87613 -15.21966 -14.69518 -14.26399 -14.12169 -13.69357 -13.46371 -13.09394 -12.87106 -12.75296 -12.66172 -12.05483 -11.84266 -11.73488 -11.35834 -11.09069 -10.90401 -10.86386 -10.67651 -10.57904 -10.32170 -10.23410 -9.98996 -9.69566 -9.40167 -9.29393 -8.47341 -8.24515 -7.40117 -6.48859 -5.87635 -3.47644 1.87131 1.95261 3.30935 3.37529 3.43447 3.43790 4.18944 4.40242 4.87493 4.93590 4.99452 5.14754 5.20206 5.27969 5.31573 5.35277 5.46347 5.48870 5.70469 5.81589 5.90832 5.93293 6.02600 6.11323 6.23604 6.33586 6.48113 6.50942 6.62791 6.68297 6.74427 6.79534 6.99724 7.19378 7.24484 7.36413 7.62046 7.74976 7.79374 8.47490 8.69375 9.10820 9.72410 10.32008 11.13741 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.005881 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.275899 B = 4760.213842 C = 5575.078760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.106 3.894 5 C -0.210 4.210 6 C -0.124 4.124 7 C 0.101 3.899 8 O -0.485 6.485 9 C -0.062 4.062 10 C 0.182 3.818 11 N -0.541 5.541 12 C -0.279 4.279 13 H 0.061 0.939 14 C 0.041 3.959 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.289 1.289 20 C 0.129 3.871 21 C -0.194 4.194 22 C -0.227 4.227 23 C -0.138 4.138 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.388 0.612 32 H 0.115 0.885 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -8.524 1.105 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.236 6.236 4 C 0.062 3.938 5 C -0.229 4.229 6 C -0.143 4.143 7 C 0.056 3.944 8 O -0.297 6.297 9 C -0.066 4.066 10 C 0.056 3.944 11 N -0.256 5.256 12 C -0.408 4.408 13 H 0.079 0.921 14 C -0.162 4.162 15 N -0.515 5.515 16 Si 0.718 3.282 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.216 1.216 20 C 0.019 3.981 21 C -0.233 4.233 22 C -0.268 4.268 23 C -0.157 4.157 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.247 0.753 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.457 -8.352 0.280 13.386 hybrid contribution 1.039 -0.747 0.768 1.493 sum -9.418 -9.099 1.047 13.137 Atomic orbital electron populations 1.21761 0.93240 1.02416 1.03385 1.22652 0.95388 0.82861 1.01034 1.86046 1.19750 1.28310 1.89470 1.18906 0.81499 0.94266 0.99150 1.20820 0.93742 0.97277 1.11079 1.21154 0.94469 0.96957 1.01671 1.18220 0.84475 0.90734 1.01003 1.84779 1.16082 1.94752 1.34108 1.21458 0.91573 0.99719 0.93824 1.20017 0.98138 0.86240 0.89965 1.43247 1.07430 1.65998 1.08923 1.18883 0.82441 1.39355 1.00150 0.92113 1.25221 0.97330 0.96143 0.97527 1.69809 1.31780 1.34207 1.15740 0.86492 0.84105 0.79581 0.78056 1.19981 1.20469 1.21614 1.21133 0.95216 0.97162 0.84544 1.23049 1.00222 0.95062 1.04993 1.23323 1.00089 0.96577 1.06762 1.20225 0.94511 0.94142 1.06859 0.90771 0.91640 0.91656 0.92470 0.92459 0.86404 0.86278 0.75320 0.86738 0.94556 0.93100 0.89557 0.88316 0.90934 0.91084 0.89968 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.64 5.46 37.16 0.20 0.84 16 3 O -0.32 -5.01 10.14 -19.70 -0.20 -5.20 16 4 C 0.11 1.84 6.69 -39.24 -0.26 1.58 16 5 C -0.21 -3.42 9.03 -39.45 -0.36 -3.78 16 6 C -0.12 -2.20 9.98 -39.45 -0.39 -2.60 16 7 C 0.10 2.10 6.66 -39.24 -0.26 1.84 16 8 O -0.48 -10.77 10.83 -19.67 -0.21 -10.99 16 9 C -0.06 -1.31 5.47 -104.49 -0.57 -1.88 16 10 C 0.18 4.21 5.15 -5.19 -0.03 4.18 16 11 N -0.54 -12.80 2.75 -167.02 -0.46 -13.26 16 12 C -0.28 -6.99 5.84 -15.06 -0.09 -7.07 16 13 H 0.06 1.55 7.30 -52.49 -0.38 1.16 16 14 C 0.04 1.05 3.95 -17.43 -0.07 0.98 16 15 N -0.88 -23.97 11.42 55.49 0.63 -23.33 16 16 Si 0.89 20.36 28.12 -169.99 -4.78 15.58 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.13 2.74 6.61 -67.93 -0.45 2.29 16 21 C -0.19 -3.87 9.82 -26.73 -0.26 -4.14 16 22 C -0.23 -4.39 10.10 -26.73 -0.27 -4.66 16 23 C -0.14 -2.61 9.60 -39.45 -0.38 -2.99 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 28 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.12 1.57 6.29 -52.49 -0.33 1.24 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.39 8.36 6.10 45.56 0.28 8.64 16 32 H 0.12 3.02 5.42 -51.93 -0.28 2.74 16 33 H 0.04 0.80 7.85 -51.93 -0.41 0.39 16 34 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 36 H 0.10 2.15 6.99 -51.93 -0.36 1.79 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.70 8.00 -51.93 -0.42 1.28 16 40 H 0.12 2.20 8.00 -52.48 -0.42 1.78 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -27.90 325.68 -8.13 -36.03 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.21 Total: 12.61 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.80 Total: -16.34 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.17 Total: -36.59 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.41 Total: -16.19 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.78 Total: 15.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.90 -8.13 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769104784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.949 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds