Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99739 * 2 1 4 4 C 1.53004 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.74249 * 164.22607 * 4 3 2 6 6 C 1.53513 * 113.47517 * 33.38418 * 4 3 2 7 7 C 1.53512 * 83.57207 * 219.20930 * 6 4 3 8 8 N 1.47473 * 113.47753 * 295.00084 * 4 3 2 9 9 C 1.46895 * 111.00069 * 253.47075 * 8 4 3 10 10 C 1.50698 * 109.47516 * 169.99999 * 9 8 4 11 11 C 1.38301 * 119.93171 * 89.99534 * 10 9 8 12 12 C 1.38100 * 120.06954 * 179.97438 * 11 10 9 13 13 C 1.38880 * 119.93180 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06801 * 179.97438 * 13 12 11 15 15 C 1.34821 * 117.00047 * 5.52931 * 14 13 12 16 16 H 1.07994 * 120.00555 * 354.94530 * 15 14 13 17 17 C 1.38658 * 119.99851 * 174.94789 * 15 14 13 18 18 N 1.31558 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47027 * 90.00420 * 19 17 15 21 21 H 1.48498 * 109.47442 * 330.00675 * 19 17 15 22 22 H 1.48500 * 109.47423 * 210.00317 * 19 17 15 23 23 C 1.38883 * 119.86060 * 0.24761 * 13 12 11 24 24 C 1.38096 * 119.92664 * 359.50043 * 23 13 12 25 25 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47542 * 299.99632 * 1 2 3 27 27 H 1.08996 * 109.47850 * 60.00279 * 1 2 3 28 28 H 1.09000 * 109.47248 * 60.00203 * 3 2 1 29 29 H 1.08998 * 109.47234 * 299.99783 * 3 2 1 30 30 H 1.09002 * 114.16852 * 332.85009 * 6 4 3 31 31 H 1.08994 * 114.17496 * 105.55825 * 6 4 3 32 32 H 1.09006 * 113.47446 * 271.25357 * 7 6 4 33 33 H 1.09004 * 113.47824 * 140.79636 * 7 6 4 34 34 H 1.08999 * 109.47182 * 49.99741 * 9 8 4 35 35 H 1.09005 * 109.47248 * 290.00090 * 9 8 4 36 36 H 1.08002 * 119.96460 * 359.96560 * 11 10 9 37 37 H 1.08005 * 120.03545 * 179.97438 * 12 11 10 38 38 H 0.97005 * 119.99347 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03116 * 179.72180 * 23 13 12 40 40 H 1.08003 * 119.96436 * 180.22542 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 4.0317 2.1160 -0.2740 6 6 4.0519 -0.0354 -0.7759 7 6 5.0644 -0.1216 0.3747 8 7 4.0764 0.5683 1.2249 9 6 4.7257 1.5732 2.0772 10 6 5.0459 0.9638 3.4178 11 6 6.2644 0.3415 3.6196 12 6 6.5611 -0.2175 4.8471 13 6 5.6340 -0.1547 5.8793 14 8 5.9225 -0.7037 7.0869 15 6 7.1675 -1.1931 7.2551 16 1 7.8571 -1.2121 6.4242 17 6 7.5624 -1.6721 8.4949 18 7 8.7774 -2.1491 8.6591 19 14 6.3699 -1.6386 9.9322 20 1 5.5983 -2.9071 9.9649 21 1 5.4358 -0.4951 9.7740 22 1 7.1273 -1.4872 11.2005 23 6 4.4090 0.4659 5.6718 24 6 4.1205 1.0275 4.4436 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5137 -0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.3500 -0.8685 -0.8160 31 1 4.4942 0.2045 -1.7427 32 1 5.9696 0.4604 0.2011 33 1 5.2739 -1.1428 0.6933 34 1 4.0549 2.4213 2.2146 35 1 5.6468 1.9117 1.6027 36 1 6.9847 0.2925 2.8163 37 1 7.5126 -0.7037 5.0039 38 1 9.0536 -2.4845 9.5265 39 1 3.6843 0.5123 6.4712 40 1 3.1695 1.5135 4.2826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815127323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -4.950138 kcal Electronic energy + Delta-G solvation = -20966.921631 eV Core-core repulsion = 17749.088636 eV Total energy + Delta-G solvation = -3217.832996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39617 -39.02665 -37.49744 -36.58499 -32.48562 -31.67231 -30.19893 -29.39069 -28.01341 -26.28394 -25.38134 -23.60803 -23.13030 -21.98449 -20.32434 -19.60056 -17.84058 -17.24742 -16.64712 -16.12605 -16.04290 -15.53703 -14.99168 -14.71633 -14.40939 -13.85113 -13.77870 -13.67170 -13.40994 -12.75898 -12.63498 -12.48331 -12.23937 -12.12931 -11.91119 -11.73465 -11.56025 -11.15848 -11.05636 -10.74465 -10.60281 -10.48456 -10.33157 -10.11363 -9.75444 -9.34566 -8.85061 -8.76430 -8.19404 -7.25773 -6.38747 -4.05129 2.19488 2.24659 3.24826 3.27606 3.42585 3.63598 3.97173 4.26456 4.44752 4.58759 4.72184 4.90684 4.99903 5.02988 5.12519 5.15222 5.17818 5.25458 5.27552 5.40666 5.43673 5.48668 5.53932 5.69340 5.70440 5.77088 5.79615 5.90408 6.17009 6.20873 6.30888 6.45608 6.62555 6.84297 7.00659 7.09305 7.21800 7.31167 7.37155 7.66323 7.83881 8.07648 8.96845 9.60250 10.69085 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.003454 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.650037 B = 8104.778511 C = 8561.527290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.081 3.919 4 C 0.018 3.982 5 H 0.086 0.914 6 C -0.133 4.133 7 C -0.001 4.001 8 N -0.448 5.448 9 C 0.073 3.927 10 C -0.162 4.162 11 C -0.065 4.065 12 C -0.221 4.221 13 C 0.161 3.839 14 O -0.219 6.219 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.260 1.260 22 H -0.283 1.283 23 C -0.193 4.193 24 C -0.058 4.058 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.115 0.885 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 7.662 -18.085 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C 0.004 3.996 4 C -0.092 4.092 5 H 0.104 0.896 6 C -0.171 4.171 7 C -0.130 4.130 8 N -0.171 5.171 9 C -0.054 4.054 10 C -0.163 4.163 11 C -0.083 4.083 12 C -0.240 4.240 13 C 0.108 3.892 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.184 1.184 22 H -0.209 1.209 23 C -0.212 4.212 24 C -0.077 4.077 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.174 7.017 -17.226 22.230 hybrid contribution 0.162 0.713 0.273 0.780 sum -12.012 7.729 -16.953 22.169 Atomic orbital electron populations 1.22701 0.81657 1.02606 0.99521 1.87946 1.18856 1.27241 1.95218 1.22186 0.92847 0.84955 0.99610 1.23513 0.94434 0.98000 0.93249 0.89618 1.23097 0.98630 0.98837 0.96517 1.23771 0.94513 1.01529 0.93174 1.69110 1.20894 1.18446 1.08606 1.21438 0.97349 0.93916 0.92720 1.19042 0.95742 1.07107 0.94459 1.20598 0.95538 0.96248 0.95959 1.21230 1.01824 1.07341 0.93593 1.19125 0.93244 0.91096 0.85689 1.83569 1.33235 1.66697 1.28929 1.20767 0.86762 1.39781 0.99102 0.87685 1.24464 0.96204 0.95579 0.97784 1.69652 1.16993 1.39832 1.25491 0.86177 0.80715 0.79731 0.80260 1.19880 1.18363 1.20854 1.20190 0.96753 1.05897 0.98386 1.20419 0.97458 0.97898 0.91878 0.89777 0.94231 0.94598 0.93116 0.93349 0.87714 0.91296 0.91675 0.89628 0.91169 0.93749 0.87768 0.85065 0.91104 0.86645 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.35 9.15 -35.23 -0.32 -4.67 16 3 C 0.08 0.80 6.28 37.16 0.23 1.04 16 4 C 0.02 0.18 3.59 -71.45 -0.26 -0.08 16 5 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 6 C -0.13 -1.35 7.83 -26.20 -0.21 -1.55 16 7 C 0.00 -0.01 7.71 -7.56 -0.06 -0.07 16 8 N -0.45 -5.98 6.10 -237.98 -1.45 -7.43 16 9 C 0.07 0.99 4.94 -4.98 -0.02 0.97 16 10 C -0.16 -2.80 5.47 -104.58 -0.57 -3.37 16 11 C -0.06 -1.21 9.69 -39.61 -0.38 -1.59 16 12 C -0.22 -4.90 9.17 -39.39 -0.36 -5.26 16 13 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 14 O -0.22 -5.93 8.59 0.07 0.00 -5.93 16 15 C -0.39 -11.16 9.95 30.89 0.31 -10.85 16 16 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 17 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 18 N -0.88 -25.82 13.96 55.48 0.77 -25.04 16 19 Si 0.91 22.04 28.62 -169.99 -4.86 17.18 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 24 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 1.20 6.91 -51.93 -0.36 0.84 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.69 7.42 -51.93 -0.39 0.31 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 35 H 0.04 0.55 7.24 -51.93 -0.38 0.17 16 36 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.13 3.05 5.64 -52.48 -0.30 2.76 16 38 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -31.01 333.25 -8.08 -39.08 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.89 Total: 1.73 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.34 Total: -19.93 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: -0.68 Total: -32.47 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.32 Total: -10.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.01 -8.08 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815127323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.132 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds