Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 120.00277 * 2 1 4 4 H 1.07996 * 120.00234 * 202.41163 * 3 2 1 5 5 C 1.38952 * 119.99733 * 22.40796 * 3 2 1 6 6 N 1.31411 * 120.00062 * 11.59791 * 5 3 2 7 7 Si 1.86804 * 119.99903 * 191.59404 * 5 3 2 8 8 H 1.48505 * 109.46783 * 60.00249 * 7 5 3 9 9 H 1.48499 * 109.47030 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47055 * 300.00016 * 7 5 3 11 11 C 1.34779 * 120.00135 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00521 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99776 * 359.97438 * 11 2 1 14 14 C 1.52999 * 109.47118 * 179.97438 * 13 11 2 15 15 C 1.53002 * 109.47138 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47281 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.47592 * 54.99879 * 16 15 14 18 18 O 1.42904 * 109.46990 * 295.00050 * 16 15 14 19 19 C 1.50700 * 109.47609 * 175.00098 * 16 15 14 20 20 C 1.38240 * 120.00070 * 84.72356 * 19 16 15 21 21 C 1.38235 * 119.99723 * 179.79175 * 20 19 16 22 22 C 1.38236 * 120.00004 * 0.44085 * 21 20 19 23 23 C 1.38228 * 120.00183 * 359.81362 * 22 21 20 24 24 C 1.38233 * 120.00013 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46902 * 272.15707 * 1 2 3 26 26 H 1.09000 * 109.47188 * 32.15864 * 1 2 3 27 27 H 1.09007 * 109.47371 * 152.15658 * 1 2 3 28 28 H 0.96992 * 119.99912 * 180.02562 * 6 5 3 29 29 H 1.09006 * 109.47208 * 60.00401 * 13 11 2 30 30 H 1.09000 * 109.47574 * 300.00610 * 13 11 2 31 31 H 1.08999 * 109.47654 * 300.00023 * 14 13 11 32 32 H 1.09005 * 109.47063 * 60.00514 * 14 13 11 33 33 H 1.09000 * 109.47202 * 300.00181 * 15 14 13 34 34 H 1.09006 * 109.47336 * 60.00461 * 15 14 13 35 35 H 0.96695 * 113.99890 * 299.99576 * 18 16 15 36 36 H 1.07998 * 119.99761 * 0.02562 * 20 19 16 37 37 H 1.07995 * 119.99541 * 180.27286 * 21 20 19 38 38 H 1.08000 * 119.99799 * 179.83427 * 22 21 20 39 39 H 1.07997 * 120.00028 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00108 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3566 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2707 1.0996 7 14 2.3336 4.0078 0.1645 8 1 2.4815 4.2344 -1.2957 9 1 1.4825 5.0762 0.7470 10 1 3.6718 4.0345 0.8076 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0018 15 6 1.6145 -4.9602 -0.0025 16 6 2.6087 -6.1232 -0.0031 17 1 3.2929 -6.0168 0.8387 18 8 3.3510 -6.1146 -1.2242 19 6 1.8594 -7.4248 0.1201 20 6 1.3414 -8.0337 -1.0078 21 6 0.6578 -9.2299 -0.8953 22 6 0.4843 -9.8126 0.3462 23 6 0.9976 -9.2012 1.4746 24 6 1.6850 -8.0072 1.3616 25 1 -0.3633 0.0387 1.0269 26 1 -0.3633 0.8700 -0.5470 27 1 -0.3634 -0.9087 -0.4800 28 1 -0.0406 3.0790 1.4195 29 1 0.7584 -2.5299 -0.8904 30 1 0.7589 -2.5302 0.8896 31 1 3.0056 -3.5772 -0.8922 32 1 3.0069 -3.5779 0.8878 33 1 0.9883 -5.0186 0.8877 34 1 0.9875 -5.0174 -0.8923 35 1 2.8049 -6.2056 -2.0170 36 1 1.4742 -7.5766 -1.9773 37 1 0.2570 -9.7077 -1.7770 38 1 -0.0521 -10.7458 0.4344 39 1 0.8617 -9.6563 2.4445 40 1 2.0865 -7.5297 2.2432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824863196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = -90.136263 kcal Electronic energy + Delta-G solvation = -20679.697950 eV Core-core repulsion = 17458.171007 eV Total energy + Delta-G solvation = -3221.526943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67243 -40.28894 -38.11725 -36.72094 -34.93686 -33.61159 -32.50252 -31.70952 -29.74497 -28.07822 -26.57061 -25.13790 -23.47081 -22.60761 -21.84481 -20.42299 -18.88427 -18.49928 -17.76350 -17.09840 -16.88294 -16.43272 -16.29251 -16.13054 -15.74181 -15.32964 -14.88768 -14.51665 -14.27066 -14.19500 -13.86593 -13.62690 -13.33068 -13.13249 -12.86391 -12.77434 -12.66376 -12.62761 -12.42282 -12.22959 -12.11999 -11.93121 -11.71718 -11.56140 -11.02751 -10.96022 -10.31286 -9.80296 -9.68494 -9.60980 -8.32652 -5.98354 0.43044 0.51868 1.38325 1.39357 1.50297 2.05902 2.28048 2.85365 3.09135 3.11464 3.57330 3.62838 3.94343 3.98769 4.10004 4.12411 4.19662 4.31318 4.41233 4.46631 4.55821 4.63829 4.68825 4.79010 4.89701 4.94070 4.98079 5.06320 5.09934 5.17677 5.32772 5.40267 5.43828 5.50122 5.58308 5.64228 5.69752 6.10308 6.12666 6.49988 6.80958 7.18030 7.49986 8.06472 8.68787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.002860 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.724043 B = 9789.538539 C =10052.153412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.469 5.469 3 C -0.347 4.347 4 H 0.068 0.932 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.989 3.011 8 H -0.267 1.267 9 H -0.268 1.268 10 H -0.278 1.278 11 C 0.431 3.569 12 O -0.638 6.638 13 C -0.116 4.116 14 C -0.087 4.087 15 C -0.130 4.130 16 C 0.150 3.850 17 H 0.096 0.904 18 O -0.570 6.570 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.273 0.727 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.385 0.615 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -21.698 -2.388 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.188 5.188 3 C -0.476 4.476 4 H 0.086 0.914 5 C -0.206 4.206 6 N -0.537 5.537 7 Si 0.813 3.187 8 H -0.192 1.192 9 H -0.192 1.192 10 H -0.203 1.203 11 C 0.222 3.778 12 O -0.527 6.527 13 C -0.156 4.156 14 C -0.125 4.125 15 C -0.168 4.168 16 C 0.091 3.909 17 H 0.114 0.886 18 O -0.378 6.378 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.222 -21.467 -1.893 22.174 hybrid contribution 0.006 1.139 -0.186 1.154 sum -5.215 -20.328 -2.079 21.089 Atomic orbital electron populations 1.21446 0.79216 1.00206 1.01136 1.43938 1.06894 1.04809 1.63154 1.19583 0.99163 0.86155 1.42664 0.91404 1.26089 0.97058 1.02841 0.94563 1.70061 1.17861 1.30431 1.35300 0.85065 0.77945 0.76843 0.78883 1.19237 1.19230 1.20340 1.21337 0.88060 0.86728 0.81703 1.90467 1.16512 1.88247 1.57433 1.21530 0.98903 0.90671 1.04509 1.21108 0.96961 0.92624 1.01786 1.22194 0.97880 0.92462 1.04221 1.20783 0.92276 0.90091 0.87765 0.88618 1.86624 1.38616 1.96241 1.16297 1.20628 0.99638 0.97389 0.94687 1.21152 0.98081 0.96416 0.98493 1.21443 0.98696 0.95508 0.98632 1.21513 0.99841 1.00788 0.92629 1.21434 0.97777 0.95378 0.99864 1.21239 0.99740 0.96442 0.97159 0.93619 0.93083 0.91005 0.91711 0.87937 0.88695 0.92891 0.93771 0.89907 0.89782 0.76535 0.84697 0.83988 0.84018 0.84262 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.48 8.52 127.77 1.09 6.56 16 2 N -0.47 -25.03 3.02 -658.90 -1.99 -27.01 16 3 C -0.35 -20.50 9.29 84.04 0.78 -19.72 16 4 H 0.07 4.29 7.41 -2.91 -0.02 4.26 16 5 C 0.00 -0.22 5.11 84.93 0.43 0.21 16 6 N -0.90 -48.47 10.62 21.66 0.23 -48.24 16 7 Si 0.99 43.54 29.57 68.60 2.03 45.56 16 8 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 C 0.43 21.79 7.63 87.66 0.67 22.46 16 12 O -0.64 -37.82 15.67 -3.06 -0.05 -37.87 16 13 C -0.12 -4.08 4.22 29.85 0.13 -3.96 16 14 C -0.09 -2.79 4.40 30.59 0.13 -2.66 16 15 C -0.13 -2.91 4.88 30.59 0.15 -2.76 16 16 C 0.15 3.33 3.21 29.85 0.10 3.43 16 17 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 18 O -0.57 -13.70 12.67 -148.98 -1.89 -15.59 16 19 C -0.12 -2.41 5.00 -19.86 -0.10 -2.51 16 20 C -0.12 -2.07 9.33 22.27 0.21 -1.86 16 21 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.36 9.68 22.27 0.22 -2.14 16 25 H 0.05 2.11 7.54 -2.39 -0.02 2.09 16 26 H 0.05 2.41 7.06 -2.39 -0.02 2.39 16 27 H 0.07 2.48 6.36 -2.38 -0.02 2.47 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.10 3.02 7.41 -2.38 -0.02 3.01 16 30 H 0.09 3.00 8.11 -2.39 -0.02 2.98 16 31 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 32 H 0.04 1.60 8.10 -2.38 -0.02 1.58 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.38 6.31 7.40 -74.06 -0.55 5.76 16 36 H 0.14 1.72 6.62 -2.91 -0.02 1.70 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -74.03 332.93 3.29 -70.73 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.49 Total: 20.35 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.47 Total: -7.94 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.76 Total: -75.26 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.94 Total: -53.46 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.03 3.29 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824863196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.401 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds