Wall clock time and date at job start Mon Mar 30 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00272 * 2 1 4 4 C 1.46904 * 111.00216 * 123.95403 * 2 1 3 5 5 C 1.53005 * 109.47127 * 169.99790 * 4 2 1 6 6 C 1.52995 * 109.46718 * 179.97438 * 5 4 2 7 7 O 1.45203 * 109.47237 * 180.02562 * 6 5 4 8 8 C 1.34771 * 117.00457 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47501 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.40073 * 119.90212 * 180.02562 * 10 8 7 12 12 C 1.36300 * 120.10206 * 180.25905 * 11 10 8 13 13 C 1.40893 * 119.89711 * 359.51403 * 12 11 10 14 14 C 1.41091 * 120.10255 * 180.23496 * 13 12 11 15 15 H 1.08001 * 120.00415 * 204.81651 * 14 13 12 16 16 C 1.40248 * 119.99756 * 24.80634 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73115 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73172 * 16 14 13 19 19 H 1.48501 * 109.47351 * 90.00385 * 18 16 14 20 20 H 1.48499 * 109.47050 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99778 * 18 16 14 22 22 C 1.40906 * 119.80286 * 0.50317 * 13 12 11 23 23 C 1.36297 * 119.89800 * 359.73440 * 22 13 12 24 24 H 1.09002 * 109.47208 * 296.04366 * 1 2 3 25 25 H 1.08999 * 109.47038 * 56.05130 * 1 2 3 26 26 H 1.09003 * 109.46837 * 176.04617 * 1 2 3 27 27 H 1.08992 * 109.47274 * 183.95690 * 3 2 1 28 28 H 1.09007 * 109.46803 * 303.95300 * 3 2 1 29 29 H 1.08997 * 109.46802 * 63.95235 * 3 2 1 30 30 H 1.09003 * 109.46855 * 49.99905 * 4 2 1 31 31 H 1.09002 * 109.46990 * 290.00150 * 4 2 1 32 32 H 1.08996 * 109.46538 * 60.00310 * 5 4 2 33 33 H 1.08989 * 109.47292 * 299.99859 * 5 4 2 34 34 H 1.09003 * 109.47363 * 60.00579 * 6 5 4 35 35 H 1.09003 * 109.47813 * 300.00051 * 6 5 4 36 36 H 1.08002 * 119.94534 * 359.97438 * 11 10 8 37 37 H 1.08004 * 120.05042 * 179.74750 * 12 11 10 38 38 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.05172 * 179.70589 * 22 13 12 40 40 H 1.07997 * 119.94971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9703 6 6 4.0528 -1.7526 2.1554 7 8 5.4850 -1.9319 1.9970 8 6 6.1262 -2.6191 2.9629 9 8 5.5056 -3.0562 3.9117 10 6 7.5814 -2.8407 2.8682 11 6 8.2457 -3.5557 3.8730 12 6 9.5911 -3.7584 3.7923 13 6 10.3122 -3.2562 2.6909 14 6 11.7042 -3.4677 2.6006 15 1 12.3172 -2.7901 2.0248 16 6 12.2920 -4.5579 3.2586 17 7 11.5510 -5.5575 3.6565 18 14 14.1343 -4.5806 3.5661 19 1 14.4249 -3.9501 4.8788 20 1 14.6176 -5.9848 3.5736 21 1 14.8251 -3.8252 2.4902 22 6 9.6399 -2.5372 1.6828 23 6 8.2950 -2.3351 1.7741 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5089 -1.7407 1.1756 31 1 1.7975 -0.2248 2.0628 32 1 3.9909 0.0193 0.9323 33 1 3.7024 -1.4966 0.0452 34 1 3.5665 -2.7273 2.1939 35 1 3.8550 -1.2110 3.0805 36 1 7.6916 -3.9431 4.7152 37 1 10.1031 -4.3063 4.5696 38 1 11.9575 -6.3117 4.1113 39 1 10.1894 -2.1464 0.8391 40 1 7.7788 -1.7845 1.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792069849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:03 Heat of formation + Delta-G solvation = -78.767446 kcal Electronic energy + Delta-G solvation = -20273.096775 eV Core-core repulsion = 17052.062821 eV Total energy + Delta-G solvation = -3221.033954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.57478 -37.98925 -37.40021 -35.67010 -33.96167 -32.49606 -30.24302 -29.57530 -27.86566 -26.93744 -25.81708 -23.04630 -21.97826 -21.01810 -20.98697 -19.78002 -17.58785 -16.91248 -16.34531 -16.26531 -15.45401 -15.39060 -15.28444 -14.88256 -14.05185 -13.97588 -13.46187 -13.25854 -12.71539 -12.68066 -12.59047 -12.22034 -12.06446 -12.03423 -11.90796 -11.65131 -11.43609 -11.30152 -11.21257 -10.98485 -10.91542 -10.68126 -10.11577 -10.04874 -9.58186 -9.44294 -9.39455 -8.64926 -7.74967 -7.64157 -7.09246 -4.67694 2.06646 2.87171 2.93120 2.95919 3.03156 3.25056 3.64669 3.70899 3.83284 4.47264 4.74348 4.86385 4.94089 5.10933 5.15288 5.25535 5.33691 5.37264 5.48095 5.52418 5.55429 5.57418 5.68659 5.92939 6.03783 6.15121 6.25679 6.26532 6.72664 6.74087 6.74595 6.81364 6.99352 7.05935 7.15443 7.41296 7.61779 7.79064 7.87277 8.00989 8.36125 8.56524 8.69187 8.77034 9.82143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048808 B = 0.002684 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.540637 B =10430.974044 C =10847.923073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.116 4.116 6 C 0.070 3.930 7 O -0.361 6.361 8 C 0.514 3.486 9 O -0.552 6.552 10 C -0.275 4.275 11 C -0.033 4.033 12 C -0.185 4.185 13 C 0.131 3.869 14 C -0.435 4.435 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.764 5.764 18 Si 0.917 3.083 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.240 4.240 23 C -0.027 4.027 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 7.588 -4.360 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.154 4.154 6 C -0.005 4.005 7 O -0.279 6.279 8 C 0.366 3.634 9 O -0.446 6.446 10 C -0.277 4.277 11 C -0.052 4.052 12 C -0.204 4.204 13 C 0.128 3.872 14 C -0.462 4.462 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.386 5.386 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.259 4.259 23 C -0.046 4.046 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.695 7.002 -4.433 14.333 hybrid contribution 0.287 0.206 0.986 1.047 sum -11.408 7.207 -3.447 13.928 Atomic orbital electron populations 1.22384 0.87189 1.02360 1.00450 1.61928 1.07853 1.14151 1.43181 1.22476 1.01537 0.88533 1.00379 1.22017 0.95064 0.98572 0.91378 1.21513 0.93962 1.01227 0.98688 1.22717 0.79264 1.00169 0.98345 1.86566 1.22228 1.69865 1.49242 1.21587 0.89031 0.73919 0.78831 1.90696 1.68845 1.51140 1.33932 1.18234 0.87387 1.18479 1.03598 1.20462 0.94495 0.94445 0.95762 1.20981 0.92759 1.06697 0.99957 1.17852 0.93109 0.87208 0.89065 1.19929 0.93022 1.08163 1.25066 0.89450 1.26171 1.01710 0.94321 0.92842 1.69740 1.38869 1.04786 1.25224 0.86158 0.80932 0.78657 0.80264 1.18826 1.19924 1.18191 1.20724 0.93744 1.10753 1.00727 1.20547 0.94203 0.94964 0.94882 0.95688 0.91309 0.91262 0.90686 0.91412 0.95610 0.90364 0.94475 0.90829 0.89894 0.91810 0.92080 0.88060 0.85933 0.89968 0.88195 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 60.06 0.57 0.76 16 2 N -0.55 -5.34 5.02 -251.25 -1.26 -6.61 16 3 C 0.02 0.16 9.32 60.06 0.56 0.72 16 4 C 0.06 0.58 4.96 -3.82 -0.02 0.56 16 5 C -0.12 -1.39 5.52 -26.73 -0.15 -1.53 16 6 C 0.07 1.06 5.48 37.16 0.20 1.26 16 7 O -0.36 -6.97 9.45 -40.68 -0.38 -7.36 16 8 C 0.51 11.59 7.89 34.51 0.27 11.86 16 9 O -0.55 -13.30 16.11 -19.28 -0.31 -13.62 16 10 C -0.27 -6.54 5.89 -104.75 -0.62 -7.16 16 11 C -0.03 -0.81 9.52 -39.59 -0.38 -1.18 16 12 C -0.18 -4.70 8.63 -39.28 -0.34 -5.04 16 13 C 0.13 3.33 5.57 -106.80 -0.60 2.73 16 14 C -0.43 -10.66 9.04 -37.75 -0.34 -11.00 16 15 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 16 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 17 N -0.76 -18.36 10.95 55.56 0.61 -17.75 16 18 Si 0.92 17.06 29.60 -169.99 -5.03 12.03 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 22 C -0.24 -5.66 9.73 -39.27 -0.38 -6.04 16 23 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 28 H 0.07 0.50 8.12 -51.92 -0.42 0.08 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 31 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 32 H 0.07 0.86 6.55 -51.93 -0.34 0.52 16 33 H 0.08 1.03 8.14 -51.94 -0.42 0.61 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.10 2.42 7.63 -52.49 -0.40 2.01 16 37 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 38 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.10 2.07 7.59 -52.49 -0.40 1.67 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -27.88 338.17 -8.95 -36.83 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.99 Total: 4.84 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.67 Total: -13.46 kcal Atomic # 7 Polarization: -23.70 SS G_CDS: -0.65 Total: -24.36 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.69 Total: -20.97 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.88 -8.95 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792069849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.938 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds