Wall clock time and date at job start Mon Mar 30 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42910 * 109.46902 * 2 1 4 4 N 1.41594 * 113.99788 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00345 * 270.00050 * 4 3 2 6 6 C 1.53003 * 109.47281 * 255.00377 * 5 4 3 7 7 C 1.34782 * 119.99860 * 90.00400 * 4 3 2 8 8 O 1.21281 * 119.99886 * 179.97438 * 7 4 3 9 9 C 1.50701 * 120.00004 * 359.97438 * 7 4 3 10 10 C 1.50697 * 109.47188 * 180.02562 * 9 7 4 11 11 C 1.37639 * 120.12660 * 265.00310 * 10 9 7 12 12 C 1.38614 * 120.24984 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.49857 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.25327 * 0.02763 * 13 12 11 15 15 C 1.40698 * 120.12713 * 84.72798 * 10 9 7 16 16 C 1.41395 * 120.24375 * 359.97438 * 15 10 9 17 17 H 1.07989 * 120.00385 * 329.70438 * 16 15 10 18 18 C 1.39943 * 119.99402 * 149.69881 * 16 15 10 19 19 N 1.30822 * 119.99812 * 162.02283 * 18 16 15 20 20 Si 1.86803 * 120.00485 * 342.02101 * 18 16 15 21 21 H 1.48502 * 109.46988 * 95.40237 * 20 18 16 22 22 H 1.48498 * 109.47138 * 215.40020 * 20 18 16 23 23 H 1.48497 * 109.46831 * 335.40213 * 20 18 16 24 24 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47731 * 299.99755 * 1 2 3 26 26 H 1.08998 * 109.47596 * 60.00064 * 1 2 3 27 27 H 1.08992 * 109.47488 * 240.00190 * 2 1 3 28 28 H 1.08999 * 109.47160 * 119.99636 * 2 1 3 29 29 H 1.08996 * 109.47028 * 14.99829 * 5 4 3 30 30 H 1.09000 * 109.47555 * 135.00720 * 5 4 3 31 31 H 1.09002 * 109.47009 * 299.99945 * 6 5 4 32 32 H 1.09001 * 109.47283 * 59.99802 * 6 5 4 33 33 H 1.08992 * 109.47487 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46845 * 300.00157 * 9 7 4 35 35 H 1.09000 * 109.46853 * 60.00343 * 9 7 4 36 36 H 1.08001 * 119.87948 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.75239 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.87518 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.13507 * 179.97438 * 14 13 12 40 40 H 0.97003 * 120.00475 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4178 1.4592 0.0006 5 6 4.1475 1.5172 1.2695 6 6 4.6139 2.9519 1.5246 7 6 4.0900 1.5123 -1.1664 8 8 5.2990 1.6085 -1.1659 9 6 3.3394 1.4521 -2.4718 10 6 4.3161 1.5288 -3.6169 11 6 4.5917 2.7400 -4.2099 12 6 5.4900 2.8136 -5.2629 13 6 6.1204 1.6709 -5.7313 14 6 5.8593 0.4492 -5.1544 15 6 4.9542 0.3636 -4.0801 16 6 4.6837 -0.8852 -3.4745 17 1 4.4190 -0.9321 -2.4286 18 6 4.7590 -2.0603 -4.2306 19 7 4.8606 -3.2186 -3.6309 20 14 4.7144 -1.9753 -6.0962 21 1 6.1021 -1.9768 -6.6250 22 1 3.9808 -3.1518 -6.6279 23 1 4.0251 -0.7297 -6.5185 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.4923 1.1987 2.0803 30 1 5.0134 0.8570 1.2213 31 1 5.2690 3.2706 0.7138 32 1 3.7480 3.6123 1.5728 33 1 5.1564 2.9952 2.4689 34 1 2.7854 0.5152 -2.5294 35 1 2.6442 2.2896 -2.5301 36 1 4.1062 3.6364 -3.8534 37 1 5.7000 3.7680 -5.7225 38 1 6.8189 1.7399 -6.5522 39 1 6.3511 -0.4396 -5.5211 40 1 4.9132 -4.0332 -4.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831467393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:53 Heat of formation + Delta-G solvation = -20.469316 kcal Electronic energy + Delta-G solvation = -22142.445320 eV Core-core repulsion = 18923.939363 eV Total energy + Delta-G solvation = -3218.505958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.52725 -37.81527 -36.97723 -33.98673 -33.56702 -31.94974 -31.10021 -30.29308 -29.12189 -26.81974 -24.87766 -23.24127 -22.71909 -21.33547 -20.17639 -19.44794 -17.35590 -17.16590 -16.58159 -15.58824 -15.48390 -14.92416 -14.60364 -14.26607 -14.01120 -13.67120 -13.65472 -13.27887 -12.73945 -12.70654 -12.45939 -12.14699 -12.09260 -11.94286 -11.85283 -11.49703 -11.35536 -11.18185 -10.85800 -10.78495 -10.70913 -10.22240 -10.14813 -9.67893 -9.54088 -9.19492 -9.09924 -8.66252 -7.56348 -7.47478 -6.91963 -4.45820 2.14728 2.63196 2.75449 3.13958 3.17549 3.22683 3.34331 4.00679 4.34370 4.56972 5.04939 5.12122 5.16760 5.34659 5.36161 5.46250 5.50207 5.62683 5.74227 5.84288 5.87862 5.95726 5.99685 6.07014 6.12818 6.14949 6.24205 6.33332 6.37550 6.61978 6.75972 6.80170 6.98319 7.23517 7.45948 7.69540 7.76897 7.85184 7.93704 8.17563 8.37185 8.66008 8.71282 8.84595 10.10298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006817 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.831342 B = 4106.281885 C = 5006.403657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.017 3.983 3 O -0.145 6.145 4 N -0.488 5.488 5 C 0.116 3.884 6 C -0.166 4.166 7 C 0.529 3.471 8 O -0.501 6.501 9 C -0.068 4.068 10 C -0.168 4.168 11 C -0.069 4.069 12 C -0.240 4.240 13 C -0.080 4.080 14 C -0.233 4.233 15 C 0.109 3.891 16 C -0.445 4.445 17 H 0.086 0.914 18 C 0.085 3.915 19 N -0.811 5.811 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.243 1.243 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 5.172 6.567 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 O -0.151 6.151 4 N -0.269 5.269 5 C -0.004 4.004 6 C -0.224 4.224 7 C 0.320 3.680 8 O -0.374 6.374 9 C -0.107 4.107 10 C -0.170 4.170 11 C -0.087 4.087 12 C -0.260 4.260 13 C -0.098 4.098 14 C -0.252 4.252 15 C 0.106 3.894 16 C -0.473 4.473 17 H 0.104 0.896 18 C -0.133 4.133 19 N -0.436 5.436 20 Si 0.736 3.264 21 H -0.197 1.197 22 H -0.220 1.220 23 H -0.167 1.167 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.415 5.099 6.611 10.529 hybrid contribution -0.014 -0.532 -0.623 0.819 sum -6.428 4.567 5.988 9.902 Atomic orbital electron populations 1.21690 0.92576 1.02841 1.03079 1.23118 0.95611 0.85401 1.01997 1.90576 1.02451 1.25230 1.96848 1.50410 0.94533 1.75463 1.06507 1.21570 0.95922 0.98260 0.84659 1.22106 1.01727 0.96376 1.02175 1.21331 0.87799 0.74448 0.84443 1.90731 1.13344 1.47763 1.85538 1.20249 0.97381 1.03703 0.89376 1.19127 1.03082 0.94007 1.00762 1.20454 0.97042 0.95465 0.95738 1.20338 1.05673 0.96813 1.03134 1.20600 0.97993 0.93278 0.97977 1.20992 1.04432 0.96367 1.03370 1.17493 0.88884 0.92837 0.90208 1.19362 1.40701 0.88761 0.98512 0.89619 1.26142 0.90730 0.94747 1.01718 1.69703 1.35230 0.99394 1.39246 0.86346 0.79239 0.78650 0.82160 1.19738 1.21986 1.16660 0.90522 0.91980 0.91405 0.91379 0.92725 0.90234 0.90149 0.91405 0.92417 0.91668 0.88453 0.89841 0.88999 0.88959 0.88985 0.88325 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 10.28 37.15 0.38 -1.08 16 2 C 0.02 0.22 7.09 37.15 0.26 0.49 16 3 O -0.15 -2.23 10.48 -11.47 -0.12 -2.35 16 4 N -0.49 -8.38 3.02 -60.30 -0.18 -8.56 16 5 C 0.12 1.68 6.38 -4.04 -0.03 1.65 16 6 C -0.17 -2.17 10.04 37.16 0.37 -1.80 16 7 C 0.53 10.96 7.15 -10.98 -0.08 10.88 16 8 O -0.50 -12.09 15.11 5.56 0.08 -12.00 16 9 C -0.07 -1.38 4.50 -29.04 -0.13 -1.51 16 10 C -0.17 -3.97 4.43 -103.91 -0.46 -4.43 16 11 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 12 C -0.24 -5.24 10.05 -39.29 -0.39 -5.64 16 13 C -0.08 -1.83 10.02 -39.66 -0.40 -2.22 16 14 C -0.23 -5.85 7.17 -38.87 -0.28 -6.13 16 15 C 0.11 2.82 5.10 -106.82 -0.54 2.28 16 16 C -0.44 -12.03 8.56 -37.74 -0.32 -12.35 16 17 H 0.09 2.44 6.99 -52.49 -0.37 2.07 16 18 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 19 N -0.81 -21.61 13.93 55.55 0.77 -20.84 16 20 Si 0.91 20.98 24.52 -169.99 -4.17 16.81 16 21 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.24 -5.73 6.85 56.52 0.39 -5.34 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 31 H 0.07 1.06 7.34 -51.93 -0.38 0.68 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 2.00 6.13 -51.93 -0.32 1.68 16 35 H 0.08 1.49 8.05 -51.93 -0.42 1.08 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.10 2.47 4.74 -52.49 -0.25 2.22 16 40 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -30.27 331.31 -6.62 -36.90 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.91 Total: 4.68 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.09 Total: -19.62 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.59 Total: -29.41 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.04 Total: -14.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.27 -6.62 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831467393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.426 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds