Wall clock time and date at job start Mon Mar 30 2020 01:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99568 * 2 1 4 4 C 1.53008 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47036 * 64.99783 * 4 3 2 6 6 C 1.46497 * 120.00047 * 270.00474 * 5 4 3 7 7 C 1.34777 * 120.00051 * 89.99955 * 5 4 3 8 8 O 1.21283 * 119.99353 * 0.02562 * 7 5 4 9 9 C 1.50692 * 119.99931 * 180.02562 * 7 5 4 10 10 C 1.50703 * 109.47000 * 180.02562 * 9 7 5 11 11 C 1.37645 * 120.13007 * 265.30719 * 10 9 7 12 12 C 1.38606 * 120.24649 * 180.32491 * 11 10 9 13 13 C 1.38653 * 120.50471 * 359.65965 * 12 11 10 14 14 C 1.37600 * 120.24898 * 0.02562 * 13 12 11 15 15 C 1.40696 * 120.12867 * 84.99790 * 10 9 7 16 16 C 1.41400 * 120.24530 * 359.97438 * 15 10 9 17 17 H 1.08003 * 119.99719 * 25.87056 * 16 15 10 18 18 C 1.39942 * 120.00205 * 205.88123 * 16 15 10 19 19 N 1.30821 * 119.99968 * 16.29869 * 18 16 15 20 20 Si 1.86803 * 120.00009 * 196.30797 * 18 16 15 21 21 H 1.48496 * 109.47194 * 265.18190 * 20 18 16 22 22 H 1.48505 * 109.46937 * 25.18007 * 20 18 16 23 23 H 1.48498 * 109.47234 * 145.18150 * 20 18 16 24 24 H 1.09000 * 109.47581 * 300.00122 * 1 2 3 25 25 H 1.08998 * 109.47380 * 60.00743 * 1 2 3 26 26 H 1.09005 * 109.46641 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47610 * 59.99946 * 3 2 1 28 28 H 1.09000 * 109.47713 * 299.99666 * 3 2 1 29 29 H 1.08997 * 109.46762 * 305.00151 * 4 3 2 30 30 H 1.09002 * 109.47456 * 185.00108 * 4 3 2 31 31 H 1.09003 * 109.47406 * 269.99981 * 6 5 4 32 32 H 1.09001 * 109.47207 * 29.99569 * 6 5 4 33 33 H 1.09001 * 109.47275 * 149.99291 * 6 5 4 34 34 H 1.09000 * 109.47297 * 60.00731 * 9 7 5 35 35 H 1.08997 * 109.47185 * 300.00030 * 9 7 5 36 36 H 1.07994 * 119.87429 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.74758 * 179.69746 * 12 11 10 38 38 H 1.07998 * 119.87893 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.12664 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00001 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.1063 -0.8923 -1.3403 7 6 4.2633 1.3331 -2.3200 8 8 4.1562 2.5389 -2.2458 9 6 4.7166 0.6945 -3.6075 10 6 4.9704 1.7653 -4.6371 11 6 3.9838 2.1104 -5.5327 12 6 4.2169 3.0902 -6.4850 13 6 5.4412 3.7384 -6.5429 14 6 6.4399 3.4141 -5.6535 15 6 6.2146 2.4207 -4.6825 16 6 7.2332 2.0796 -3.7631 17 1 7.2537 1.0945 -3.3208 18 6 8.2147 3.0184 -3.4260 19 7 8.0278 4.2851 -3.6942 20 14 9.7920 2.4628 -2.5935 21 1 9.6508 2.6029 -1.1219 22 1 10.0563 1.0413 -2.9323 23 1 10.9226 3.3025 -3.0644 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6884 1.8465 0.8899 28 1 1.6885 1.8465 -0.8900 29 1 3.8507 0.5687 0.8427 30 1 3.9783 2.1768 0.0902 31 1 5.1156 -1.1857 -1.0516 32 1 3.3859 -1.3630 -0.6713 33 1 3.9138 -1.2121 -2.3644 34 1 3.9426 0.0179 -3.9698 35 1 5.6353 0.1350 -3.4318 36 1 3.0261 1.6126 -5.4963 37 1 3.4387 3.3512 -7.1869 38 1 5.6118 4.5005 -7.2888 39 1 7.3926 3.9205 -5.7001 40 1 8.7083 4.9359 -3.4609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776837094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:40 Heat of formation + Delta-G solvation = -61.814911 kcal Electronic energy + Delta-G solvation = -21854.497691 eV Core-core repulsion = 18634.198854 eV Total energy + Delta-G solvation = -3220.298837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.41350 -37.86635 -37.16904 -34.84483 -33.53467 -31.87217 -30.13766 -29.37103 -26.88267 -26.65688 -25.62216 -24.88333 -22.71645 -20.86913 -19.92867 -18.42619 -17.10671 -16.73151 -16.30060 -15.86077 -15.57260 -15.36162 -14.92920 -14.50171 -14.29724 -13.54273 -13.41193 -13.00311 -12.55673 -12.41709 -12.37011 -12.04340 -11.97745 -11.88431 -11.62869 -11.43539 -11.09432 -11.06867 -11.02363 -10.82897 -10.62421 -10.35460 -9.73635 -9.41753 -9.27727 -9.07816 -8.95589 -8.18379 -7.25131 -7.23598 -6.64286 -4.24985 2.84957 3.02472 3.10657 3.14346 3.31896 3.46315 3.57361 3.81240 3.99235 4.74408 5.08810 5.12793 5.22810 5.32754 5.38539 5.45635 5.51964 5.55069 5.75355 5.80611 5.90598 5.95395 6.01508 6.10646 6.21861 6.35146 6.45122 6.58335 6.82426 6.96345 7.11223 7.18141 7.35229 7.48711 7.70474 7.92961 8.00952 8.11332 8.19094 8.39405 8.71599 8.98014 9.01200 9.08135 10.30711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.005922 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.727955 B = 4727.375746 C = 5836.606896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.626 5.626 6 C 0.087 3.913 7 C 0.517 3.483 8 O -0.515 6.515 9 C -0.066 4.066 10 C -0.181 4.181 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.106 4.106 14 C -0.162 4.162 15 C 0.131 3.869 16 C -0.459 4.459 17 H 0.074 0.926 18 C 0.079 3.921 19 N -0.791 5.791 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.261 1.261 23 H -0.276 1.276 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -8.680 6.881 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.033 4.033 4 C -0.002 4.002 5 N -0.363 5.363 6 C -0.057 4.057 7 C 0.306 3.694 8 O -0.388 6.388 9 C -0.105 4.105 10 C -0.183 4.183 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.124 4.124 14 C -0.182 4.182 15 C 0.128 3.872 16 C -0.489 4.489 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.416 5.416 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.185 1.185 23 H -0.201 1.201 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.638 -7.938 6.942 13.021 hybrid contribution 0.398 0.132 0.541 0.684 sum -7.240 -7.806 7.483 13.013 Atomic orbital electron populations 1.22693 0.81597 1.02331 0.99805 1.87854 1.19256 1.28245 1.95415 1.23079 0.95032 0.84570 1.00578 1.21362 0.91379 1.00500 0.86992 1.47897 1.69161 1.07126 1.12090 1.21700 1.00976 0.80198 1.02813 1.21133 0.76010 0.87356 0.84853 1.90687 1.50522 1.14403 1.83160 1.20264 1.01097 0.97705 0.91479 1.19038 0.95142 1.04275 0.99876 1.20281 0.96197 0.97490 0.95971 1.20281 0.97911 1.03974 1.03952 1.20666 0.94438 0.98674 0.98658 1.21271 0.98924 1.02046 0.95912 1.17323 0.90145 0.89593 0.90120 1.19446 1.07893 0.99175 1.22392 0.90773 1.25834 0.99108 0.94296 0.94668 1.69844 1.33128 1.01616 1.36998 0.86421 0.81294 0.80023 0.79692 1.19765 1.18468 1.20086 0.94414 0.94226 0.89921 0.92877 0.92672 0.90416 0.88464 0.93353 0.90907 0.91324 0.90892 0.89109 0.89887 0.89762 0.89659 0.86610 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.98 9.53 -35.23 -0.34 -5.32 16 3 C 0.05 0.60 6.28 37.16 0.23 0.84 16 4 C 0.12 1.77 5.81 -4.04 -0.02 1.75 16 5 N -0.63 -10.41 2.84 -181.57 -0.52 -10.93 16 6 C 0.09 1.11 10.06 59.85 0.60 1.71 16 7 C 0.52 10.92 7.67 -10.99 -0.08 10.83 16 8 O -0.51 -13.23 15.61 5.56 0.09 -13.14 16 9 C -0.07 -1.35 3.90 -29.04 -0.11 -1.46 16 10 C -0.18 -4.49 4.43 -103.91 -0.46 -4.95 16 11 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 12 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 13 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 14 C -0.16 -4.41 8.68 -38.87 -0.34 -4.74 16 15 C 0.13 3.55 5.56 -106.82 -0.59 2.96 16 16 C -0.46 -12.28 8.46 -37.74 -0.32 -12.59 16 17 H 0.07 1.87 6.36 -52.48 -0.33 1.54 16 18 C 0.08 2.03 5.16 -17.34 -0.09 1.95 16 19 N -0.79 -21.41 10.98 55.55 0.61 -20.80 16 20 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.10 1.58 7.42 -51.93 -0.39 1.20 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.84 7.11 -51.93 -0.37 0.47 16 33 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 34 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 35 H 0.09 1.79 6.45 -51.93 -0.33 1.45 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.12 3.22 6.23 -52.49 -0.33 2.89 16 40 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -32.27 333.35 -7.23 -39.50 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.82 Total: 5.32 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.25 Total: -13.78 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.09 Total: -31.73 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.25 Total: -18.46 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -7.23 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776837094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.310 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds