Wall clock time and date at job start Mon Mar 30 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00272 * 2 1 4 4 C 1.46904 * 111.00216 * 123.95403 * 2 1 3 5 5 C 1.53005 * 109.47127 * 169.99790 * 4 2 1 6 6 C 1.52995 * 109.46718 * 179.97438 * 5 4 2 7 7 O 1.45203 * 109.47237 * 180.02562 * 6 5 4 8 8 C 1.34771 * 117.00457 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.47501 * 120.00094 * 179.97438 * 8 7 6 11 11 C 1.40073 * 119.90212 * 180.02562 * 10 8 7 12 12 C 1.36300 * 120.10206 * 180.25905 * 11 10 8 13 13 C 1.40893 * 119.89711 * 359.51403 * 12 11 10 14 14 C 1.41091 * 120.10255 * 180.23496 * 13 12 11 15 15 H 1.08001 * 120.00415 * 204.81651 * 14 13 12 16 16 C 1.40248 * 119.99756 * 24.80634 * 14 13 12 17 17 N 1.30632 * 119.99956 * 17.73115 * 16 14 13 18 18 Si 1.86797 * 120.00167 * 197.73172 * 16 14 13 19 19 H 1.48501 * 109.47351 * 90.00385 * 18 16 14 20 20 H 1.48499 * 109.47050 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47161 * 329.99778 * 18 16 14 22 22 C 1.40906 * 119.80286 * 0.50317 * 13 12 11 23 23 C 1.36297 * 119.89800 * 359.73440 * 22 13 12 24 24 H 1.09002 * 109.47208 * 296.04366 * 1 2 3 25 25 H 1.08999 * 109.47038 * 56.05130 * 1 2 3 26 26 H 1.09003 * 109.46837 * 176.04617 * 1 2 3 27 27 H 1.08992 * 109.47274 * 183.95690 * 3 2 1 28 28 H 1.09007 * 109.46803 * 303.95300 * 3 2 1 29 29 H 1.08997 * 109.46802 * 63.95235 * 3 2 1 30 30 H 1.09003 * 109.46855 * 49.99905 * 4 2 1 31 31 H 1.09002 * 109.46990 * 290.00150 * 4 2 1 32 32 H 1.08996 * 109.46538 * 60.00310 * 5 4 2 33 33 H 1.08989 * 109.47292 * 299.99859 * 5 4 2 34 34 H 1.09003 * 109.47363 * 60.00579 * 6 5 4 35 35 H 1.09003 * 109.47813 * 300.00051 * 6 5 4 36 36 H 1.08002 * 119.94534 * 359.97438 * 11 10 8 37 37 H 1.08004 * 120.05042 * 179.74750 * 12 11 10 38 38 H 0.97000 * 120.00424 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.05172 * 179.70589 * 22 13 12 40 40 H 1.07997 * 119.94971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9703 6 6 4.0528 -1.7526 2.1554 7 8 5.4850 -1.9319 1.9970 8 6 6.1262 -2.6191 2.9629 9 8 5.5056 -3.0562 3.9117 10 6 7.5814 -2.8407 2.8682 11 6 8.2457 -3.5557 3.8730 12 6 9.5911 -3.7584 3.7923 13 6 10.3122 -3.2562 2.6909 14 6 11.7042 -3.4677 2.6006 15 1 12.3172 -2.7901 2.0248 16 6 12.2920 -4.5579 3.2586 17 7 11.5510 -5.5575 3.6565 18 14 14.1343 -4.5806 3.5661 19 1 14.4249 -3.9501 4.8788 20 1 14.6176 -5.9848 3.5736 21 1 14.8251 -3.8252 2.4902 22 6 9.6399 -2.5372 1.6828 23 6 8.2950 -2.3351 1.7741 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 3.0827 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5089 -1.7407 1.1756 31 1 1.7975 -0.2248 2.0628 32 1 3.9909 0.0193 0.9323 33 1 3.7024 -1.4966 0.0452 34 1 3.5665 -2.7273 2.1939 35 1 3.8550 -1.2110 3.0805 36 1 7.6916 -3.9431 4.7152 37 1 10.1031 -4.3063 4.5696 38 1 11.9575 -6.3117 4.1113 39 1 10.1894 -2.1464 0.8391 40 1 7.7788 -1.7845 1.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792069849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:03 Heat of formation + Delta-G solvation = -93.155213 kcal Electronic energy + Delta-G solvation = -20273.720676 eV Core-core repulsion = 17052.062821 eV Total energy + Delta-G solvation = -3221.657855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25327 -39.32442 -38.68408 -37.28224 -35.76650 -33.56640 -32.07114 -31.43382 -28.50849 -28.34079 -27.21052 -24.37572 -23.40328 -22.82524 -21.93017 -21.45080 -19.41848 -18.62370 -17.79657 -17.58033 -17.12997 -16.40194 -16.30538 -15.76347 -15.63207 -15.21503 -15.10646 -14.93038 -14.26889 -14.04260 -13.80008 -13.60006 -13.36275 -13.25956 -12.92246 -12.87177 -12.69602 -12.64153 -12.44225 -12.40357 -12.32463 -11.96404 -11.80863 -11.39728 -11.39405 -11.23363 -11.16459 -9.63927 -9.52963 -9.35319 -8.85153 -6.55399 0.23937 1.13991 1.36748 1.41611 1.54896 1.83561 1.89059 2.14714 2.68110 3.01063 3.62575 3.82512 3.97503 4.04409 4.20796 4.26582 4.34888 4.36534 4.41182 4.47692 4.52072 4.61930 4.71119 4.74469 4.93112 4.97430 4.99440 5.01617 5.07806 5.11326 5.18566 5.20781 5.48456 5.55024 5.78163 5.93049 5.98171 6.01345 6.06904 6.14767 6.49150 6.69945 6.82137 7.02849 8.09643 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048808 B = 0.002684 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.540637 B =10430.974044 C =10847.923073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.018 3.982 4 C 0.062 3.938 5 C -0.104 4.104 6 C 0.065 3.935 7 O -0.360 6.360 8 C 0.519 3.481 9 O -0.574 6.574 10 C -0.292 4.292 11 C -0.041 4.041 12 C -0.203 4.203 13 C 0.104 3.896 14 C -0.457 4.457 15 H 0.097 0.903 16 C 0.032 3.968 17 N -0.794 5.794 18 Si 0.993 3.007 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.250 1.250 22 C -0.250 4.250 23 C -0.021 4.021 24 H 0.029 0.971 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.299 0.701 39 H 0.118 0.882 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 8.393 -5.298 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.130 4.130 4 C -0.066 4.066 5 C -0.142 4.142 6 C -0.009 4.009 7 O -0.277 6.277 8 C 0.371 3.629 9 O -0.470 6.470 10 C -0.295 4.295 11 C -0.060 4.060 12 C -0.222 4.222 13 C 0.101 3.899 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.188 4.188 17 N -0.417 5.417 18 Si 0.812 3.188 19 H -0.185 1.185 20 H -0.190 1.190 21 H -0.174 1.174 22 C -0.269 4.269 23 C -0.039 4.039 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.615 7.821 -5.392 15.005 hybrid contribution 0.156 -0.038 1.243 1.253 sum -11.459 7.783 -4.149 14.460 Atomic orbital electron populations 1.22435 0.85914 1.02915 1.01145 1.61927 1.09109 1.14697 1.42857 1.22509 1.01246 0.88196 1.01088 1.21942 0.93582 0.99168 0.91903 1.21437 0.95230 1.00617 0.96870 1.23064 0.76825 1.00943 1.00108 1.86527 1.24584 1.68743 1.47837 1.21351 0.88708 0.73831 0.78972 1.90676 1.69262 1.52120 1.34894 1.18453 0.88557 1.18650 1.03823 1.20533 0.94414 0.94836 0.96237 1.20946 0.93179 1.07765 1.00307 1.18213 0.94049 0.88070 0.89600 1.20274 0.93052 1.08953 1.26021 0.88511 1.27108 1.06551 0.93305 0.91795 1.69779 1.41185 1.05497 1.25225 0.85020 0.74564 0.79014 0.80172 1.18492 1.19044 1.17368 1.20962 0.94307 1.10729 1.00918 1.20768 0.93959 0.94283 0.94889 0.95282 0.90240 0.90900 0.91250 0.90236 0.95315 0.89861 0.94090 0.90504 0.90280 0.91661 0.91764 0.88269 0.87078 0.88976 0.86369 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.57 127.69 1.22 1.54 16 2 N -0.56 -9.88 5.02 -948.83 -4.76 -14.64 16 3 C 0.02 0.27 9.32 127.69 1.19 1.46 16 4 C 0.06 1.15 4.96 86.30 0.43 1.58 16 5 C -0.10 -2.32 5.52 30.59 0.17 -2.15 16 6 C 0.06 1.89 5.48 71.98 0.39 2.29 16 7 O -0.36 -13.54 9.45 -56.82 -0.54 -14.08 16 8 C 0.52 23.32 7.89 70.26 0.55 23.87 16 9 O -0.57 -27.77 16.11 19.79 0.32 -27.45 16 10 C -0.29 -14.01 5.89 -19.95 -0.12 -14.12 16 11 C -0.04 -2.09 9.52 22.26 0.21 -1.88 16 12 C -0.20 -10.63 8.63 22.47 0.19 -10.44 16 13 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 14 C -0.46 -22.39 9.04 23.46 0.21 -22.18 16 15 H 0.10 4.41 7.91 -2.91 -0.02 4.39 16 16 C 0.03 1.48 5.14 85.36 0.44 1.92 16 17 N -0.79 -38.46 10.95 21.88 0.24 -38.22 16 18 Si 0.99 34.06 29.60 68.60 2.03 36.09 16 19 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 20 H -0.27 -8.71 7.11 99.48 0.71 -8.00 16 21 H -0.25 -8.22 7.11 99.48 0.71 -7.52 16 22 C -0.25 -11.69 9.73 22.47 0.22 -11.47 16 23 C -0.02 -0.92 9.55 22.26 0.21 -0.70 16 24 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 26 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.07 1.12 6.47 -2.39 -0.02 1.11 16 28 H 0.08 1.01 8.12 -2.38 -0.02 0.99 16 29 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 31 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.08 1.68 6.55 -2.39 -0.02 1.66 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 4.92 7.63 -2.91 -0.02 4.90 16 37 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 38 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 39 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.13 4.97 7.59 -2.91 -0.02 4.95 16 Total: -1.00 -59.29 338.17 3.52 -55.77 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 1.02 Total: 27.58 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 5.21 Total: -25.05 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -4.52 Total: -52.86 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.22 Total: -41.53 kcal Atomic # 14 Polarization: 34.06 SS G_CDS: 2.03 Total: 36.09 kcal Total: -59.29 3.52 -55.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792069849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.386 kcal (2) G-P(sol) polarization free energy of solvation -59.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds