Wall clock time and date at job start Mon Mar 30 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99639 * 2 1 4 4 C 1.53006 * 109.46650 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.95342 * 194.66195 * 4 3 2 6 6 C 1.53934 * 113.76266 * 326.31221 * 4 3 2 7 7 C 1.53927 * 86.34069 * 138.14936 * 6 4 3 8 8 N 1.47956 * 86.18217 * 336.27729 * 7 6 4 9 9 C 1.46908 * 111.00028 * 137.58283 * 8 7 6 10 10 C 1.50700 * 109.46910 * 70.64158 * 9 8 7 11 11 C 1.38297 * 119.93158 * 269.72879 * 10 9 8 12 12 C 1.38109 * 120.06805 * 179.72685 * 11 10 9 13 13 C 1.38866 * 119.92864 * 0.52513 * 12 11 10 14 14 O 1.35752 * 120.07024 * 179.72637 * 13 12 11 15 15 C 1.34824 * 117.00354 * 174.48421 * 14 13 12 16 16 H 1.08005 * 120.00298 * 5.06015 * 15 14 13 17 17 C 1.38660 * 119.99990 * 185.05524 * 15 14 13 18 18 N 1.31552 * 120.00380 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47252 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46601 * 120.00313 * 19 17 15 22 22 H 1.48500 * 109.46769 * 239.99794 * 19 17 15 23 23 C 1.38882 * 119.86567 * 359.74618 * 13 12 11 24 24 C 1.38100 * 119.93054 * 0.02562 * 23 13 12 25 25 H 1.08996 * 109.47424 * 300.00542 * 1 2 3 26 26 H 1.09007 * 109.47053 * 60.00716 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47665 * 60.00023 * 3 2 1 29 29 H 1.09001 * 109.46968 * 299.99164 * 3 2 1 30 30 H 1.08994 * 113.73069 * 252.50895 * 6 4 3 31 31 H 1.08998 * 113.73276 * 23.78782 * 6 4 3 32 32 H 1.08999 * 113.76082 * 90.59824 * 7 6 4 33 33 H 1.09003 * 113.75907 * 221.85312 * 7 6 4 34 34 H 1.08993 * 109.47140 * 190.64240 * 9 8 7 35 35 H 1.09000 * 109.46808 * 310.64685 * 9 8 7 36 36 H 1.08002 * 119.96712 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.03221 * 180.27295 * 12 11 10 38 38 H 0.96995 * 120.00278 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.03273 * 179.97438 * 23 13 12 40 40 H 1.07991 * 119.96557 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 4.0358 2.1191 0.2547 6 6 4.0609 -0.0327 0.7825 7 6 5.0572 -0.2222 -0.3754 8 7 4.0839 0.5232 -1.2038 9 6 4.7652 1.4924 -2.0726 10 6 5.5164 0.7574 -3.1527 11 6 6.8299 0.3781 -2.9438 12 6 7.5192 -0.3005 -3.9295 13 6 6.8956 -0.5922 -5.1355 14 8 7.5723 -1.2542 -6.1086 15 6 6.8755 -1.6060 -7.2078 16 1 5.8493 -1.2890 -7.3212 17 6 7.4764 -2.3748 -8.1930 18 7 8.7263 -2.7613 -8.0549 19 14 6.5111 -2.8617 -9.7164 20 1 5.1372 -2.3045 -9.6310 21 1 7.1883 -2.3247 -10.9240 22 1 6.4407 -4.3423 -9.8055 23 6 5.5783 -0.2049 -5.3444 24 6 4.8929 0.4692 -4.3530 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8901 30 1 4.5335 0.2252 1.7301 31 1 3.3358 -0.8414 0.8742 32 1 6.0026 0.3007 -0.2313 33 1 5.1878 -1.2616 -0.6768 34 1 4.0278 2.1531 -2.5281 35 1 5.4649 2.0821 -1.4803 36 1 7.3157 0.6092 -2.0073 37 1 8.5435 -0.6004 -3.7641 38 1 9.1465 -3.2994 -8.7439 39 1 5.0909 -0.4300 -6.2815 40 1 3.8687 0.7709 -4.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815127322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:46 Heat of formation + Delta-G solvation = -31.861014 kcal Electronic energy + Delta-G solvation = -20958.506008 eV Core-core repulsion = 17739.506070 eV Total energy + Delta-G solvation = -3218.999939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25805 -40.51452 -38.49575 -37.90193 -34.38864 -32.86532 -31.80373 -30.14772 -29.19726 -27.37525 -26.96724 -24.87528 -24.16575 -23.53135 -21.93041 -20.34498 -19.80156 -18.84641 -17.45259 -16.94421 -16.87618 -16.54218 -16.38367 -16.26185 -15.93801 -15.49527 -15.29167 -14.70309 -14.63654 -14.40038 -14.20198 -13.61560 -13.32544 -13.18662 -13.05755 -12.91505 -12.62984 -12.43231 -12.31866 -12.11865 -12.07002 -11.98604 -11.51654 -11.29873 -11.17055 -10.79889 -10.47278 -9.78115 -9.59156 -8.89998 -8.48146 -6.16201 0.59594 0.67973 1.33990 1.42406 1.52561 2.17079 2.74970 2.94069 3.05303 3.25925 3.51430 3.70310 3.90990 4.00119 4.06456 4.17895 4.31054 4.38039 4.45210 4.52886 4.54694 4.58013 4.61321 4.64434 4.73673 4.78276 4.81313 4.91901 4.93362 5.06714 5.08684 5.14829 5.27653 5.40838 5.46621 5.63052 5.71844 5.82442 6.02419 6.18367 6.24696 6.44500 6.96745 7.77678 8.75463 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025630 B = 0.003475 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.190343 B = 8055.669117 C = 8699.623759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.080 3.920 4 C 0.026 3.974 5 H 0.113 0.887 6 C -0.125 4.125 7 C 0.002 3.998 8 N -0.485 5.485 9 C 0.081 3.919 10 C -0.153 4.153 11 C -0.058 4.058 12 C -0.204 4.204 13 C 0.114 3.886 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.099 0.901 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.253 1.253 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.244 4.244 24 C -0.055 4.055 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.273 0.727 39 H 0.115 0.885 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.131 9.971 17.951 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.003 3.997 4 C -0.083 4.083 5 H 0.130 0.870 6 C -0.162 4.162 7 C -0.127 4.127 8 N -0.208 5.208 9 C -0.047 4.047 10 C -0.154 4.154 11 C -0.076 4.076 12 C -0.223 4.223 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.176 1.176 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.263 4.263 24 C -0.074 4.074 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.078 9.298 17.373 24.217 hybrid contribution 0.405 0.140 -0.798 0.905 sum -13.673 9.437 16.575 23.468 Atomic orbital electron populations 1.22826 0.80396 1.03172 1.00443 1.87919 1.20411 1.28488 1.95433 1.22278 0.92230 0.84525 1.00696 1.23723 0.94895 0.98451 0.91216 0.86987 1.23182 0.97769 0.98139 0.97153 1.23798 0.95432 0.99901 0.93581 1.68681 1.22964 1.18141 1.11059 1.21379 0.96579 0.93387 0.93350 1.19568 0.94421 1.05444 0.95920 1.20861 0.93826 0.95422 0.97503 1.20440 1.01169 1.07939 0.92753 1.19919 0.91964 0.92218 0.89569 1.83934 1.38049 1.66033 1.25947 1.21850 0.97861 1.33738 0.95567 0.88342 1.26590 0.97360 0.95603 1.02462 1.70183 1.13484 1.36193 1.36059 0.84531 0.77977 0.78475 0.75211 1.17645 1.19120 1.19252 1.21235 0.95285 1.07876 1.01915 1.20876 0.98901 0.95287 0.92293 0.92753 0.94146 0.89535 0.90751 0.93354 0.89301 0.89622 0.90144 0.91800 0.89850 0.91970 0.83680 0.86830 0.91803 0.86676 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -8.63 9.16 -148.98 -1.36 -9.99 16 3 C 0.08 1.33 6.30 71.98 0.45 1.78 16 4 C 0.03 0.45 3.84 45.02 0.17 0.62 16 5 H 0.11 1.42 7.79 -2.39 -0.02 1.41 16 6 C -0.12 -2.28 7.68 31.24 0.24 -2.04 16 7 C 0.00 0.04 6.95 86.40 0.60 0.64 16 8 N -0.49 -11.83 6.06 -888.41 -5.38 -17.21 16 9 C 0.08 1.94 4.97 85.56 0.43 2.36 16 10 C -0.15 -4.98 5.12 -19.83 -0.10 -5.09 16 11 C -0.06 -1.98 8.97 22.25 0.20 -1.78 16 12 C -0.20 -8.94 9.99 22.39 0.22 -8.72 16 13 C 0.11 5.89 6.65 22.57 0.15 6.04 16 14 O -0.23 -14.48 9.76 -22.69 -0.22 -14.70 16 15 C -0.41 -24.91 9.49 67.92 0.64 -24.26 16 16 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 17 C -0.02 -1.33 5.49 84.84 0.47 -0.86 16 18 N -0.92 -57.63 13.67 21.61 0.30 -57.33 16 19 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 20 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 24 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.87 6.89 -2.39 -0.02 1.86 16 32 H 0.08 1.57 7.11 -2.39 -0.02 1.55 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.06 1.23 7.63 -2.39 -0.02 1.21 16 36 H 0.15 3.84 7.46 -2.91 -0.02 3.81 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 39 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 40 H 0.13 4.20 8.06 -2.92 -0.02 4.18 16 Total: -1.00 -73.99 332.06 1.52 -72.46 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.02 Total: 23.27 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 5.14 Total: -42.53 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -5.09 Total: -74.55 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.59 Total: -24.69 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -73.99 1.52 -72.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815127322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.603 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds