Wall clock time and date at job start Mon Mar 30 2020 01:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 O 1.45200 * 109.46848 * 65.00290 * 4 3 2 6 6 C 1.34230 * 116.99996 * 180.02562 * 5 4 3 7 7 O 1.20829 * 119.99834 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00052 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46957 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46774 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00243 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99731 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00222 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00116 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47025 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47544 * 120.00338 * 14 12 10 17 17 H 1.48503 * 109.47441 * 240.00389 * 14 12 10 18 18 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 19 19 C 1.38914 * 120.07317 * 359.97438 * 18 2 1 20 20 C 1.38100 * 119.92419 * 179.97438 * 19 18 2 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 25 25 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 26 26 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 27 27 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 28 28 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 29 29 H 1.08997 * 109.46830 * 185.00168 * 4 3 2 30 30 H 1.08998 * 109.47240 * 305.00434 * 4 3 2 31 31 H 1.09001 * 109.46984 * 299.99230 * 8 6 5 32 32 H 1.08998 * 109.47264 * 59.99271 * 8 6 5 33 33 H 1.09001 * 109.47001 * 299.99656 * 9 8 6 34 34 H 1.09003 * 109.46701 * 59.99530 * 9 8 6 35 35 H 0.97000 * 119.99947 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.03435 * 359.97438 * 19 18 2 37 37 H 1.08000 * 119.95830 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 40 40 H 1.07999 * 120.04050 * 180.27354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 8 1.1859 1.9982 -2.0916 6 6 1.2346 2.4009 -3.3712 7 8 2.3002 2.5099 -3.9301 8 6 -0.0399 2.7183 -4.1102 9 6 0.2936 3.1506 -5.5395 10 6 -0.9809 3.4674 -6.2787 11 1 -1.9333 3.3704 -5.7790 12 6 -0.9308 3.8819 -7.5927 13 7 0.2291 4.0004 -8.2011 14 14 -2.5105 4.2752 -8.5088 15 1 -3.6713 4.0641 -7.6071 16 1 -2.4835 5.6906 -8.9572 17 1 -2.6325 3.3840 -9.6904 18 6 2.1634 -1.2096 -0.0005 19 6 1.4704 -2.4135 -0.0005 20 6 2.1641 -3.6077 -0.0016 21 6 3.5470 -3.6058 -0.0032 22 6 4.2399 -2.4092 0.0021 23 6 3.5525 -1.2114 -0.0025 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0732 2.6065 -1.4437 30 1 2.9642 0.9132 -1.9816 31 1 -0.6745 1.8325 -4.1369 32 1 -0.5645 3.5259 -3.5997 33 1 0.9281 4.0365 -5.5124 34 1 0.8185 2.3432 -6.0502 35 1 0.2643 4.2917 -9.1257 36 1 0.3904 -2.4156 0.0003 37 1 1.6259 -4.5440 -0.0020 38 1 4.0869 -4.5412 -0.0036 39 1 5.3199 -2.4113 0.0057 40 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618291.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:04 Heat of formation + Delta-G solvation = -81.179895 kcal Electronic energy + Delta-G solvation = -20737.710330 eV Core-core repulsion = 17516.571764 eV Total energy + Delta-G solvation = -3221.138566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50839 -40.43117 -38.03774 -36.79910 -35.66174 -33.23563 -32.36926 -31.38605 -30.26786 -28.14430 -26.72242 -24.69586 -23.73843 -22.92215 -21.55291 -21.40321 -19.17210 -18.61067 -17.99291 -17.80557 -17.04217 -16.62390 -16.48528 -16.35669 -15.60404 -15.31544 -15.15905 -14.56061 -14.48922 -14.33391 -14.08348 -13.75656 -13.46636 -13.38165 -13.17180 -12.91135 -12.84985 -12.54666 -12.48125 -12.25985 -12.03504 -11.76439 -11.72588 -11.55994 -11.44424 -11.26241 -10.74790 -10.60166 -9.79225 -8.21690 -8.19848 -6.35309 0.57130 0.73580 1.24399 1.42693 1.43799 1.57167 1.72386 2.20117 2.42387 3.02947 3.12596 3.78981 3.91368 3.94698 4.03628 4.12279 4.27755 4.30604 4.39576 4.42686 4.44659 4.59172 4.62169 4.65906 4.71003 4.85260 4.88322 4.93932 5.03318 5.19130 5.37589 5.40187 5.46117 5.53007 5.64427 5.78300 5.79162 6.02537 6.11614 6.33807 6.59274 6.79145 6.86280 7.35215 8.91642 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.003055 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.305336 B = 9162.453153 C = 9262.603860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.633 5.633 3 C 0.133 3.867 4 C 0.039 3.961 5 O -0.348 6.348 6 C 0.463 3.537 7 O -0.549 6.549 8 C -0.093 4.093 9 C 0.038 3.962 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.936 5.936 14 Si 0.975 3.025 15 H -0.252 1.252 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.199 3.801 19 C -0.213 4.213 20 C -0.081 4.081 21 C -0.193 4.193 22 C -0.082 4.082 23 C -0.217 4.217 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.118 0.882 33 H -0.011 1.011 34 H -0.014 1.014 35 H 0.264 0.736 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -11.403 22.216 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C 0.010 3.990 4 C -0.037 4.037 5 O -0.265 6.265 6 C 0.309 3.691 7 O -0.439 6.439 8 C -0.130 4.130 9 C 0.001 3.999 10 C -0.580 4.580 11 H 0.096 0.904 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.799 3.201 15 H -0.176 1.176 16 H -0.206 1.206 17 H -0.207 1.207 18 C 0.097 3.903 19 C -0.235 4.235 20 C -0.100 4.100 21 C -0.213 4.213 22 C -0.100 4.100 23 C -0.239 4.239 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.008 0.992 34 H 0.004 0.996 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.475 -11.164 21.953 24.753 hybrid contribution 0.002 0.324 -1.097 1.144 sum 2.477 -10.840 20.856 23.635 Atomic orbital electron populations 1.21752 0.78492 1.03245 1.01624 1.46562 1.05760 1.02444 1.79556 1.21641 0.99863 0.85703 0.91814 1.23851 0.83859 1.00889 0.95083 1.86511 1.36688 1.77365 1.25900 1.24518 0.92491 0.71841 0.80292 1.90629 1.33860 1.50440 1.68946 1.21487 0.91622 1.04595 0.95285 1.18794 0.96107 0.94811 0.90183 1.21667 0.93618 1.45346 0.97395 0.90370 1.26123 1.00102 0.95182 0.98927 1.70172 1.26938 1.47999 1.12518 0.85250 0.78954 0.77626 0.78284 1.17568 1.20578 1.20671 1.18140 0.91746 0.86392 0.94016 1.20942 1.00384 0.91415 1.10782 1.21202 0.94637 0.97783 0.96343 1.21208 0.94556 0.98579 1.06978 1.21192 1.00500 0.91964 0.96388 1.20924 0.92274 0.99510 1.11188 0.92024 0.90805 0.91669 0.87624 0.86452 0.90125 0.93030 0.86948 0.86439 0.99217 0.99563 0.92754 0.85249 0.84461 0.84866 0.84573 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.01 127.77 1.28 2.89 16 2 N -0.63 -12.82 2.97 -722.18 -2.15 -14.97 16 3 C 0.13 2.33 5.57 86.38 0.48 2.82 16 4 C 0.04 0.97 5.81 71.98 0.42 1.39 16 5 O -0.35 -10.68 9.03 -51.42 -0.46 -11.15 16 6 C 0.46 18.28 7.96 71.24 0.57 18.85 16 7 O -0.55 -26.16 15.73 21.96 0.35 -25.81 16 8 C -0.09 -3.72 5.75 29.85 0.17 -3.55 16 9 C 0.04 2.09 4.26 29.85 0.13 2.22 16 10 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 11 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 12 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 13 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 14 Si 0.98 43.72 29.54 68.60 2.03 45.74 16 15 H -0.25 -10.42 7.11 99.48 0.71 -9.72 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 C 0.20 4.41 6.55 38.21 0.25 4.66 16 19 C -0.21 -4.47 9.21 22.40 0.21 -4.27 16 20 C -0.08 -1.54 10.04 22.25 0.22 -1.32 16 21 C -0.19 -3.59 10.04 22.29 0.22 -3.37 16 22 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 23 C -0.22 -4.53 9.21 22.40 0.21 -4.33 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 1.38 7.09 -2.39 -0.02 1.37 16 26 H 0.06 1.15 6.20 -2.39 -0.01 1.13 16 27 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 28 H 0.12 1.57 6.20 -2.38 -0.01 1.55 16 29 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 30 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 32 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 33 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 34 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.13 2.38 6.14 -2.91 -0.02 2.37 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.13 2.31 6.14 -2.91 -0.02 2.29 16 Total: -1.00 -73.52 337.86 6.14 -67.38 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.02 Total: 12.37 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 5.07 Total: -15.32 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.86 Total: -73.22 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.12 Total: -36.96 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.52 6.14 -67.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618291.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.798 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds