Wall clock time and date at job start Mon Mar 30 2020 01:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99948 * 2 1 4 4 C 1.38787 * 120.02769 * 0.26316 * 3 2 1 5 5 C 1.38157 * 120.05220 * 180.29105 * 4 3 2 6 6 C 1.38193 * 120.10853 * 359.72874 * 5 4 3 7 7 C 1.38751 * 120.05811 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.02959 * 180.02562 * 7 6 5 9 9 C 1.38619 * 120.02509 * 180.02562 * 3 2 1 10 10 C 1.50702 * 120.05328 * 359.97438 * 9 3 2 11 11 N 1.46898 * 109.46889 * 271.65382 * 10 9 3 12 12 C 1.46906 * 110.99947 * 185.82545 * 11 10 9 13 13 C 1.53001 * 109.47253 * 181.54326 * 12 11 10 14 14 C 1.50693 * 115.54913 * 295.03395 * 13 12 11 15 15 H 1.07998 * 120.00456 * 114.85956 * 14 13 12 16 16 C 1.37879 * 119.99939 * 294.57779 * 14 13 12 17 17 N 1.31516 * 120.00207 * 174.19379 * 16 14 13 18 18 Si 1.86797 * 120.00001 * 354.19956 * 16 14 13 19 19 H 1.48502 * 109.47434 * 92.39147 * 18 16 14 20 20 H 1.48499 * 109.47043 * 212.38771 * 18 16 14 21 21 H 1.48495 * 109.47176 * 332.39086 * 18 16 14 22 22 C 1.53003 * 117.49843 * 80.70442 * 13 12 11 23 23 C 1.53000 * 117.49632 * 149.36065 * 13 12 11 24 24 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46489 * 299.99024 * 1 2 3 26 26 H 1.09002 * 109.47494 * 59.98917 * 1 2 3 27 27 H 1.07997 * 119.97465 * 0.04147 * 4 3 2 28 28 H 1.08004 * 119.94188 * 179.69916 * 5 4 3 29 29 H 1.08003 * 119.96807 * 180.02562 * 6 5 4 30 30 H 0.96695 * 114.00003 * 269.97866 * 8 7 6 31 31 H 1.09006 * 109.46914 * 151.65815 * 10 9 3 32 32 H 1.08997 * 109.47434 * 31.65762 * 10 9 3 33 33 H 1.00900 * 110.99970 * 61.87241 * 11 10 9 34 34 H 1.09002 * 109.47029 * 61.54171 * 12 11 10 35 35 H 1.09000 * 109.46905 * 301.54214 * 12 11 10 36 36 H 0.96994 * 120.00184 * 180.02562 * 17 16 14 37 37 H 1.08999 * 117.49799 * 215.00732 * 22 13 12 38 38 H 1.09002 * 117.49781 * 0.02562 * 22 13 12 39 39 H 1.08992 * 117.50150 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.49423 * 144.97655 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0055 5 6 1.9173 3.6065 -0.0006 6 6 3.2971 3.6820 -0.0065 7 6 4.0567 2.5209 -0.0058 8 8 5.4136 2.5959 -0.0111 9 6 3.4302 1.2841 -0.0005 10 6 4.2527 0.0213 -0.0005 11 7 4.4870 -0.4104 1.3839 12 6 5.4005 -1.5600 1.4294 13 6 5.5894 -2.0041 2.8813 14 6 6.2739 -1.0083 3.7817 15 1 5.7347 -0.5662 4.6064 16 6 7.5903 -0.6661 3.5562 17 7 8.1538 0.2852 4.2685 18 14 8.5736 -1.5534 2.2389 19 1 8.4726 -0.8072 0.9589 20 1 9.9972 -1.6339 2.6538 21 1 8.0327 -2.9243 2.0567 22 6 4.4995 -2.8826 3.4989 23 6 5.8576 -3.4886 3.1367 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 0.2122 2.3187 0.0105 28 1 1.3277 4.5114 -0.0012 29 1 3.7847 4.6458 -0.0108 30 1 5.8030 2.6146 -0.8960 31 1 5.2088 0.2104 -0.4888 32 1 3.7179 -0.7607 -0.5395 33 1 3.6168 -0.6214 1.8490 34 1 6.3645 -1.2749 1.0082 35 1 4.9795 -2.3817 0.8500 36 1 9.0798 0.5262 4.1096 37 1 4.2775 -2.7401 4.5565 38 1 3.6480 -3.1444 2.8708 39 1 5.8990 -4.1489 2.2706 40 1 6.5295 -3.7450 3.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797469366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:32 Heat of formation + Delta-G solvation = -46.236365 kcal Electronic energy + Delta-G solvation = -21840.062455 eV Core-core repulsion = 18620.439154 eV Total energy + Delta-G solvation = -3219.623301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39652 -39.38440 -39.02534 -36.88547 -36.06815 -34.14788 -32.12815 -30.28187 -28.50827 -28.02712 -26.97763 -24.78276 -23.15692 -23.07102 -22.24765 -20.81337 -19.67057 -18.38250 -17.88976 -17.60693 -17.06174 -16.70897 -16.61644 -15.90753 -15.76353 -15.40065 -15.27378 -15.00383 -14.85391 -14.64442 -13.90133 -13.54190 -13.41820 -13.14894 -13.01079 -12.86725 -12.64940 -12.36881 -12.15662 -12.11308 -11.99876 -11.87508 -11.48666 -11.25507 -10.89078 -10.53176 -10.26740 -9.62434 -9.16852 -9.01488 -8.18377 -6.19076 0.25870 0.42144 1.36578 1.39564 1.53131 2.32192 2.44779 2.62982 3.05672 3.31903 3.43920 3.65587 3.82446 3.95675 4.09662 4.20231 4.27491 4.35187 4.43552 4.45450 4.49285 4.52916 4.56095 4.68160 4.69369 4.75912 4.86454 4.90694 5.00989 5.11247 5.29895 5.40239 5.43747 5.52170 5.53021 5.70640 5.80129 6.30858 6.40016 6.45048 6.65226 6.83398 6.90312 7.45720 8.98721 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018287 B = 0.005908 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.757963 B = 4738.523946 C = 5664.172880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.140 3.860 4 C -0.220 4.220 5 C -0.061 4.061 6 C -0.196 4.196 7 C 0.146 3.854 8 O -0.506 6.506 9 C -0.163 4.163 10 C 0.120 3.880 11 N -0.674 5.674 12 C 0.108 3.892 13 C -0.025 4.025 14 C -0.457 4.457 15 H 0.021 0.979 16 C 0.020 3.980 17 N -0.955 5.955 18 Si 0.935 3.065 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.223 1.223 22 C -0.168 4.168 23 C -0.184 4.184 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.141 0.859 30 H 0.403 0.597 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.337 0.663 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.565 1.693 -15.320 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.094 3.906 4 C -0.238 4.238 5 C -0.079 4.079 6 C -0.214 4.214 7 C 0.101 3.899 8 O -0.318 6.318 9 C -0.165 4.165 10 C -0.009 4.009 11 N -0.305 5.305 12 C -0.021 4.021 13 C -0.027 4.027 14 C -0.495 4.495 15 H 0.039 0.961 16 C -0.176 4.176 17 N -0.596 5.596 18 Si 0.760 3.240 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.145 1.145 22 C -0.205 4.205 23 C -0.222 4.222 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.159 0.841 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.891 2.020 -14.582 21.662 hybrid contribution 0.374 -0.473 -0.748 0.961 sum -15.517 1.547 -15.331 21.868 Atomic orbital electron populations 1.23360 0.76244 1.05470 1.02466 1.86057 1.23598 1.26648 1.88420 1.18771 0.90880 0.85425 0.95557 1.21520 1.01337 0.91491 1.09474 1.21158 0.93421 0.98314 0.94964 1.21552 0.94996 0.97979 1.06890 1.18307 0.83128 0.91545 0.96941 1.84932 1.16469 1.95996 1.34416 1.19548 0.91711 0.95567 1.09646 1.20400 0.97550 0.92974 0.89962 1.60127 1.17298 1.38134 1.14919 1.21471 0.95287 0.90354 0.95000 1.19337 1.00682 0.89528 0.93109 1.20263 0.95606 1.22258 1.11382 0.96101 1.25702 0.98880 0.95017 0.98039 1.70075 1.13643 1.31792 1.44072 0.85968 0.76843 0.81979 0.79203 1.20492 1.22672 1.14501 1.22794 0.91961 1.05203 1.00512 1.23074 0.99231 0.97249 1.02630 0.86714 0.91793 0.90973 0.82407 0.82011 0.84114 0.73810 0.91721 0.94173 0.84525 0.93862 0.95144 0.93096 0.90763 0.88236 0.88569 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.47 9.57 -92.44 -0.88 -9.35 16 3 C 0.14 3.86 6.66 22.49 0.15 4.01 16 4 C -0.22 -4.71 9.04 22.38 0.20 -4.51 16 5 C -0.06 -1.25 10.04 22.24 0.22 -1.03 16 6 C -0.20 -5.04 9.98 22.38 0.22 -4.82 16 7 C 0.15 4.69 6.67 22.49 0.15 4.84 16 8 O -0.51 -17.26 12.51 -92.38 -1.16 -18.42 16 9 C -0.16 -5.34 5.47 -19.67 -0.11 -5.45 16 10 C 0.12 4.26 5.37 85.56 0.46 4.72 16 11 N -0.67 -28.72 6.37 -517.91 -3.30 -32.02 16 12 C 0.11 4.68 5.14 86.30 0.44 5.12 16 13 C -0.03 -1.21 0.94 -52.93 -0.05 -1.26 16 14 C -0.46 -27.52 9.29 25.60 0.24 -27.29 16 15 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 16 C 0.02 1.21 5.47 84.65 0.46 1.67 16 17 N -0.95 -63.53 13.96 21.45 0.30 -63.23 16 18 Si 0.93 46.83 25.00 68.60 1.71 48.55 16 19 H -0.28 -13.75 6.99 99.48 0.70 -13.06 16 20 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 21 H -0.22 -9.91 5.74 99.48 0.57 -9.34 16 22 C -0.17 -6.75 9.96 30.62 0.30 -6.44 16 23 C -0.18 -7.58 8.03 30.62 0.25 -7.34 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.06 0.85 7.65 -2.38 -0.02 0.83 16 26 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 27 H 0.16 2.29 6.29 -2.91 -0.02 2.27 16 28 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.40 9.15 9.06 -74.06 -0.67 8.48 16 31 H 0.06 2.34 7.46 -2.38 -0.02 2.32 16 32 H 0.04 1.32 7.58 -2.39 -0.02 1.30 16 33 H 0.34 13.96 8.77 -89.69 -0.79 13.17 16 34 H 0.04 2.03 5.05 -2.39 -0.01 2.02 16 35 H 0.03 1.15 8.09 -2.39 -0.02 1.13 16 36 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -78.91 329.91 0.19 -78.72 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.54 Total: 32.12 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.06 Total: -36.38 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.00 Total: -95.24 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -2.04 Total: -27.77 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.71 Total: 48.55 kcal Total: -78.91 0.19 -78.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797469366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.484 kcal (2) G-P(sol) polarization free energy of solvation -78.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds