Wall clock time and date at job start Mon Mar 30 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99924 * 2 1 4 4 C 1.46902 * 110.99715 * 123.94663 * 2 1 3 5 5 C 1.50698 * 109.47046 * 170.00297 * 4 2 1 6 6 C 1.38395 * 119.92643 * 270.25179 * 5 4 2 7 7 C 1.38342 * 120.30516 * 180.29977 * 6 5 4 8 8 C 1.37974 * 120.14875 * 359.44610 * 7 6 5 9 9 C 1.39608 * 119.84372 * 0.27850 * 8 7 6 10 10 C 1.47731 * 120.14574 * 179.97438 * 9 8 7 11 11 O 1.21470 * 119.99879 * 179.97438 * 10 9 8 12 12 O 1.34713 * 119.99818 * 359.97438 * 10 9 8 13 13 C 1.45197 * 116.99587 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47145 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47359 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00384 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99527 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00453 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46783 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47284 * 120.00032 * 19 17 15 22 22 H 1.48507 * 109.46954 * 240.00269 * 19 17 15 23 23 C 1.37925 * 119.92591 * 90.00108 * 5 4 2 24 24 H 1.08992 * 109.47185 * 296.05159 * 1 2 3 25 25 H 1.09002 * 109.47015 * 56.05398 * 1 2 3 26 26 H 1.09001 * 109.46640 * 176.04955 * 1 2 3 27 27 H 1.08996 * 109.46523 * 183.95271 * 3 2 1 28 28 H 1.09002 * 109.46495 * 303.94566 * 3 2 1 29 29 H 1.09000 * 109.47363 * 63.94867 * 3 2 1 30 30 H 1.08999 * 109.46890 * 50.00284 * 4 2 1 31 31 H 1.08997 * 109.47613 * 290.00133 * 4 2 1 32 32 H 1.08000 * 119.84625 * 0.02862 * 6 5 4 33 33 H 1.08002 * 119.92904 * 179.72812 * 7 6 5 34 34 H 1.07999 * 120.07593 * 180.25535 * 8 7 6 35 35 H 1.09006 * 109.47496 * 300.00229 * 13 12 10 36 36 H 1.09003 * 109.47152 * 60.00102 * 13 12 10 37 37 H 1.08998 * 109.47421 * 300.00837 * 14 13 12 38 38 H 1.09003 * 109.46858 * 60.00110 * 14 13 12 39 39 H 0.97002 * 120.00421 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.07375 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4817 -0.9524 0.9731 6 6 3.9681 -2.0567 0.2954 7 6 5.3312 -2.2388 0.1451 8 6 6.2151 -1.3134 0.6607 9 6 5.7311 -0.1941 1.3405 10 6 6.6715 0.8007 1.8958 11 8 6.2474 1.7738 2.4864 12 8 7.9993 0.6287 1.7472 13 6 8.8637 1.6462 2.3180 14 6 10.3255 1.2815 2.0515 15 6 11.2227 2.3378 2.6433 16 1 10.7932 3.1844 3.1584 17 6 12.5918 2.2236 2.5273 18 7 13.1148 1.1930 1.8996 19 14 13.7040 3.5326 3.2614 20 1 12.8744 4.5803 3.9093 21 1 14.5977 2.9127 4.2724 22 1 14.5237 4.1459 2.1856 23 6 4.3541 -0.0194 1.4936 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3632 -1.0253 -0.0708 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9162 -0.8526 29 1 1.7043 1.8725 0.9232 30 1 1.5089 -1.7405 1.1758 31 1 1.7975 -0.2246 2.0629 32 1 3.2805 -2.7818 -0.1141 33 1 5.7043 -3.1051 -0.3811 34 1 7.2789 -1.4546 0.5391 35 1 8.6404 2.6105 1.8615 36 1 8.6945 1.7053 3.3932 37 1 10.5486 0.3173 2.5082 38 1 10.4950 1.2221 0.9764 39 1 14.0780 1.1123 1.8182 40 1 3.9731 0.8437 2.0191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:41 Heat of formation + Delta-G solvation = -66.820825 kcal Electronic energy + Delta-G solvation = -20488.654592 eV Core-core repulsion = 17268.138682 eV Total energy + Delta-G solvation = -3220.515910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31573 -39.13360 -37.19857 -36.03698 -33.36323 -32.14301 -31.31753 -30.16883 -27.87157 -27.07182 -25.41444 -23.91055 -22.73601 -21.62410 -20.98092 -20.15972 -17.53506 -16.82109 -16.13276 -15.98994 -15.94000 -15.72571 -15.58806 -15.15442 -14.62140 -14.50557 -14.04456 -13.43971 -13.10547 -12.77188 -12.66447 -12.57458 -12.36960 -12.29916 -11.99624 -11.86676 -11.58373 -11.24324 -11.16420 -11.00267 -10.77226 -10.69429 -10.25627 -9.65714 -9.63231 -9.28925 -9.09584 -9.02513 -8.63900 -8.44982 -6.10910 -4.15065 0.73360 1.18830 2.74586 3.13444 3.27424 3.35015 3.40330 3.57868 3.94598 4.38798 4.45395 4.66319 4.85263 4.86046 4.97415 5.02250 5.08259 5.19504 5.24354 5.25841 5.31794 5.40188 5.47303 5.51157 5.73152 5.74753 5.83201 6.08569 6.09305 6.25773 6.27982 6.34209 6.62841 6.63537 6.66743 6.75921 6.95368 7.55536 7.61936 7.86358 8.17520 8.25619 8.90644 9.49351 11.00692 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037570 B = 0.002882 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.091700 B = 9714.145808 C =10246.583101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.095 3.905 5 C -0.098 4.098 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.059 4.059 9 C -0.118 4.118 10 C 0.500 3.500 11 O -0.517 6.517 12 O -0.352 6.352 13 C 0.076 3.924 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.053 4.053 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.518 -7.033 -4.318 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.131 4.131 4 C -0.032 4.032 5 C -0.098 4.098 6 C -0.087 4.087 7 C -0.152 4.152 8 C -0.077 4.077 9 C -0.119 4.119 10 C 0.345 3.655 11 O -0.408 6.408 12 O -0.268 6.268 13 C 0.003 3.997 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.072 4.072 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.277 -7.025 -4.617 24.749 hybrid contribution 0.478 1.237 1.169 1.768 sum -22.799 -5.788 -3.449 23.774 Atomic orbital electron populations 1.22395 0.87082 1.02281 1.00661 1.62021 1.07703 1.14373 1.42548 1.22509 1.01782 0.88233 1.00557 1.21046 0.91108 0.99068 0.91992 1.19570 0.94746 0.95490 1.00017 1.21225 0.95475 0.96561 0.95465 1.21179 0.93040 0.99859 1.01078 1.21631 1.01293 0.91736 0.93059 1.19247 0.92414 0.96313 1.03954 1.21143 0.82913 0.84464 0.76991 1.90783 1.79353 1.30583 1.40032 1.86568 1.16184 1.51925 1.72084 1.23676 0.90687 0.88214 0.97093 1.19177 0.85374 0.98152 0.98566 1.21016 0.91008 1.07729 1.36611 0.92199 1.24987 0.98137 0.95909 0.95159 1.69982 1.11884 1.29063 1.41914 0.86416 0.80479 0.81505 0.78919 1.19591 1.20821 1.20821 1.21136 0.91219 0.98154 0.96649 0.95588 0.91200 0.91290 0.90686 0.91282 0.95374 0.89634 0.93622 0.85508 0.85059 0.83963 0.92220 0.92236 0.95312 0.95304 0.92757 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.73 16 2 N -0.54 -4.84 5.01 -252.72 -1.27 -6.11 16 3 C 0.02 0.16 9.14 60.07 0.55 0.71 16 4 C 0.10 0.82 5.11 -4.98 -0.03 0.79 16 5 C -0.10 -1.03 4.88 -104.68 -0.51 -1.54 16 6 C -0.07 -0.66 9.69 -39.49 -0.38 -1.04 16 7 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 8 C -0.06 -0.76 9.62 -39.17 -0.38 -1.14 16 9 C -0.12 -1.76 5.87 -104.98 -0.62 -2.38 16 10 C 0.50 9.36 7.90 34.61 0.27 9.64 16 11 O -0.52 -10.70 16.14 -19.24 -0.31 -11.01 16 12 O -0.35 -7.23 9.47 -40.53 -0.38 -7.62 16 13 C 0.08 1.72 5.41 37.16 0.20 1.92 16 14 C 0.02 0.64 5.35 -27.89 -0.15 0.49 16 15 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C -0.05 -0.68 7.50 -39.17 -0.29 -0.97 16 24 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 27 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.60 8.01 -51.93 -0.42 0.18 16 31 H 0.05 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 1.71 7.62 -52.49 -0.40 1.31 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -31.61 342.25 -8.80 -40.41 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.14 Total: -3.50 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.57 Total: -8.12 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: -0.53 Total: -31.79 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.69 Total: -18.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.61 -8.80 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.411 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds