Wall clock time and date at job start Mon Mar 30 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46671 * 2 1 4 4 C 1.35986 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.99733 * 359.72821 * 4 3 2 6 6 C 1.38110 * 119.99943 * 179.71559 * 5 4 3 7 7 C 1.38724 * 119.99975 * 0.55632 * 6 5 4 8 8 O 1.35979 * 120.00112 * 179.70018 * 7 6 5 9 9 C 1.38675 * 119.99601 * 359.71868 * 7 6 5 10 10 C 1.50706 * 119.99909 * 179.97438 * 9 7 6 11 11 N 1.46497 * 109.47141 * 285.02613 * 10 9 7 12 12 C 1.36937 * 119.99801 * 89.99604 * 11 10 9 13 13 H 1.08002 * 119.99855 * 219.98925 * 12 11 10 14 14 C 1.38817 * 120.00223 * 39.99879 * 12 11 10 15 15 N 1.31619 * 119.99978 * 17.93477 * 14 12 11 16 16 Si 1.86797 * 120.00074 * 197.93895 * 14 12 11 17 17 H 1.48506 * 109.47201 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47382 * 119.99378 * 16 14 12 19 19 H 1.48493 * 109.47214 * 239.99887 * 16 14 12 20 20 C 1.46496 * 120.00058 * 269.99491 * 11 10 9 21 21 C 1.52997 * 117.50073 * 193.92289 * 20 11 10 22 22 C 1.53002 * 60.00121 * 252.51546 * 21 20 11 23 23 C 1.38156 * 120.00263 * 0.02562 * 9 7 6 24 24 H 1.09001 * 109.47096 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47291 * 299.99680 * 1 2 3 26 26 H 1.08993 * 109.47165 * 59.99995 * 1 2 3 27 27 H 1.08990 * 109.47036 * 240.00080 * 2 1 3 28 28 H 1.09001 * 109.47079 * 119.99689 * 2 1 3 29 29 H 1.08001 * 120.00185 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.00195 * 180.25731 * 6 5 4 31 31 H 0.96700 * 113.99759 * 270.01949 * 8 7 6 32 32 H 1.09004 * 109.46444 * 45.02291 * 10 9 7 33 33 H 1.08997 * 109.47244 * 165.02504 * 10 9 7 34 34 H 0.97000 * 119.99978 * 174.96727 * 15 14 12 35 35 H 1.09004 * 115.54992 * 339.63805 * 20 11 10 36 36 H 1.08997 * 117.50093 * 0.02562 * 21 20 11 37 37 H 1.09004 * 117.50047 * 145.02104 * 21 20 11 38 38 H 1.09003 * 117.49207 * 252.50832 * 22 21 20 39 39 H 1.08994 * 117.50269 * 107.49180 * 22 21 20 40 40 H 1.08006 * 119.99761 * 180.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.1994 0.4254 0.0068 6 6 5.5686 0.6064 0.0014 7 6 6.0988 1.8883 0.0014 8 8 7.4469 2.0665 0.0023 9 6 5.2540 2.9880 0.0010 10 6 5.8299 4.3807 0.0016 11 7 6.3465 4.6949 1.3360 12 6 7.6466 4.4040 1.6528 13 1 7.8895 4.0111 2.6291 14 6 8.6523 4.6143 0.7194 15 7 8.4375 5.4015 -0.3133 16 14 10.3103 3.7798 0.9289 17 1 10.2962 2.9532 2.1625 18 1 10.5798 2.9122 -0.2458 19 1 11.3733 4.8110 1.0368 20 6 5.4723 5.3203 2.3313 21 6 6.1325 5.9188 3.5750 22 6 5.3293 4.6212 3.6847 23 6 3.8844 2.8070 0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7867 -0.5726 0.0108 30 1 6.2265 -0.2500 0.0020 31 1 7.8362 2.1180 0.8859 32 1 6.6406 4.4388 -0.7248 33 1 5.0516 5.0959 -0.2644 34 1 9.1614 5.6067 -0.9255 35 1 4.5947 5.8294 1.9326 36 1 7.2174 5.8476 3.6525 37 1 5.6896 6.8220 3.9947 38 1 4.3579 4.6708 4.1767 39 1 5.8857 3.6960 3.8345 40 1 3.2264 3.6635 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769104784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:23 Heat of formation + Delta-G solvation = -23.156984 kcal Electronic energy + Delta-G solvation = -22151.134186 eV Core-core repulsion = 18932.511682 eV Total energy + Delta-G solvation = -3218.622504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18552 -39.56568 -38.38885 -36.65012 -35.30490 -33.30405 -32.62475 -31.30531 -29.40409 -27.34905 -25.62607 -24.16776 -23.38095 -22.92225 -21.86836 -21.47600 -19.06107 -18.83037 -17.97186 -17.42953 -16.97165 -16.79775 -16.37823 -15.91717 -15.69356 -15.28601 -14.82158 -14.50568 -14.19775 -14.10490 -13.67593 -13.52144 -13.28615 -13.08215 -12.84275 -12.71947 -12.57040 -12.37917 -12.17160 -12.08088 -12.05212 -11.80542 -11.44407 -11.42930 -10.97435 -10.91717 -10.38869 -9.72564 -8.82520 -8.37458 -7.80391 -5.44065 0.43803 0.49469 1.45633 1.51055 1.57838 2.32279 2.48760 2.76066 3.25138 3.48710 3.61434 3.73655 3.91742 4.04083 4.11016 4.23571 4.30849 4.33189 4.42729 4.48596 4.54885 4.60909 4.73776 4.84276 4.96210 4.97720 4.98675 5.05735 5.15841 5.22229 5.28605 5.36778 5.40051 5.56948 5.65463 5.74898 5.80682 5.87843 6.52078 6.53285 7.07228 7.18907 7.86247 8.42049 9.17527 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.005881 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.275899 B = 4760.213842 C = 5575.078760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.113 3.887 5 C -0.198 4.198 6 C -0.117 4.117 7 C 0.067 3.933 8 O -0.499 6.499 9 C -0.078 4.078 10 C 0.189 3.811 11 N -0.554 5.554 12 C -0.266 4.266 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.910 5.910 16 Si 0.940 3.060 17 H -0.259 1.259 18 H -0.289 1.289 19 H -0.296 1.296 20 C 0.102 3.898 21 C -0.190 4.190 22 C -0.205 4.205 23 C -0.148 4.148 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.384 0.616 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 -10.649 2.145 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.247 6.247 4 C 0.068 3.932 5 C -0.217 4.217 6 C -0.135 4.135 7 C 0.022 3.978 8 O -0.311 6.311 9 C -0.082 4.082 10 C 0.063 3.937 11 N -0.271 5.271 12 C -0.396 4.396 13 H 0.072 0.928 14 C -0.197 4.197 15 N -0.553 5.553 16 Si 0.768 3.232 17 H -0.183 1.183 18 H -0.215 1.215 19 H -0.224 1.224 20 C -0.006 4.006 21 C -0.228 4.228 22 C -0.245 4.245 23 C -0.167 4.167 24 H 0.120 0.880 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.242 0.758 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.471 -10.496 1.343 16.356 hybrid contribution 1.454 -0.166 0.461 1.535 sum -11.017 -10.662 1.804 15.437 Atomic orbital electron populations 1.21799 0.91357 1.04176 1.03112 1.23071 0.96964 0.80920 1.02199 1.86058 1.18404 1.31281 1.88972 1.18920 0.82715 0.93826 0.97716 1.21185 0.92850 0.98751 1.08893 1.21371 0.95593 0.96290 1.00289 1.18523 0.83800 0.92080 1.03399 1.84775 1.17313 1.95033 1.33974 1.21193 0.92629 0.98476 0.95855 1.19723 0.96855 0.87959 0.89122 1.43358 1.07450 1.66850 1.09406 1.18903 0.83213 1.37917 0.99561 0.92761 1.25690 0.99738 0.96748 0.97477 1.69945 1.32179 1.36288 1.16840 0.85680 0.80949 0.78525 0.78046 1.18318 1.21522 1.22386 1.21382 0.95736 0.98660 0.84870 1.23039 0.99073 0.96629 1.04083 1.23248 1.00945 0.95503 1.04811 1.20232 0.93705 0.95491 1.07287 0.87974 0.91974 0.91918 0.91174 0.91253 0.82643 0.84019 0.75840 0.90289 0.94649 0.93842 0.88390 0.90645 0.88237 0.88244 0.91478 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.04 0.81 5.46 71.98 0.39 1.21 16 3 O -0.33 -9.44 10.14 -93.40 -0.95 -10.39 16 4 C 0.11 3.68 6.69 22.49 0.15 3.83 16 5 C -0.20 -5.81 9.03 22.36 0.20 -5.60 16 6 C -0.12 -3.93 9.98 22.36 0.22 -3.70 16 7 C 0.07 2.79 6.66 22.49 0.15 2.94 16 8 O -0.50 -22.68 10.83 -93.31 -1.01 -23.69 16 9 C -0.08 -3.33 5.47 -19.78 -0.11 -3.44 16 10 C 0.19 9.07 5.15 85.64 0.44 9.51 16 11 N -0.55 -26.78 2.75 -682.34 -1.88 -28.66 16 12 C -0.27 -13.63 5.84 84.03 0.49 -13.14 16 13 H 0.05 2.81 7.30 -2.91 -0.02 2.79 16 14 C 0.00 0.16 3.95 84.86 0.34 0.49 16 15 N -0.91 -51.91 11.42 21.65 0.25 -51.67 16 16 Si 0.94 43.00 28.12 68.60 1.93 44.93 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 20 C 0.10 4.30 6.61 44.99 0.30 4.60 16 21 C -0.19 -7.35 9.82 30.59 0.30 -7.05 16 22 C -0.20 -7.60 10.10 30.60 0.31 -7.29 16 23 C -0.15 -5.51 9.60 22.35 0.21 -5.29 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 28 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 29 H 0.16 3.36 6.29 -2.91 -0.02 3.34 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.38 16.99 6.10 -74.06 -0.45 16.54 16 32 H 0.08 4.40 5.42 -2.39 -0.01 4.38 16 33 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 34 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 35 H 0.10 3.85 8.10 -2.39 -0.02 3.83 16 36 H 0.07 3.29 6.99 -2.39 -0.02 3.27 16 37 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 38 H 0.10 3.13 8.14 -2.39 -0.02 3.12 16 39 H 0.07 2.70 8.00 -2.39 -0.02 2.69 16 40 H 0.13 4.49 8.00 -2.91 -0.02 4.46 16 Total: -1.00 -61.50 325.68 3.07 -58.43 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.59 Total: 35.33 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.14 Total: -24.28 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.63 Total: -80.32 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.96 Total: -34.07 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.93 Total: 44.93 kcal Total: -61.50 3.07 -58.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769104784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.269 kcal (2) G-P(sol) polarization free energy of solvation -61.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds