Wall clock time and date at job start Mon Mar 30 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42910 * 109.46902 * 2 1 4 4 N 1.41594 * 113.99788 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00345 * 270.00050 * 4 3 2 6 6 C 1.53003 * 109.47281 * 255.00377 * 5 4 3 7 7 C 1.34782 * 119.99860 * 90.00400 * 4 3 2 8 8 O 1.21281 * 119.99886 * 179.97438 * 7 4 3 9 9 C 1.50701 * 120.00004 * 359.97438 * 7 4 3 10 10 C 1.50697 * 109.47188 * 180.02562 * 9 7 4 11 11 C 1.37639 * 120.12660 * 265.00310 * 10 9 7 12 12 C 1.38614 * 120.24984 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.49857 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.25327 * 0.02763 * 13 12 11 15 15 C 1.40698 * 120.12713 * 84.72798 * 10 9 7 16 16 C 1.41395 * 120.24375 * 359.97438 * 15 10 9 17 17 H 1.07989 * 120.00385 * 329.70438 * 16 15 10 18 18 C 1.39943 * 119.99402 * 149.69881 * 16 15 10 19 19 N 1.30822 * 119.99812 * 162.02283 * 18 16 15 20 20 Si 1.86803 * 120.00485 * 342.02101 * 18 16 15 21 21 H 1.48502 * 109.46988 * 95.40237 * 20 18 16 22 22 H 1.48498 * 109.47138 * 215.40020 * 20 18 16 23 23 H 1.48497 * 109.46831 * 335.40213 * 20 18 16 24 24 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47731 * 299.99755 * 1 2 3 26 26 H 1.08998 * 109.47596 * 60.00064 * 1 2 3 27 27 H 1.08992 * 109.47488 * 240.00190 * 2 1 3 28 28 H 1.08999 * 109.47160 * 119.99636 * 2 1 3 29 29 H 1.08996 * 109.47028 * 14.99829 * 5 4 3 30 30 H 1.09000 * 109.47555 * 135.00720 * 5 4 3 31 31 H 1.09002 * 109.47009 * 299.99945 * 6 5 4 32 32 H 1.09001 * 109.47283 * 59.99802 * 6 5 4 33 33 H 1.08992 * 109.47487 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46845 * 300.00157 * 9 7 4 35 35 H 1.09000 * 109.46853 * 60.00343 * 9 7 4 36 36 H 1.08001 * 119.87948 * 359.97438 * 11 10 9 37 37 H 1.07994 * 119.75239 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.87518 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.13507 * 179.97438 * 14 13 12 40 40 H 0.97003 * 120.00475 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4178 1.4592 0.0006 5 6 4.1475 1.5172 1.2695 6 6 4.6139 2.9519 1.5246 7 6 4.0900 1.5123 -1.1664 8 8 5.2990 1.6085 -1.1659 9 6 3.3394 1.4521 -2.4718 10 6 4.3161 1.5288 -3.6169 11 6 4.5917 2.7400 -4.2099 12 6 5.4900 2.8136 -5.2629 13 6 6.1204 1.6709 -5.7313 14 6 5.8593 0.4492 -5.1544 15 6 4.9542 0.3636 -4.0801 16 6 4.6837 -0.8852 -3.4745 17 1 4.4190 -0.9321 -2.4286 18 6 4.7590 -2.0603 -4.2306 19 7 4.8606 -3.2186 -3.6309 20 14 4.7144 -1.9753 -6.0962 21 1 6.1021 -1.9768 -6.6250 22 1 3.9808 -3.1518 -6.6279 23 1 4.0251 -0.7297 -6.5185 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.4923 1.1987 2.0803 30 1 5.0134 0.8570 1.2213 31 1 5.2690 3.2706 0.7138 32 1 3.7480 3.6123 1.5728 33 1 5.1564 2.9952 2.4689 34 1 2.7854 0.5152 -2.5294 35 1 2.6442 2.2896 -2.5301 36 1 4.1062 3.6364 -3.8534 37 1 5.7000 3.7680 -5.7225 38 1 6.8189 1.7399 -6.5522 39 1 6.3511 -0.4396 -5.5211 40 1 4.9132 -4.0332 -4.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831467393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:52 Heat of formation + Delta-G solvation = -38.012184 kcal Electronic energy + Delta-G solvation = -22143.206036 eV Core-core repulsion = 18923.939363 eV Total energy + Delta-G solvation = -3219.266674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09417 -39.51254 -38.43058 -35.49968 -35.25440 -33.63007 -32.27337 -32.12824 -30.46518 -28.44987 -26.73526 -24.48125 -23.87102 -23.17785 -21.75613 -21.03586 -19.27221 -18.68382 -18.02180 -17.35108 -16.91906 -16.28641 -16.04804 -15.94865 -15.57971 -15.45008 -14.96331 -14.82773 -14.55275 -13.93182 -13.77677 -13.70883 -13.50956 -13.16532 -13.11834 -12.96383 -12.81265 -12.69843 -12.53768 -12.47621 -12.06367 -12.00401 -11.55565 -11.39759 -11.38717 -10.97797 -10.77192 -10.07201 -9.41214 -9.30979 -8.87644 -6.46215 0.71955 0.87861 0.95769 1.26743 1.39884 1.48896 1.58327 2.13498 2.62071 3.02767 3.58336 4.00699 4.03307 4.08593 4.17719 4.21949 4.27468 4.33784 4.38539 4.43387 4.45910 4.55138 4.69674 4.72330 4.87973 4.92019 4.95041 4.96931 5.02699 5.15079 5.22511 5.26592 5.36273 5.46646 5.65832 5.85608 5.93656 6.04034 6.27711 6.41149 6.46300 6.79022 6.89151 7.10803 8.20262 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015571 B = 0.006817 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.831342 B = 4106.281885 C = 5006.403657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.013 3.987 3 O -0.142 6.142 4 N -0.486 5.486 5 C 0.110 3.890 6 C -0.157 4.157 7 C 0.527 3.473 8 O -0.546 6.546 9 C -0.066 4.066 10 C -0.175 4.175 11 C -0.079 4.079 12 C -0.227 4.227 13 C -0.089 4.089 14 C -0.254 4.254 15 C 0.083 3.917 16 C -0.469 4.469 17 H 0.053 0.947 18 C 0.049 3.951 19 N -0.851 5.851 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.251 1.251 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 7.128 6.327 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 O -0.148 6.148 4 N -0.264 5.264 5 C -0.010 4.010 6 C -0.215 4.215 7 C 0.318 3.682 8 O -0.423 6.423 9 C -0.105 4.105 10 C -0.177 4.177 11 C -0.097 4.097 12 C -0.246 4.246 13 C -0.107 4.107 14 C -0.273 4.273 15 C 0.080 3.920 16 C -0.499 4.499 17 H 0.071 0.929 18 C -0.165 4.165 19 N -0.477 5.477 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.175 1.175 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.531 7.055 6.401 12.144 hybrid contribution 0.286 -0.971 -0.471 1.116 sum -7.246 6.084 5.930 11.166 Atomic orbital electron populations 1.21706 0.89583 1.04182 1.03924 1.23290 0.97856 0.84234 1.01085 1.90571 1.00848 1.26515 1.96823 1.50287 0.95689 1.73930 1.06517 1.21830 0.95865 0.99139 0.84146 1.22037 1.01761 0.95239 1.02429 1.21237 0.87306 0.74170 0.85495 1.90698 1.14992 1.50109 1.86486 1.20239 0.97119 1.04305 0.88831 1.19523 1.02935 0.94031 1.01190 1.20892 0.97211 0.95954 0.95646 1.20869 1.03724 0.98053 1.01951 1.20994 0.98469 0.92576 0.98690 1.21140 1.04805 0.97478 1.03892 1.17726 0.89845 0.93224 0.91175 1.19267 1.43069 0.90213 0.97355 0.92895 1.26762 0.90339 0.94237 1.05164 1.69731 1.37273 1.00045 1.40683 0.85534 0.79390 0.78604 0.77844 1.19194 1.20325 1.17489 0.88949 0.90209 0.91439 0.94241 0.91769 0.86922 0.91869 0.94422 0.91387 0.88758 0.89373 0.87103 0.85846 0.85217 0.85821 0.88973 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.01 0.35 7.09 71.98 0.51 0.86 16 3 O -0.14 -4.21 10.48 -38.77 -0.41 -4.62 16 4 N -0.49 -16.63 3.02 -463.06 -1.40 -18.03 16 5 C 0.11 3.09 6.38 86.38 0.55 3.64 16 6 C -0.16 -3.91 10.04 71.98 0.72 -3.19 16 7 C 0.53 22.31 7.15 87.66 0.63 22.94 16 8 O -0.55 -27.30 15.11 -3.03 -0.05 -27.34 16 9 C -0.07 -2.71 4.50 29.10 0.13 -2.58 16 10 C -0.18 -8.26 4.43 -19.41 -0.09 -8.35 16 11 C -0.08 -3.31 9.66 22.22 0.21 -3.10 16 12 C -0.23 -9.15 10.05 22.46 0.23 -8.93 16 13 C -0.09 -3.86 10.02 22.22 0.22 -3.64 16 14 C -0.25 -12.74 7.17 22.73 0.16 -12.58 16 15 C 0.08 4.39 5.10 -21.29 -0.11 4.28 16 16 C -0.47 -26.69 8.56 23.46 0.20 -26.49 16 17 H 0.05 3.24 6.99 -2.92 -0.02 3.22 16 18 C 0.05 2.68 5.41 85.26 0.46 3.14 16 19 N -0.85 -47.24 13.93 21.83 0.30 -46.94 16 20 Si 0.96 43.92 24.52 68.60 1.68 45.61 16 21 H -0.27 -11.78 6.71 99.48 0.67 -11.11 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.25 -11.64 6.85 99.48 0.68 -10.96 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.27 7.13 -2.39 -0.02 1.26 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.01 7.90 -2.39 -0.02 1.99 16 31 H 0.04 1.17 7.34 -2.39 -0.02 1.15 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 3.79 6.13 -2.39 -0.01 3.78 16 35 H 0.11 3.84 8.05 -2.39 -0.02 3.82 16 36 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.09 4.64 4.74 -2.91 -0.01 4.63 16 40 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 Total: -1.00 -68.07 331.31 5.67 -62.40 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.96 Total: 24.69 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.58 Total: -35.77 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.09 Total: -64.97 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.45 Total: -31.96 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.68 Total: 45.61 kcal Total: -68.07 5.67 -62.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831467393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.388 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds