Wall clock time and date at job start Mon Mar 30 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99948 * 2 1 4 4 C 1.38787 * 120.02769 * 0.26316 * 3 2 1 5 5 C 1.38157 * 120.05220 * 180.29105 * 4 3 2 6 6 C 1.38193 * 120.10853 * 359.72874 * 5 4 3 7 7 C 1.38751 * 120.05811 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.02959 * 180.02562 * 7 6 5 9 9 C 1.38619 * 120.02509 * 180.02562 * 3 2 1 10 10 C 1.50702 * 120.05328 * 359.97438 * 9 3 2 11 11 N 1.46898 * 109.46889 * 271.65382 * 10 9 3 12 12 C 1.46906 * 110.99947 * 185.82545 * 11 10 9 13 13 C 1.53001 * 109.47253 * 181.54326 * 12 11 10 14 14 C 1.50693 * 115.54913 * 295.03395 * 13 12 11 15 15 H 1.07998 * 120.00456 * 114.85956 * 14 13 12 16 16 C 1.37879 * 119.99939 * 294.57779 * 14 13 12 17 17 N 1.31516 * 120.00207 * 174.19379 * 16 14 13 18 18 Si 1.86797 * 120.00001 * 354.19956 * 16 14 13 19 19 H 1.48502 * 109.47434 * 92.39147 * 18 16 14 20 20 H 1.48499 * 109.47043 * 212.38771 * 18 16 14 21 21 H 1.48495 * 109.47176 * 332.39086 * 18 16 14 22 22 C 1.53003 * 117.49843 * 80.70442 * 13 12 11 23 23 C 1.53000 * 117.49632 * 149.36065 * 13 12 11 24 24 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46489 * 299.99024 * 1 2 3 26 26 H 1.09002 * 109.47494 * 59.98917 * 1 2 3 27 27 H 1.07997 * 119.97465 * 0.04147 * 4 3 2 28 28 H 1.08004 * 119.94188 * 179.69916 * 5 4 3 29 29 H 1.08003 * 119.96807 * 180.02562 * 6 5 4 30 30 H 0.96695 * 114.00003 * 269.97866 * 8 7 6 31 31 H 1.09006 * 109.46914 * 151.65815 * 10 9 3 32 32 H 1.08997 * 109.47434 * 31.65762 * 10 9 3 33 33 H 1.00900 * 110.99970 * 61.87241 * 11 10 9 34 34 H 1.09002 * 109.47029 * 61.54171 * 12 11 10 35 35 H 1.09000 * 109.46905 * 301.54214 * 12 11 10 36 36 H 0.96994 * 120.00184 * 180.02562 * 17 16 14 37 37 H 1.08999 * 117.49799 * 215.00732 * 22 13 12 38 38 H 1.09002 * 117.49781 * 0.02562 * 22 13 12 39 39 H 1.08992 * 117.50150 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.49423 * 144.97655 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0055 5 6 1.9173 3.6065 -0.0006 6 6 3.2971 3.6820 -0.0065 7 6 4.0567 2.5209 -0.0058 8 8 5.4136 2.5959 -0.0111 9 6 3.4302 1.2841 -0.0005 10 6 4.2527 0.0213 -0.0005 11 7 4.4870 -0.4104 1.3839 12 6 5.4005 -1.5600 1.4294 13 6 5.5894 -2.0041 2.8813 14 6 6.2739 -1.0083 3.7817 15 1 5.7347 -0.5662 4.6064 16 6 7.5903 -0.6661 3.5562 17 7 8.1538 0.2852 4.2685 18 14 8.5736 -1.5534 2.2389 19 1 8.4726 -0.8072 0.9589 20 1 9.9972 -1.6339 2.6538 21 1 8.0327 -2.9243 2.0567 22 6 4.4995 -2.8826 3.4989 23 6 5.8576 -3.4886 3.1367 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 0.2122 2.3187 0.0105 28 1 1.3277 4.5114 -0.0012 29 1 3.7847 4.6458 -0.0108 30 1 5.8030 2.6146 -0.8960 31 1 5.2088 0.2104 -0.4888 32 1 3.7179 -0.7607 -0.5395 33 1 3.6168 -0.6214 1.8490 34 1 6.3645 -1.2749 1.0082 35 1 4.9795 -2.3817 0.8500 36 1 9.0798 0.5262 4.1096 37 1 4.2775 -2.7401 4.5565 38 1 3.6480 -3.1444 2.8708 39 1 5.8990 -4.1489 2.2706 40 1 6.5295 -3.7450 3.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797469366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:33 Heat of formation + Delta-G solvation = -19.025122 kcal Electronic energy + Delta-G solvation = -21838.882487 eV Core-core repulsion = 18620.439154 eV Total energy + Delta-G solvation = -3218.443333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37561 -38.33437 -37.25737 -35.82674 -34.55480 -31.88269 -30.91122 -29.26845 -27.49771 -26.50519 -25.16540 -23.22019 -22.05772 -21.50041 -20.99998 -18.88413 -18.57123 -16.83677 -16.60541 -16.36795 -15.79896 -15.57986 -15.01902 -14.63220 -14.26693 -14.18735 -13.82806 -13.54681 -13.27985 -12.73919 -12.53922 -12.30150 -12.14321 -11.91533 -11.62049 -11.53699 -11.09180 -10.98170 -10.82484 -10.48016 -10.41074 -10.27247 -9.99255 -9.31613 -8.91442 -8.55850 -8.46519 -8.25065 -8.12747 -7.46381 -5.87912 -3.84578 1.29620 1.44569 3.19473 3.41642 3.49915 3.56364 3.66616 4.43632 4.61191 4.73937 4.84896 4.95669 5.01117 5.04948 5.13834 5.29218 5.34355 5.42817 5.47190 5.55037 5.76894 5.82084 5.98156 6.10575 6.16933 6.27606 6.29027 6.36654 6.42379 6.56580 6.57707 6.66685 6.68024 6.85036 7.21231 7.23980 7.35394 7.86391 7.91592 7.97906 8.22614 8.73484 9.15060 9.76523 11.25109 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.005908 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.757963 B = 4738.523946 C = 5664.172880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.145 3.855 4 C -0.222 4.222 5 C -0.070 4.070 6 C -0.185 4.185 7 C 0.169 3.831 8 O -0.477 6.477 9 C -0.130 4.130 10 C 0.112 3.888 11 N -0.651 5.651 12 C 0.099 3.901 13 C 0.006 3.994 14 C -0.460 4.460 15 H 0.073 0.927 16 C 0.080 3.920 17 N -0.900 5.900 18 Si 0.869 3.131 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.253 1.253 22 C -0.187 4.187 23 C -0.195 4.195 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.386 0.614 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.337 0.663 34 H 0.062 0.938 35 H 0.002 0.998 36 H 0.261 0.739 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 2.782 -13.264 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.099 3.901 4 C -0.241 4.241 5 C -0.089 4.089 6 C -0.204 4.204 7 C 0.123 3.877 8 O -0.286 6.286 9 C -0.132 4.132 10 C -0.017 4.017 11 N -0.281 5.281 12 C -0.029 4.029 13 C 0.005 3.995 14 C -0.497 4.497 15 H 0.091 0.909 16 C -0.121 4.121 17 N -0.538 5.538 18 Si 0.698 3.302 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.177 1.177 22 C -0.224 4.224 23 C -0.233 4.233 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.241 0.759 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.155 0.845 34 H 0.081 0.919 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.626 3.134 -12.507 18.759 hybrid contribution -0.154 -0.879 -1.452 1.705 sum -13.780 2.254 -13.959 19.744 Atomic orbital electron populations 1.23038 0.78601 1.03811 1.01196 1.86094 1.21114 1.26798 1.88562 1.18643 0.91312 0.84220 0.95896 1.21137 0.99800 0.92278 1.10882 1.20699 0.93963 0.96916 0.97272 1.21322 0.94033 0.98262 1.06753 1.17991 0.83327 0.90595 0.95809 1.85003 1.15418 1.95855 1.32339 1.19531 0.90589 0.96166 1.06877 1.20494 0.97478 0.91846 0.91926 1.60175 1.17266 1.38230 1.12454 1.21669 0.95625 0.89158 0.96481 1.19429 0.98146 0.89389 0.92524 1.20109 0.95673 1.21774 1.12145 0.90874 1.24831 0.97596 0.94202 0.95456 1.69905 1.13226 1.29312 1.41402 0.87001 0.78897 0.81809 0.82493 1.20752 1.22365 1.17738 1.22760 0.91361 1.07727 1.00587 1.23054 0.99135 0.99192 1.01958 0.88377 0.92550 0.92891 0.85579 0.85667 0.85393 0.75867 0.90830 0.95151 0.84512 0.91945 0.97974 0.92957 0.89839 0.91496 0.91647 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.27 9.57 -19.43 -0.19 -4.46 16 3 C 0.15 2.11 6.66 -39.24 -0.26 1.85 16 4 C -0.22 -2.70 9.04 -39.41 -0.36 -3.06 16 5 C -0.07 -0.82 10.04 -39.63 -0.40 -1.22 16 6 C -0.18 -2.49 9.98 -39.41 -0.39 -2.88 16 7 C 0.17 2.68 6.67 -39.24 -0.26 2.42 16 8 O -0.48 -7.85 12.51 -19.41 -0.24 -8.10 16 9 C -0.13 -2.14 5.47 -104.33 -0.57 -2.71 16 10 C 0.11 2.00 5.37 -4.98 -0.03 1.97 16 11 N -0.65 -13.91 6.37 -115.05 -0.73 -14.64 16 12 C 0.10 2.23 5.14 -3.82 -0.02 2.21 16 13 C 0.01 0.15 0.94 -155.66 -0.15 0.01 16 14 C -0.46 -13.41 9.29 -34.44 -0.32 -13.73 16 15 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.90 -28.68 13.96 55.43 0.77 -27.91 16 18 Si 0.87 22.41 25.00 -169.99 -4.25 18.16 16 19 H -0.28 -7.16 6.99 56.52 0.39 -6.77 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.25 -6.12 5.74 56.52 0.32 -5.80 16 22 C -0.19 -3.97 9.96 -26.69 -0.27 -4.23 16 23 C -0.20 -4.31 8.03 -26.69 -0.21 -4.52 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 27 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.39 4.14 9.06 45.56 0.41 4.55 16 31 H 0.07 1.31 7.46 -51.93 -0.39 0.92 16 32 H 0.03 0.51 7.58 -51.93 -0.39 0.12 16 33 H 0.34 7.02 8.77 -39.29 -0.34 6.68 16 34 H 0.06 1.50 5.05 -51.93 -0.26 1.24 16 35 H 0.00 0.05 8.09 -51.93 -0.42 -0.37 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -34.92 329.91 -7.13 -42.05 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.12 Total: 10.26 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -2.34 Total: -20.34 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.04 Total: -42.55 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.43 Total: -12.55 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.25 Total: 18.16 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.92 -7.13 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797469366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.026 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds