Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35995 * 116.99587 * 180.02562 * 3 2 1 5 5 C 1.38565 * 120.07439 * 359.72507 * 4 3 2 6 6 C 1.38250 * 119.99582 * 179.70339 * 5 4 3 7 7 C 1.38247 * 120.14678 * 0.59223 * 6 5 4 8 8 C 1.38242 * 120.14942 * 359.68589 * 7 6 5 9 9 C 1.50696 * 120.00159 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47267 * 260.01908 * 9 8 7 11 11 C 1.47477 * 111.00245 * 265.97176 * 10 9 8 12 12 C 1.53514 * 87.93572 * 221.29351 * 11 10 9 13 13 C 1.50701 * 114.34124 * 139.68040 * 12 11 10 14 14 H 1.07995 * 119.99976 * 266.07737 * 13 12 11 15 15 C 1.37878 * 119.99775 * 86.08300 * 13 12 11 16 16 N 1.31512 * 119.99995 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47360 * 90.00052 * 17 15 13 19 19 H 1.48506 * 109.47076 * 210.00101 * 17 15 13 20 20 H 1.48505 * 109.46894 * 329.99448 * 17 15 13 21 21 C 1.47481 * 111.00342 * 170.00032 * 10 9 8 22 22 C 1.38565 * 119.99815 * 0.02562 * 8 7 6 23 23 O 1.35995 * 120.07636 * 180.02562 * 22 8 7 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 29 29 H 1.07994 * 119.99954 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.92507 * 180.29908 * 6 5 4 31 31 H 1.08004 * 119.92623 * 179.70006 * 7 6 5 32 32 H 1.08997 * 109.47455 * 20.02173 * 9 8 7 33 33 H 1.09000 * 109.46916 * 140.02261 * 9 8 7 34 34 H 1.09002 * 113.47737 * 336.06527 * 11 10 9 35 35 H 1.09005 * 113.47867 * 106.53120 * 11 10 9 36 36 H 1.08998 * 114.17326 * 272.37668 * 12 11 10 37 37 H 0.97000 * 120.00091 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.47652 * 253.47215 * 21 10 9 39 39 H 1.09003 * 113.47505 * 23.87523 * 21 10 9 40 40 H 0.96698 * 114.00178 * 269.98298 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.2000 0.4277 0.0047 6 6 5.5703 0.6107 -0.0021 7 6 6.1003 1.8876 -0.0017 8 6 5.2624 2.9871 -0.0011 9 6 5.8437 4.3774 -0.0001 10 7 5.8109 4.9209 1.3642 11 6 4.5915 5.7204 1.5856 12 6 5.4614 6.7365 2.3390 13 6 5.1168 8.1768 2.0600 14 1 5.6456 8.7192 1.2902 15 6 4.1264 8.8021 2.7875 16 7 3.4823 8.1414 3.7246 17 14 3.6998 10.5876 2.4422 18 1 2.6358 10.6513 1.4083 19 1 3.2165 11.2313 3.6902 20 1 4.9080 11.2997 1.9538 21 6 6.5818 6.1752 1.4523 22 6 3.8880 2.8108 -0.0004 23 8 3.0622 3.8913 -0.0003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.7885 -0.5707 0.0096 30 1 6.2282 -0.2458 -0.0029 31 1 7.1714 2.0264 -0.0021 32 1 6.8747 4.3405 -0.3518 33 1 5.2573 5.0168 -0.6601 34 1 4.1589 6.1160 0.6666 35 1 3.8561 5.2244 2.2190 36 1 5.5818 6.5206 3.4005 37 1 2.7853 8.5812 4.2362 38 1 7.5331 6.0645 1.9726 39 1 6.6813 6.6916 0.4975 40 1 2.8236 4.2040 0.8831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826990847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = -43.895032 kcal Electronic energy + Delta-G solvation = -21499.955806 eV Core-core repulsion = 18280.434033 eV Total energy + Delta-G solvation = -3219.521773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60959 -40.53972 -38.85675 -37.46210 -34.83882 -33.27229 -32.52809 -29.99145 -29.91057 -27.35232 -26.59906 -25.03059 -23.87697 -23.36218 -21.72765 -20.51800 -19.44952 -18.59008 -18.52723 -17.35493 -17.18075 -16.77724 -16.54712 -16.06764 -15.81708 -15.31506 -15.18960 -15.03653 -14.30913 -14.04780 -13.90360 -13.49074 -13.33399 -13.18253 -13.08189 -12.89988 -12.76596 -12.70919 -12.41162 -12.19457 -11.99719 -11.66896 -11.59908 -11.39104 -11.19849 -10.86764 -10.49740 -9.78313 -9.57291 -9.08573 -8.14939 -6.25783 0.22125 0.40731 1.42771 1.43528 1.53754 2.21308 2.42700 2.60304 3.14415 3.30033 3.44127 3.76964 3.87655 4.03777 4.08065 4.21645 4.24320 4.31121 4.37235 4.39682 4.42569 4.57322 4.66891 4.74331 4.85544 4.87723 4.89312 4.91171 4.95805 5.16710 5.19734 5.26644 5.34662 5.48176 5.59704 5.63372 5.78194 5.85569 6.29315 6.30333 6.35320 6.76703 6.83080 7.42622 8.94723 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.004380 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.856062 B = 6391.095693 C = 7424.062852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.334 6.334 4 C 0.088 3.912 5 C -0.198 4.198 6 C -0.082 4.082 7 C -0.134 4.134 8 C -0.068 4.068 9 C 0.062 3.938 10 N -0.474 5.474 11 C 0.022 3.978 12 C 0.022 3.978 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.017 3.983 16 N -0.921 5.921 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.265 1.265 21 C 0.009 3.991 22 C 0.049 3.951 23 O -0.502 6.502 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -18.733 -8.304 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.249 6.249 4 C 0.042 3.958 5 C -0.217 4.217 6 C -0.100 4.100 7 C -0.153 4.153 8 C -0.069 4.069 9 C -0.066 4.066 10 N -0.196 5.196 11 C -0.107 4.107 12 C 0.002 3.998 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.182 4.182 16 N -0.559 5.559 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.119 4.119 22 C 0.004 3.996 23 O -0.313 6.313 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.176 0.824 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.300 -19.216 -8.378 20.965 hybrid contribution -0.829 1.693 0.027 1.885 sum -0.529 -17.523 -8.351 19.418 Atomic orbital electron populations 1.21810 0.91809 1.04243 1.02819 1.23115 0.96792 0.80740 1.02474 1.86144 1.18516 1.31501 1.88695 1.19570 0.83491 0.93745 0.98985 1.21457 0.94400 0.97954 1.07867 1.21330 0.94419 0.97702 0.96524 1.21147 1.00453 0.91372 1.02341 1.20011 0.91537 0.96449 0.98906 1.21510 1.01042 0.92361 0.91638 1.68878 1.07165 1.20587 1.22995 1.23829 0.93473 0.94386 0.98986 1.20046 0.92267 0.93272 0.94168 1.21368 1.19246 0.97172 1.19121 0.92338 1.25789 0.96000 1.02019 0.94431 1.70082 1.24294 1.38411 1.23126 0.85596 0.78642 0.80112 0.77560 1.20260 1.20858 1.18908 1.23852 0.98526 0.89787 0.99771 1.18010 0.89051 0.84629 1.07940 1.84804 1.66844 1.45639 1.34032 0.92457 0.92283 0.87543 0.90851 0.90620 0.82421 0.81800 0.83599 0.88545 0.94007 0.93002 0.93658 0.95065 0.92867 0.90348 0.92019 0.75773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.04 0.80 5.46 71.98 0.39 1.20 16 3 O -0.33 -9.86 9.92 -79.63 -0.79 -10.65 16 4 C 0.09 2.67 6.70 22.57 0.15 2.82 16 5 C -0.20 -4.50 9.04 22.35 0.20 -4.29 16 6 C -0.08 -1.70 10.04 22.27 0.22 -1.48 16 7 C -0.13 -3.42 9.66 22.27 0.22 -3.20 16 8 C -0.07 -2.21 5.48 -19.79 -0.11 -2.32 16 9 C 0.06 2.17 4.70 85.56 0.40 2.57 16 10 N -0.47 -19.17 6.32 -932.55 -5.89 -25.06 16 11 C 0.02 1.05 5.33 83.57 0.45 1.49 16 12 C 0.02 1.10 3.76 -11.19 -0.04 1.06 16 13 C -0.53 -29.29 8.83 25.60 0.23 -29.07 16 14 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 15 C 0.02 0.95 5.46 84.66 0.46 1.42 16 16 N -0.92 -54.18 13.26 21.45 0.28 -53.89 16 17 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.01 0.38 7.25 83.57 0.61 0.99 16 22 C 0.05 1.74 6.68 22.57 0.15 1.89 16 23 O -0.50 -19.63 11.39 -79.62 -0.91 -20.54 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 28 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 29 H 0.16 2.48 6.30 -2.91 -0.02 2.46 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.15 3.03 8.04 -2.91 -0.02 3.01 16 32 H 0.10 2.85 7.94 -2.39 -0.02 2.83 16 33 H 0.04 1.59 7.01 -2.39 -0.02 1.58 16 34 H 0.05 2.51 7.09 -2.39 -0.02 2.49 16 35 H 0.04 2.20 7.19 -2.38 -0.02 2.18 16 36 H 0.03 1.78 8.11 -2.39 -0.02 1.76 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.06 2.49 7.87 -2.39 -0.02 2.47 16 40 H 0.39 14.71 6.88 -74.06 -0.51 14.20 16 Total: -1.00 -66.69 328.91 -0.68 -67.37 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.53 Total: 25.58 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 4.07 Total: -28.51 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -5.61 Total: -78.95 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.70 Total: -31.19 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.69 -0.68 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826990847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.476 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds