Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35995 * 116.99587 * 180.02562 * 3 2 1 5 5 C 1.38565 * 120.07439 * 359.72507 * 4 3 2 6 6 C 1.38250 * 119.99582 * 179.70339 * 5 4 3 7 7 C 1.38247 * 120.14678 * 0.59223 * 6 5 4 8 8 C 1.38242 * 120.14942 * 359.68589 * 7 6 5 9 9 C 1.50696 * 120.00159 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47267 * 260.01908 * 9 8 7 11 11 C 1.47477 * 111.00245 * 265.97176 * 10 9 8 12 12 C 1.53514 * 87.93572 * 221.29351 * 11 10 9 13 13 C 1.50701 * 114.34124 * 139.68040 * 12 11 10 14 14 H 1.07995 * 119.99976 * 266.07737 * 13 12 11 15 15 C 1.37878 * 119.99775 * 86.08300 * 13 12 11 16 16 N 1.31512 * 119.99995 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47360 * 90.00052 * 17 15 13 19 19 H 1.48506 * 109.47076 * 210.00101 * 17 15 13 20 20 H 1.48505 * 109.46894 * 329.99448 * 17 15 13 21 21 C 1.47481 * 111.00342 * 170.00032 * 10 9 8 22 22 C 1.38565 * 119.99815 * 0.02562 * 8 7 6 23 23 O 1.35995 * 120.07636 * 180.02562 * 22 8 7 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07994 * 119.99954 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.92507 * 180.29908 * 6 5 4 31 31 H 1.08004 * 119.92623 * 179.70006 * 7 6 5 32 32 H 1.08997 * 109.47455 * 20.02173 * 9 8 7 33 33 H 1.09000 * 109.46916 * 140.02261 * 9 8 7 34 34 H 1.09002 * 113.47737 * 336.06527 * 11 10 9 35 35 H 1.09005 * 113.47867 * 106.53120 * 11 10 9 36 36 H 1.08998 * 114.17326 * 272.37668 * 12 11 10 37 37 H 0.97000 * 120.00091 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.47652 * 253.47215 * 21 10 9 39 39 H 1.09003 * 113.47505 * 23.87523 * 21 10 9 40 40 H 0.96698 * 114.00178 * 269.98298 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 0.0047 6 6 5.5703 0.6107 -0.0021 7 6 6.1003 1.8876 -0.0017 8 6 5.2624 2.9871 -0.0011 9 6 5.8437 4.3774 -0.0001 10 7 5.8109 4.9209 1.3642 11 6 4.5915 5.7204 1.5856 12 6 5.4614 6.7365 2.3390 13 6 5.1168 8.1768 2.0600 14 1 5.6456 8.7192 1.2902 15 6 4.1264 8.8021 2.7875 16 7 3.4823 8.1414 3.7246 17 14 3.6998 10.5876 2.4422 18 1 2.6358 10.6513 1.4083 19 1 3.2165 11.2313 3.6902 20 1 4.9080 11.2997 1.9538 21 6 6.5818 6.1752 1.4523 22 6 3.8880 2.8108 -0.0004 23 8 3.0622 3.8913 -0.0003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7885 -0.5707 0.0096 30 1 6.2282 -0.2458 -0.0029 31 1 7.1714 2.0264 -0.0021 32 1 6.8747 4.3405 -0.3518 33 1 5.2573 5.0168 -0.6601 34 1 4.1589 6.1160 0.6666 35 1 3.8561 5.2244 2.2190 36 1 5.5818 6.5206 3.4005 37 1 2.7853 8.5812 4.2362 38 1 7.5331 6.0645 1.9726 39 1 6.6813 6.6916 0.4975 40 1 2.8236 4.2040 0.8831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826990847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = -23.162176 kcal Electronic energy + Delta-G solvation = -21499.056762 eV Core-core repulsion = 18280.434033 eV Total energy + Delta-G solvation = -3218.622729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42299 -39.00619 -37.64206 -36.23971 -32.93740 -32.05466 -31.45098 -28.88103 -28.36145 -25.64308 -24.83234 -23.86790 -22.52001 -22.22503 -20.54393 -18.71184 -18.15779 -17.45045 -16.62800 -16.22252 -16.15815 -15.44922 -14.80350 -14.55130 -14.32462 -13.92750 -13.83636 -13.71044 -13.15156 -12.96150 -12.78048 -12.12557 -11.97102 -11.84079 -11.70153 -11.60264 -11.22019 -11.15835 -10.94008 -10.81860 -10.62116 -10.29320 -10.16065 -9.75498 -9.32484 -8.95357 -8.52554 -8.36422 -8.00495 -7.97407 -6.05231 -4.09519 1.34733 1.50536 3.14840 3.30174 3.37192 3.39991 3.71832 4.41270 4.49567 4.73231 4.75136 4.88211 4.99573 5.04090 5.15381 5.22405 5.25759 5.39542 5.42331 5.59169 5.61335 5.71526 5.86225 5.91561 6.08899 6.16697 6.28056 6.34212 6.44518 6.50556 6.64458 6.67182 6.74275 6.80188 7.06420 7.18692 7.35507 7.72941 7.90586 8.02708 8.07966 8.37345 8.93574 9.55679 11.04345 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.004380 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.856062 B = 6391.095693 C = 7424.062852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.100 3.900 5 C -0.205 4.205 6 C -0.094 4.094 7 C -0.131 4.131 8 C -0.047 4.047 9 C 0.058 3.942 10 N -0.480 5.480 11 C 0.003 3.997 12 C 0.042 3.958 13 C -0.516 4.516 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.886 5.886 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.005 4.005 22 C 0.089 3.911 23 O -0.486 6.486 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -16.755 -7.289 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.055 3.945 5 C -0.224 4.224 6 C -0.112 4.112 7 C -0.150 4.150 8 C -0.048 4.048 9 C -0.071 4.071 10 N -0.202 5.202 11 C -0.125 4.125 12 C 0.023 3.977 13 C -0.554 4.554 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.133 4.133 22 C 0.042 3.958 23 O -0.298 6.298 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.722 -17.223 -7.346 18.738 hybrid contribution -0.517 1.227 -0.275 1.360 sum -1.239 -15.995 -7.622 17.762 Atomic orbital electron populations 1.21763 0.92820 1.02567 1.03731 1.22758 0.95888 0.82471 1.01061 1.86167 1.18614 1.28577 1.88700 1.19404 0.82672 0.93666 0.98781 1.21043 0.94279 0.97371 1.09707 1.20854 0.94128 0.97148 0.99073 1.20843 0.99666 0.91412 1.03049 1.19996 0.91427 0.96374 0.97034 1.21547 0.99845 0.91836 0.93825 1.68940 1.09046 1.21482 1.20735 1.24185 0.93214 0.94902 1.00239 1.20091 0.89053 0.93393 0.95166 1.21031 1.19258 0.95944 1.19201 0.92417 1.25002 0.96057 0.97857 0.94585 1.69960 1.23650 1.36699 1.22067 0.86622 0.78743 0.85083 0.77726 1.20606 1.21177 1.19840 1.24009 0.99052 0.89883 1.00398 1.17605 0.88563 0.84134 1.05453 1.84820 1.66186 1.44542 1.34207 0.91403 0.91493 0.90575 0.92234 0.92323 0.85627 0.85863 0.85673 0.90913 0.92290 0.91916 0.92300 0.91850 0.92871 0.91943 0.92691 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.31 -4.56 9.92 -34.23 -0.34 -4.90 16 4 C 0.10 1.56 6.70 -39.12 -0.26 1.30 16 5 C -0.20 -2.64 9.04 -39.46 -0.36 -3.00 16 6 C -0.09 -1.16 10.04 -39.57 -0.40 -1.56 16 7 C -0.13 -1.84 9.66 -39.58 -0.38 -2.22 16 8 C -0.05 -0.78 5.48 -104.50 -0.57 -1.35 16 9 C 0.06 1.01 4.70 -4.98 -0.02 0.99 16 10 N -0.48 -9.64 6.32 -246.11 -1.55 -11.20 16 11 C 0.00 0.07 5.33 -7.55 -0.04 0.03 16 12 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 13 C -0.52 -13.95 8.83 -34.44 -0.30 -14.25 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -25.34 13.26 55.43 0.74 -24.60 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.00 -0.10 7.25 -7.55 -0.05 -0.16 16 22 C 0.09 1.54 6.68 -39.12 -0.26 1.28 16 23 O -0.49 -8.95 11.39 -34.23 -0.39 -9.34 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 28 H 0.06 0.52 7.67 -51.93 -0.40 0.13 16 29 H 0.13 1.27 6.30 -52.49 -0.33 0.93 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.53 8.04 -52.48 -0.42 1.11 16 32 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 33 H 0.06 1.10 7.01 -51.93 -0.36 0.74 16 34 H 0.06 1.44 7.09 -51.93 -0.37 1.08 16 35 H 0.06 1.34 7.19 -51.93 -0.37 0.97 16 36 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.12 7.87 -51.93 -0.41 0.72 16 40 H 0.39 6.81 6.88 45.56 0.31 7.13 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -30.00 328.91 -9.36 -39.36 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.24 Total: 6.33 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.51 Total: -16.62 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.82 Total: -35.80 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.73 Total: -14.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.00 -9.36 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826990847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.197 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds