Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99639 * 2 1 4 4 C 1.53006 * 109.46650 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.95342 * 194.66195 * 4 3 2 6 6 C 1.53934 * 113.76266 * 326.31221 * 4 3 2 7 7 C 1.53927 * 86.34069 * 138.14936 * 6 4 3 8 8 N 1.47956 * 86.18217 * 336.27729 * 7 6 4 9 9 C 1.46908 * 111.00028 * 137.58283 * 8 7 6 10 10 C 1.50700 * 109.46910 * 70.64158 * 9 8 7 11 11 C 1.38297 * 119.93158 * 269.72879 * 10 9 8 12 12 C 1.38109 * 120.06805 * 179.72685 * 11 10 9 13 13 C 1.38866 * 119.92864 * 0.52513 * 12 11 10 14 14 O 1.35752 * 120.07024 * 179.72637 * 13 12 11 15 15 C 1.34824 * 117.00354 * 174.48421 * 14 13 12 16 16 H 1.08005 * 120.00298 * 5.06015 * 15 14 13 17 17 C 1.38660 * 119.99990 * 185.05524 * 15 14 13 18 18 N 1.31552 * 120.00380 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47252 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46601 * 120.00313 * 19 17 15 22 22 H 1.48500 * 109.46769 * 239.99794 * 19 17 15 23 23 C 1.38882 * 119.86567 * 359.74618 * 13 12 11 24 24 C 1.38100 * 119.93054 * 0.02562 * 23 13 12 25 25 H 1.08996 * 109.47424 * 300.00542 * 1 2 3 26 26 H 1.09007 * 109.47053 * 60.00716 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47665 * 60.00023 * 3 2 1 29 29 H 1.09001 * 109.46968 * 299.99164 * 3 2 1 30 30 H 1.08994 * 113.73069 * 252.50895 * 6 4 3 31 31 H 1.08998 * 113.73276 * 23.78782 * 6 4 3 32 32 H 1.08999 * 113.76082 * 90.59824 * 7 6 4 33 33 H 1.09003 * 113.75907 * 221.85312 * 7 6 4 34 34 H 1.08993 * 109.47140 * 190.64240 * 9 8 7 35 35 H 1.09000 * 109.46808 * 310.64685 * 9 8 7 36 36 H 1.08002 * 119.96712 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.03221 * 180.27295 * 12 11 10 38 38 H 0.96995 * 120.00278 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.03273 * 179.97438 * 23 13 12 40 40 H 1.07991 * 119.96557 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 4.0358 2.1191 0.2547 6 6 4.0609 -0.0327 0.7825 7 6 5.0572 -0.2222 -0.3754 8 7 4.0839 0.5232 -1.2038 9 6 4.7652 1.4924 -2.0726 10 6 5.5164 0.7574 -3.1527 11 6 6.8299 0.3781 -2.9438 12 6 7.5192 -0.3005 -3.9295 13 6 6.8956 -0.5922 -5.1355 14 8 7.5723 -1.2542 -6.1086 15 6 6.8755 -1.6060 -7.2078 16 1 5.8493 -1.2890 -7.3212 17 6 7.4764 -2.3748 -8.1930 18 7 8.7263 -2.7613 -8.0549 19 14 6.5111 -2.8617 -9.7164 20 1 5.1372 -2.3045 -9.6310 21 1 7.1883 -2.3247 -10.9240 22 1 6.4407 -4.3423 -9.8055 23 6 5.5783 -0.2049 -5.3444 24 6 4.8929 0.4692 -4.3530 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 4.5335 0.2252 1.7301 31 1 3.3358 -0.8414 0.8742 32 1 6.0026 0.3007 -0.2313 33 1 5.1878 -1.2616 -0.6768 34 1 4.0278 2.1531 -2.5281 35 1 5.4649 2.0821 -1.4803 36 1 7.3157 0.6092 -2.0073 37 1 8.5435 -0.6004 -3.7641 38 1 9.1465 -3.2994 -8.7439 39 1 5.0909 -0.4300 -6.2815 40 1 3.8687 0.7709 -4.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815127322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = -9.570792 kcal Electronic energy + Delta-G solvation = -20957.539432 eV Core-core repulsion = 17739.506070 eV Total energy + Delta-G solvation = -3218.033362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18651 -38.84946 -37.46139 -36.38491 -32.43487 -31.44805 -30.14522 -29.31147 -27.81648 -26.26862 -25.39830 -23.58980 -23.21899 -21.88881 -20.34568 -19.44731 -17.92937 -16.96629 -16.57649 -16.10065 -15.96986 -15.46684 -14.99568 -14.57993 -14.39967 -13.93961 -13.65118 -13.52278 -13.30490 -12.88835 -12.66376 -12.45739 -12.25230 -11.82353 -11.66664 -11.60626 -11.48504 -11.16216 -11.02920 -10.71830 -10.55818 -10.43200 -10.36748 -10.31878 -9.73002 -9.28497 -8.81037 -8.61105 -8.12153 -7.12970 -6.42135 -4.00660 2.26725 2.34100 3.14336 3.16189 3.21750 3.65355 3.95858 3.99720 4.54875 4.65238 4.77369 5.03917 5.09937 5.13398 5.18185 5.20190 5.27880 5.29327 5.37317 5.41755 5.51355 5.52770 5.61321 5.74822 5.78268 5.82334 5.93015 6.01351 6.24090 6.28357 6.43828 6.52793 6.74727 6.96611 7.03497 7.10285 7.25717 7.29203 7.46222 7.49197 7.87397 8.03492 9.03914 9.74620 10.76163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.003475 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.190343 B = 8055.669117 C = 8699.623759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.084 3.916 4 C 0.019 3.981 5 H 0.087 0.913 6 C -0.135 4.135 7 C 0.009 3.991 8 N -0.457 5.457 9 C 0.078 3.922 10 C -0.178 4.178 11 C -0.067 4.067 12 C -0.193 4.193 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.051 4.051 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.269 0.731 39 H 0.126 0.874 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 8.045 15.797 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C 0.007 3.993 4 C -0.090 4.090 5 H 0.105 0.895 6 C -0.173 4.173 7 C -0.120 4.120 8 N -0.180 5.180 9 C -0.050 4.050 10 C -0.179 4.179 11 C -0.086 4.086 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.254 4.254 24 C -0.070 4.070 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.909 7.335 15.167 20.632 hybrid contribution -0.133 0.576 -0.463 0.750 sum -12.042 7.911 14.704 20.586 Atomic orbital electron populations 1.22703 0.81705 1.02593 0.99497 1.87958 1.18807 1.27261 1.95210 1.22144 0.92675 0.84927 0.99597 1.23576 0.94317 0.97693 0.93412 0.89529 1.23300 0.98787 0.98497 0.96673 1.23744 0.94420 1.01109 0.92705 1.68708 1.22539 1.17362 1.09405 1.21344 0.96035 0.93514 0.94084 1.19014 0.94658 1.08420 0.95790 1.20458 0.93675 0.97292 0.97201 1.20156 1.00800 1.07457 0.92860 1.19380 0.90564 0.90976 0.88904 1.83973 1.36427 1.63289 1.24596 1.21382 0.97276 1.33069 0.94959 0.89029 1.25286 0.96229 0.96012 0.99021 1.70045 1.11305 1.34267 1.34285 0.85652 0.79156 0.78632 0.80024 1.19088 1.20182 1.20132 1.21159 0.95813 1.07139 1.01239 1.20555 0.97863 0.96077 0.92457 0.94596 0.94268 0.89784 0.93275 0.93112 0.91735 0.88028 0.91607 0.89367 0.91024 0.94504 0.87623 0.86654 0.92115 0.85629 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.44 9.16 -35.23 -0.32 -4.76 16 3 C 0.08 0.85 6.30 37.16 0.23 1.08 16 4 C 0.02 0.21 3.84 -66.65 -0.26 -0.05 16 5 H 0.09 0.80 7.79 -51.93 -0.40 0.40 16 6 C -0.13 -1.46 7.68 -25.80 -0.20 -1.66 16 7 C 0.01 0.11 6.95 -2.77 -0.02 0.09 16 8 N -0.46 -6.37 6.06 -232.16 -1.41 -7.78 16 9 C 0.08 1.11 4.97 -4.97 -0.02 1.08 16 10 C -0.18 -3.15 5.12 -104.58 -0.54 -3.69 16 11 C -0.07 -1.23 8.97 -39.61 -0.36 -1.59 16 12 C -0.19 -4.19 9.99 -39.40 -0.39 -4.58 16 13 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 14 O -0.18 -5.23 9.76 0.06 0.00 -5.23 16 15 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 16 H 0.09 2.44 5.20 -52.48 -0.27 2.16 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 19 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 23 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 24 C -0.05 -0.98 9.69 -39.61 -0.38 -1.37 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.22 6.89 -51.93 -0.36 0.86 16 32 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.04 0.47 7.63 -51.93 -0.40 0.08 16 36 H 0.11 1.62 7.46 -52.49 -0.39 1.23 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -31.81 332.06 -8.08 -39.89 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.85 Total: 3.14 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -1.24 Total: -21.19 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: -0.65 Total: -32.72 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.32 Total: -9.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.81 -8.08 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815127322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.322 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds