Wall clock time and date at job start Mon Mar 30 2020 01:48:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46905 * 110.99924 * 2 1
4 4 C 1.46902 * 110.99715 * 123.94663 * 2 1 3
5 5 C 1.50698 * 109.47046 * 170.00297 * 4 2 1
6 6 C 1.38395 * 119.92643 * 270.25179 * 5 4 2
7 7 C 1.38342 * 120.30516 * 180.29977 * 6 5 4
8 8 C 1.37974 * 120.14875 * 359.44610 * 7 6 5
9 9 C 1.39608 * 119.84372 * 0.27850 * 8 7 6
10 10 C 1.47731 * 120.14574 * 179.97438 * 9 8 7
11 11 O 1.21470 * 119.99879 * 179.97438 * 10 9 8
12 12 O 1.34713 * 119.99818 * 359.97438 * 10 9 8
13 13 C 1.45197 * 116.99587 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.47145 * 179.97438 * 13 12 10
15 15 C 1.50694 * 109.47359 * 179.97438 * 14 13 12
16 16 H 1.08005 * 120.00040 * 0.02562 * 15 14 13
17 17 C 1.37882 * 120.00384 * 180.02562 * 15 14 13
18 18 N 1.31513 * 119.99527 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 120.00453 * 180.02562 * 17 15 14
20 20 H 1.48507 * 109.46783 * 359.97438 * 19 17 15
21 21 H 1.48495 * 109.47284 * 120.00032 * 19 17 15
22 22 H 1.48507 * 109.46954 * 240.00269 * 19 17 15
23 23 C 1.37925 * 119.92591 * 90.00108 * 5 4 2
24 24 H 1.08992 * 109.47185 * 296.05159 * 1 2 3
25 25 H 1.09002 * 109.47015 * 56.05398 * 1 2 3
26 26 H 1.09001 * 109.46640 * 176.04955 * 1 2 3
27 27 H 1.08996 * 109.46523 * 183.95271 * 3 2 1
28 28 H 1.09002 * 109.46495 * 303.94566 * 3 2 1
29 29 H 1.09000 * 109.47363 * 63.94867 * 3 2 1
30 30 H 1.08999 * 109.46890 * 50.00284 * 4 2 1
31 31 H 1.08997 * 109.47613 * 290.00133 * 4 2 1
32 32 H 1.08000 * 119.84625 * 0.02862 * 6 5 4
33 33 H 1.08002 * 119.92904 * 179.72812 * 7 6 5
34 34 H 1.07999 * 120.07593 * 180.25535 * 8 7 6
35 35 H 1.09006 * 109.47496 * 300.00229 * 13 12 10
36 36 H 1.09003 * 109.47152 * 60.00102 * 13 12 10
37 37 H 1.08998 * 109.47421 * 300.00837 * 14 13 12
38 38 H 1.09003 * 109.46858 * 60.00110 * 14 13 12
39 39 H 0.97002 * 120.00421 * 180.02562 * 18 17 15
40 40 H 1.07997 * 120.07375 * 0.02562 * 23 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.9954 -0.7659 1.1377
5 6 3.4817 -0.9524 0.9731
6 6 3.9681 -2.0567 0.2954
7 6 5.3312 -2.2388 0.1451
8 6 6.2151 -1.3134 0.6607
9 6 5.7311 -0.1941 1.3405
10 6 6.6715 0.8007 1.8958
11 8 6.2474 1.7738 2.4864
12 8 7.9993 0.6287 1.7472
13 6 8.8637 1.6462 2.3180
14 6 10.3255 1.2815 2.0515
15 6 11.2227 2.3378 2.6433
16 1 10.7932 3.1844 3.1584
17 6 12.5918 2.2236 2.5273
18 7 13.1148 1.1930 1.8996
19 14 13.7040 3.5326 3.2614
20 1 12.8744 4.5803 3.9093
21 1 14.5977 2.9127 4.2724
22 1 14.5237 4.1459 2.1856
23 6 4.3541 -0.0194 1.4936
24 1 -0.3633 0.4513 0.9232
25 1 -0.3633 0.5739 -0.8525
26 1 -0.3632 -1.0253 -0.0708
27 1 3.0828 1.3432 -0.0708
28 1 1.5899 1.9162 -0.8526
29 1 1.7043 1.8725 0.9232
30 1 1.5089 -1.7405 1.1758
31 1 1.7975 -0.2246 2.0629
32 1 3.2805 -2.7818 -0.1141
33 1 5.7043 -3.1051 -0.3811
34 1 7.2789 -1.4546 0.5391
35 1 8.6404 2.6105 1.8615
36 1 8.6945 1.7053 3.3932
37 1 10.5486 0.3173 2.5082
38 1 10.4950 1.2221 0.9764
39 1 14.0780 1.1123 1.8182
40 1 3.9731 0.8437 2.0191
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000835265030.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:48:41
Heat of formation + Delta-G solvation = -66.820825 kcal
Electronic energy + Delta-G solvation = -20488.654592 eV
Core-core repulsion = 17268.138682 eV
Total energy + Delta-G solvation = -3220.515910 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.146 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.31573 -39.13360 -37.19857 -36.03698 -33.36323 -32.14301 -31.31753 -30.16883
-27.87157 -27.07182 -25.41444 -23.91055 -22.73601 -21.62410 -20.98092 -20.15972
-17.53506 -16.82109 -16.13276 -15.98994 -15.94000 -15.72571 -15.58806 -15.15442
-14.62140 -14.50557 -14.04456 -13.43971 -13.10547 -12.77188 -12.66447 -12.57458
-12.36960 -12.29916 -11.99624 -11.86676 -11.58373 -11.24324 -11.16420 -11.00267
-10.77226 -10.69429 -10.25627 -9.65714 -9.63231 -9.28925 -9.09584 -9.02513
-8.63900 -8.44982 -6.10910 -4.15065 0.73360 1.18830 2.74586 3.13444
3.27424 3.35015 3.40330 3.57868 3.94598 4.38798 4.45395 4.66319
4.85263 4.86046 4.97415 5.02250 5.08259 5.19504 5.24354 5.25841
5.31794 5.40188 5.47303 5.51157 5.73152 5.74753 5.83201 6.08569
6.09305 6.25773 6.27982 6.34209 6.62841 6.63537 6.66743 6.75921
6.95368 7.55536 7.61936 7.86358 8.17520 8.25619 8.90644 9.49351
11.00692
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.037570 B = 0.002882 C = 0.002732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.091700 B = 9714.145808 C =10246.583101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.543 5.543
3 C 0.017 3.983
4 C 0.095 3.905
5 C -0.098 4.098
6 C -0.069 4.069
7 C -0.134 4.134
8 C -0.059 4.059
9 C -0.118 4.118
10 C 0.500 3.500
11 O -0.517 6.517
12 O -0.352 6.352
13 C 0.076 3.924
14 C 0.024 3.976
15 C -0.525 4.525
16 H 0.060 0.940
17 C 0.060 3.940
18 N -0.890 5.890
19 Si 0.899 3.101
20 H -0.271 1.271
21 H -0.282 1.282
22 H -0.282 1.282
23 C -0.053 4.053
24 H 0.026 0.974
25 H 0.069 0.931
26 H 0.068 0.932
27 H 0.074 0.926
28 H 0.068 0.932
29 H 0.028 0.972
30 H 0.085 0.915
31 H 0.046 0.954
32 H 0.127 0.873
33 H 0.131 0.869
34 H 0.143 0.857
35 H 0.059 0.941
36 H 0.059 0.941
37 H 0.029 0.971
38 H 0.029 0.971
39 H 0.263 0.737
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.518 -7.033 -4.318 24.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.266 5.266
3 C -0.131 4.131
4 C -0.032 4.032
5 C -0.098 4.098
6 C -0.087 4.087
7 C -0.152 4.152
8 C -0.077 4.077
9 C -0.119 4.119
10 C 0.345 3.655
11 O -0.408 6.408
12 O -0.268 6.268
13 C 0.003 3.997
14 C -0.013 4.013
15 C -0.564 4.564
16 H 0.078 0.922
17 C -0.142 4.142
18 N -0.528 5.528
19 Si 0.727 3.273
20 H -0.196 1.196
21 H -0.208 1.208
22 H -0.208 1.208
23 C -0.072 4.072
24 H 0.044 0.956
25 H 0.088 0.912
26 H 0.087 0.913
27 H 0.093 0.907
28 H 0.087 0.913
29 H 0.046 0.954
30 H 0.104 0.896
31 H 0.064 0.936
32 H 0.145 0.855
33 H 0.149 0.851
34 H 0.160 0.840
35 H 0.078 0.922
36 H 0.078 0.922
37 H 0.047 0.953
38 H 0.047 0.953
39 H 0.072 0.928
40 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -23.277 -7.025 -4.617 24.749
hybrid contribution 0.478 1.237 1.169 1.768
sum -22.799 -5.788 -3.449 23.774
Atomic orbital electron populations
1.22395 0.87082 1.02281 1.00661 1.62021 1.07703 1.14373 1.42548
1.22509 1.01782 0.88233 1.00557 1.21046 0.91108 0.99068 0.91992
1.19570 0.94746 0.95490 1.00017 1.21225 0.95475 0.96561 0.95465
1.21179 0.93040 0.99859 1.01078 1.21631 1.01293 0.91736 0.93059
1.19247 0.92414 0.96313 1.03954 1.21143 0.82913 0.84464 0.76991
1.90783 1.79353 1.30583 1.40032 1.86568 1.16184 1.51925 1.72084
1.23676 0.90687 0.88214 0.97093 1.19177 0.85374 0.98152 0.98566
1.21016 0.91008 1.07729 1.36611 0.92199 1.24987 0.98137 0.95909
0.95159 1.69982 1.11884 1.29063 1.41914 0.86416 0.80479 0.81505
0.78919 1.19591 1.20821 1.20821 1.21136 0.91219 0.98154 0.96649
0.95588 0.91200 0.91290 0.90686 0.91282 0.95374 0.89634 0.93622
0.85508 0.85059 0.83963 0.92220 0.92236 0.95312 0.95304 0.92757
0.84985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.57 60.07 0.57 0.73 16
2 N -0.54 -4.84 5.01 -252.72 -1.27 -6.11 16
3 C 0.02 0.16 9.14 60.07 0.55 0.71 16
4 C 0.10 0.82 5.11 -4.98 -0.03 0.79 16
5 C -0.10 -1.03 4.88 -104.68 -0.51 -1.54 16
6 C -0.07 -0.66 9.69 -39.49 -0.38 -1.04 16
7 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16
8 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16
9 C -0.12 -1.76 5.87 -104.98 -0.62 -2.38 16
10 C 0.50 9.36 7.90 34.61 0.27 9.64 16
11 O -0.52 -10.70 16.14 -19.24 -0.31 -11.01 16
12 O -0.35 -7.23 9.47 -40.53 -0.38 -7.62 16
13 C 0.08 1.72 5.41 37.16 0.20 1.92 16
14 C 0.02 0.64 5.35 -27.89 -0.15 0.49 16
15 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16
16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16
17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16
18 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16
19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16
20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
23 C -0.05 -0.68 7.50 -39.17 -0.29 -0.97 16
24 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16
25 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16
26 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16
27 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16
28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16
29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.09 0.60 8.01 -51.93 -0.42 0.18 16
31 H 0.05 0.39 8.06 -51.93 -0.42 -0.03 16
32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16
34 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16
35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16
37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
40 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16
LS Contribution 342.25 15.07 5.16 5.16
Total: -1.00 -31.61 342.25 -8.80 -40.41
By element:
Atomic # 1 Polarization: 2.64 SS G_CDS: -6.14 Total: -3.50 kcal
Atomic # 6 Polarization: -6.55 SS G_CDS: -1.57 Total: -8.12 kcal
Atomic # 7 Polarization: -31.26 SS G_CDS: -0.53 Total: -31.79 kcal
Atomic # 8 Polarization: -17.93 SS G_CDS: -0.69 Total: -18.62 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -31.61 -8.80 -40.41 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000835265030.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.411 kcal
(2) G-P(sol) polarization free energy of solvation -31.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.025 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds