Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 113.99739 * 2 1 4 4 C 1.53004 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.74249 * 164.22607 * 4 3 2 6 6 C 1.53513 * 113.47517 * 33.38418 * 4 3 2 7 7 C 1.53512 * 83.57207 * 219.20930 * 6 4 3 8 8 N 1.47473 * 113.47753 * 295.00084 * 4 3 2 9 9 C 1.46895 * 111.00069 * 253.47075 * 8 4 3 10 10 C 1.50698 * 109.47516 * 169.99999 * 9 8 4 11 11 C 1.38301 * 119.93171 * 89.99534 * 10 9 8 12 12 C 1.38100 * 120.06954 * 179.97438 * 11 10 9 13 13 C 1.38880 * 119.93180 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06801 * 179.97438 * 13 12 11 15 15 C 1.34821 * 117.00047 * 5.52931 * 14 13 12 16 16 H 1.07994 * 120.00555 * 354.94530 * 15 14 13 17 17 C 1.38658 * 119.99851 * 174.94789 * 15 14 13 18 18 N 1.31558 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47027 * 90.00420 * 19 17 15 21 21 H 1.48498 * 109.47442 * 330.00675 * 19 17 15 22 22 H 1.48500 * 109.47423 * 210.00317 * 19 17 15 23 23 C 1.38883 * 119.86060 * 0.24761 * 13 12 11 24 24 C 1.38096 * 119.92664 * 359.50043 * 23 13 12 25 25 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47542 * 299.99632 * 1 2 3 27 27 H 1.08996 * 109.47850 * 60.00279 * 1 2 3 28 28 H 1.09000 * 109.47248 * 60.00203 * 3 2 1 29 29 H 1.08998 * 109.47234 * 299.99783 * 3 2 1 30 30 H 1.09002 * 114.16852 * 332.85009 * 6 4 3 31 31 H 1.08994 * 114.17496 * 105.55825 * 6 4 3 32 32 H 1.09006 * 113.47446 * 271.25357 * 7 6 4 33 33 H 1.09004 * 113.47824 * 140.79636 * 7 6 4 34 34 H 1.08999 * 109.47182 * 49.99741 * 9 8 4 35 35 H 1.09005 * 109.47248 * 290.00090 * 9 8 4 36 36 H 1.08002 * 119.96460 * 359.96560 * 11 10 9 37 37 H 1.08005 * 120.03545 * 179.97438 * 12 11 10 38 38 H 0.97005 * 119.99347 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03116 * 179.72180 * 23 13 12 40 40 H 1.08003 * 119.96436 * 180.22542 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 4.0317 2.1160 -0.2740 6 6 4.0519 -0.0354 -0.7759 7 6 5.0644 -0.1216 0.3747 8 7 4.0764 0.5683 1.2249 9 6 4.7257 1.5732 2.0772 10 6 5.0459 0.9638 3.4178 11 6 6.2644 0.3415 3.6196 12 6 6.5611 -0.2175 4.8471 13 6 5.6340 -0.1547 5.8793 14 8 5.9225 -0.7037 7.0869 15 6 7.1675 -1.1931 7.2551 16 1 7.8571 -1.2121 6.4242 17 6 7.5624 -1.6721 8.4949 18 7 8.7774 -2.1491 8.6591 19 14 6.3699 -1.6386 9.9322 20 1 5.5983 -2.9071 9.9649 21 1 5.4358 -0.4951 9.7740 22 1 7.1273 -1.4872 11.2005 23 6 4.4090 0.4659 5.6718 24 6 4.1205 1.0275 4.4436 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5137 -0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.3500 -0.8685 -0.8160 31 1 4.4942 0.2045 -1.7427 32 1 5.9696 0.4604 0.2011 33 1 5.2739 -1.1428 0.6933 34 1 4.0549 2.4213 2.2146 35 1 5.6468 1.9117 1.6027 36 1 6.9847 0.2925 2.8163 37 1 7.5126 -0.7037 5.0039 38 1 9.0536 -2.4845 9.5265 39 1 3.6843 0.5123 6.4712 40 1 3.1695 1.5135 4.2826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815127323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = -26.244882 kcal Electronic energy + Delta-G solvation = -20967.845041 eV Core-core repulsion = 17749.088636 eV Total energy + Delta-G solvation = -3218.756405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37163 -40.69318 -38.53875 -38.01171 -34.51778 -33.02903 -31.81746 -30.20194 -29.32428 -27.31795 -26.93731 -24.88939 -24.01906 -23.58499 -21.87888 -20.41144 -19.81186 -19.10632 -17.48056 -16.94062 -16.92380 -16.66714 -16.45284 -16.05155 -15.89082 -15.62363 -15.29900 -15.07116 -14.47944 -14.33753 -14.17164 -14.01853 -13.35324 -13.24716 -13.15106 -12.91729 -12.67045 -12.51480 -12.31438 -12.12686 -12.01944 -11.97144 -11.60596 -11.27258 -11.15923 -10.90189 -10.47281 -9.80673 -9.70041 -8.97618 -8.50943 -6.23478 0.57294 0.63659 1.30292 1.35097 1.50927 2.27510 2.71040 2.93998 3.00818 3.12497 3.30452 3.65120 3.88907 3.96342 4.08916 4.18792 4.26558 4.35081 4.44058 4.48913 4.53940 4.57038 4.61935 4.63589 4.72747 4.75724 4.80753 4.89429 4.92505 4.98096 5.06662 5.24247 5.33137 5.39522 5.48961 5.58792 5.76108 5.83762 5.90840 6.18572 6.26522 6.44480 6.83420 7.58371 8.60874 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.003454 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.650037 B = 8104.778511 C = 8561.527290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.077 3.923 4 C 0.023 3.977 5 H 0.112 0.888 6 C -0.124 4.124 7 C -0.007 4.007 8 N -0.478 5.478 9 C 0.076 3.924 10 C -0.139 4.139 11 C -0.066 4.066 12 C -0.237 4.237 13 C 0.118 3.882 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.263 1.263 22 H -0.266 1.266 23 C -0.193 4.193 24 C -0.055 4.055 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.127 0.873 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 9.707 -20.207 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C 0.000 4.000 4 C -0.086 4.086 5 H 0.129 0.871 6 C -0.161 4.161 7 C -0.135 4.135 8 N -0.200 5.200 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.085 4.085 12 C -0.256 4.256 13 C 0.069 3.931 14 O -0.154 6.154 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.187 1.187 22 H -0.190 1.190 23 C -0.212 4.212 24 C -0.073 4.073 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.432 9.079 -19.393 25.822 hybrid contribution 0.741 0.198 0.584 0.964 sum -13.691 9.277 -18.809 25.046 Atomic orbital electron populations 1.22819 0.80423 1.03161 1.00424 1.87911 1.20381 1.28486 1.95432 1.22319 0.92511 0.84520 1.00640 1.23640 0.94883 0.98828 0.91200 0.87082 1.22992 0.97622 0.98372 0.97161 1.23848 0.95413 1.00560 0.93720 1.69041 1.21539 1.19144 1.10308 1.21477 0.98937 0.94236 0.90542 1.19612 0.94183 1.03881 0.96304 1.20876 0.96996 0.95562 0.95036 1.21248 1.00924 1.08316 0.95137 1.19653 0.95090 0.93024 0.85293 1.83508 1.32148 1.68995 1.30767 1.20710 0.87519 1.40512 0.98886 0.90296 1.25289 0.97962 0.95294 1.00313 1.69734 1.18667 1.41570 1.26544 0.85206 0.78474 0.79634 0.77322 1.19097 1.18734 1.19042 1.20506 0.95574 1.05131 1.00013 1.20869 0.98950 0.96826 0.90665 0.89544 0.94155 0.92794 0.93381 0.90941 0.89454 0.88869 0.90046 0.91814 0.89107 0.91954 0.85250 0.87561 0.90551 0.85541 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.40 9.15 -148.98 -1.36 -9.76 16 3 C 0.08 1.24 6.28 71.98 0.45 1.69 16 4 C 0.02 0.39 3.59 42.18 0.15 0.54 16 5 H 0.11 1.31 7.91 -2.38 -0.02 1.29 16 6 C -0.12 -2.12 7.83 30.94 0.24 -1.88 16 7 C -0.01 -0.14 7.71 83.57 0.64 0.51 16 8 N -0.48 -11.09 6.10 -906.82 -5.54 -16.63 16 9 C 0.08 1.72 4.94 85.56 0.42 2.15 16 10 C -0.14 -4.39 5.47 -19.84 -0.11 -4.50 16 11 C -0.07 -2.40 9.69 22.25 0.22 -2.19 16 12 C -0.24 -10.93 9.17 22.39 0.21 -10.72 16 13 C 0.12 5.81 6.65 22.58 0.15 5.96 16 14 O -0.25 -13.92 8.59 -22.68 -0.19 -14.12 16 15 C -0.40 -24.33 9.95 67.92 0.68 -23.65 16 16 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 17 C 0.01 0.57 5.49 84.83 0.47 1.04 16 18 N -0.92 -56.36 13.96 21.61 0.30 -56.06 16 19 Si 0.97 46.57 28.62 68.60 1.96 48.53 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.19 -7.83 9.99 22.39 0.22 -7.61 16 24 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.84 6.91 -2.39 -0.02 1.82 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.43 7.42 -2.38 -0.02 1.41 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.75 8.02 -2.39 -0.02 1.73 16 35 H 0.06 1.23 7.24 -2.38 -0.02 1.22 16 36 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 38 H 0.28 15.89 8.31 -92.70 -0.77 15.11 16 39 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 40 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -70.62 333.25 1.40 -69.22 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.02 Total: 17.42 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 5.20 Total: -38.60 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -5.23 Total: -72.69 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.56 Total: -23.88 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.96 Total: 48.53 kcal Total: -70.62 1.40 -69.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815127323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.973 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds