Wall clock time and date at job start Mon Mar 30 2020 01:47:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42909 * 109.47148 * 2 1
4 4 N 1.41592 * 113.99922 * 179.97438 * 3 2 1
5 5 C 1.34782 * 120.00319 * 91.03874 * 4 3 2
6 6 O 1.21585 * 119.99985 * 178.21474 * 5 4 3
7 7 C 1.47640 * 119.99631 * 358.21360 * 5 4 3
8 8 C 1.40013 * 119.89921 * 20.38938 * 7 5 4
9 9 C 1.36312 * 120.10832 * 180.25636 * 8 7 5
10 10 C 1.40897 * 119.89204 * 359.47305 * 9 8 7
11 11 C 1.41110 * 120.10279 * 180.29956 * 10 9 8
12 12 H 1.07997 * 119.99863 * 148.69133 * 11 10 9
13 13 C 1.40224 * 119.99782 * 328.69431 * 11 10 9
14 14 N 1.30642 * 120.00530 * 352.97119 * 13 11 10
15 15 Si 1.86804 * 119.99662 * 172.97840 * 13 11 10
16 16 H 1.48498 * 109.47407 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47539 * 119.99698 * 15 13 11
18 18 H 1.48510 * 109.46672 * 239.99591 * 15 13 11
19 19 C 1.40886 * 119.79108 * 0.27302 * 10 9 8
20 20 C 1.36318 * 119.89302 * 0.02562 * 19 10 9
21 21 C 1.46502 * 120.00134 * 271.03450 * 4 3 2
22 22 C 1.53002 * 109.47101 * 120.00158 * 21 4 3
23 23 C 1.52996 * 109.47376 * 240.00355 * 21 4 3
24 24 H 1.09007 * 109.46826 * 60.00603 * 1 2 3
25 25 H 1.09004 * 109.47042 * 180.02562 * 1 2 3
26 26 H 1.09005 * 109.47816 * 300.00696 * 1 2 3
27 27 H 1.08988 * 109.47568 * 239.99351 * 2 1 3
28 28 H 1.09003 * 109.46874 * 119.98872 * 2 1 3
29 29 H 1.08009 * 119.94670 * 0.02739 * 8 7 5
30 30 H 1.08006 * 120.05407 * 179.74773 * 9 8 7
31 31 H 0.97004 * 120.00677 * 180.02562 * 14 13 11
32 32 H 1.07995 * 120.05461 * 180.02562 * 19 10 9
33 33 H 1.07998 * 119.94808 * 180.02562 * 20 19 10
34 34 H 1.09004 * 109.46958 * 0.02562 * 21 4 3
35 35 H 1.09004 * 109.46815 * 60.00402 * 22 21 4
36 36 H 1.08997 * 109.47030 * 180.02562 * 22 21 4
37 37 H 1.09007 * 109.47023 * 300.00365 * 22 21 4
38 38 H 1.09001 * 109.46790 * 59.99864 * 23 21 4
39 39 H 1.09005 * 109.47137 * 179.97438 * 23 21 4
40 40 H 1.08996 * 109.47413 * 299.99715 * 23 21 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 7 3.4178 1.4591 0.0006
5 6 4.0885 1.5333 -1.1662
6 8 5.2975 1.6619 -1.1653
7 6 3.3550 1.4582 -2.4453
8 6 1.9835 1.7376 -2.4807
9 6 1.3010 1.6645 -3.6584
10 6 1.9802 1.3180 -4.8432
11 6 1.2793 1.2471 -6.0659
12 1 1.7825 1.4854 -6.9913
13 6 -0.0705 0.8675 -6.0793
14 7 -0.6420 0.4476 -4.9821
15 14 -1.0516 0.9620 -7.6662
16 1 -0.1801 1.4661 -8.7577
17 1 -1.5547 -0.3900 -8.0184
18 1 -2.2002 1.8855 -7.4837
19 6 3.3614 1.0429 -4.8035
20 6 4.0341 1.1126 -3.6199
21 6 4.1493 1.4943 1.2694
22 6 5.1250 0.3172 1.3284
23 6 4.9276 2.8074 1.3732
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5139 0.8899
27 1 1.8933 -0.5139 -0.8898
28 1 1.8933 -0.5137 0.8901
29 1 1.4646 2.0079 -1.5728
30 1 0.2422 1.8762 -3.6840
31 1 -1.5756 0.1846 -4.9914
32 1 3.8862 0.7773 -5.7091
33 1 5.0930 0.9023 -3.5885
34 1 3.4441 1.4232 2.0975
35 1 5.8302 0.3880 0.5003
36 1 5.6689 0.3431 2.2726
37 1 4.5704 -0.6184 1.2545
38 1 4.2325 3.6460 1.3311
39 1 5.4715 2.8338 2.3175
40 1 5.6329 2.8782 0.5452
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000844075095.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:47:02
Heat of formation + Delta-G solvation = -14.373535 kcal
Electronic energy + Delta-G solvation = -22183.737351 eV
Core-core repulsion = 18965.495727 eV
Total energy + Delta-G solvation = -3218.241625 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.146 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-39.62162 -37.29843 -36.96495 -34.73748 -33.68087 -31.61539 -30.18746 -29.39832
-28.83404 -27.02761 -25.81746 -22.84404 -22.56150 -21.11609 -20.67197 -19.30242
-17.58591 -17.46650 -16.05480 -15.36957 -15.24620 -14.83930 -14.45052 -14.11107
-13.84008 -13.48038 -13.25061 -12.96461 -12.80362 -12.62100 -12.32207 -11.97948
-11.88819 -11.77125 -11.65777 -11.50558 -11.27416 -11.19034 -11.06100 -10.98567
-10.84351 -10.53368 -9.99364 -9.89000 -9.41346 -9.23862 -8.73077 -8.54364
-7.61319 -7.41203 -6.89136 -4.57130 2.24434 2.31320 2.93495 2.98846
3.04011 3.10758 3.75221 3.82602 4.52044 4.61177 5.05410 5.24264
5.26811 5.34163 5.40208 5.60657 5.62989 5.71974 5.74712 5.79747
5.98567 6.05932 6.13699 6.20626 6.32406 6.37301 6.42321 6.44506
6.54540 6.89448 6.93948 6.98439 7.11870 7.19951 7.56209 7.65120
7.88417 7.95731 8.13867 8.17455 8.50689 8.71010 8.82086 8.88962
10.02118
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.025917 B = 0.005096 C = 0.004475
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.106907 B = 5492.913182 C = 6255.154691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.025 3.975
3 O -0.136 6.136
4 N -0.481 5.481
5 C 0.585 3.415
6 O -0.552 6.552
7 C -0.279 4.279
8 C -0.065 4.065
9 C -0.175 4.175
10 C 0.130 3.870
11 C -0.449 4.449
12 H 0.082 0.918
13 C 0.072 3.928
14 N -0.786 5.786
15 Si 0.915 3.085
16 H -0.259 1.259
17 H -0.273 1.273
18 H -0.271 1.271
19 C -0.235 4.235
20 C -0.030 4.030
21 C 0.147 3.853
22 C -0.172 4.172
23 C -0.166 4.166
24 H 0.076 0.924
25 H 0.073 0.927
26 H 0.058 0.942
27 H 0.065 0.935
28 H 0.047 0.953
29 H 0.123 0.877
30 H 0.122 0.878
31 H 0.282 0.718
32 H 0.097 0.903
33 H 0.097 0.903
34 H 0.084 0.916
35 H 0.081 0.919
36 H 0.063 0.937
37 H 0.050 0.950
38 H 0.056 0.944
39 H 0.061 0.939
40 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.562 -1.030 9.548 9.620
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.053 4.053
3 O -0.141 6.141
4 N -0.259 5.259
5 C 0.383 3.617
6 O -0.433 6.433
7 C -0.284 4.284
8 C -0.084 4.084
9 C -0.195 4.195
10 C 0.127 3.873
11 C -0.478 4.478
12 H 0.100 0.900
13 C -0.146 4.146
14 N -0.411 5.411
15 Si 0.739 3.261
16 H -0.183 1.183
17 H -0.198 1.198
18 H -0.196 1.196
19 C -0.254 4.254
20 C -0.049 4.049
21 C 0.046 3.954
22 C -0.230 4.230
23 C -0.224 4.224
24 H 0.095 0.905
25 H 0.091 0.909
26 H 0.077 0.923
27 H 0.084 0.916
28 H 0.065 0.935
29 H 0.140 0.860
30 H 0.139 0.861
31 H 0.094 0.906
32 H 0.115 0.885
33 H 0.116 0.884
34 H 0.102 0.898
35 H 0.100 0.900
36 H 0.082 0.918
37 H 0.070 0.930
38 H 0.075 0.925
39 H 0.080 0.920
40 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 0.851 -0.886 9.646 9.724
hybrid contribution -0.742 -0.439 -0.593 1.047
sum 0.109 -1.325 9.052 9.150
Atomic orbital electron populations
1.21721 0.92513 1.02744 1.03388 1.22976 0.95752 0.85570 1.01029
1.90579 1.02323 1.25174 1.96038 1.50199 0.94508 1.75260 1.05948
1.18795 0.86096 0.73862 0.82927 1.90617 1.13834 1.52675 1.86160
1.18924 0.94782 1.23219 0.91427 1.21401 0.92537 0.96164 0.98272
1.21117 1.00300 1.05861 0.92198 1.17866 0.90988 0.84969 0.93501
1.19824 0.94603 1.38807 0.94549 0.90012 1.26017 0.97900 0.92533
0.98184 1.69710 1.13245 1.29735 1.28428 0.86146 0.79600 0.78818
0.81550 1.18281 1.19779 1.19586 1.20767 0.95867 1.12472 0.96317
1.20343 0.97360 0.95359 0.91835 1.21156 0.92996 0.96149 0.85135
1.22308 1.00318 0.97134 1.03282 1.22204 1.01139 0.96071 1.03006
0.90525 0.90863 0.92319 0.91625 0.93468 0.85959 0.86067 0.90638
0.88461 0.88447 0.89786 0.89964 0.91778 0.93042 0.92509 0.91970
0.89841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.96 10.28 37.16 0.38 -1.57 16
2 C 0.02 0.38 6.33 37.16 0.24 0.62 16
3 O -0.14 -2.40 7.51 -11.47 -0.09 -2.49 16
4 N -0.48 -8.76 2.90 -54.81 -0.16 -8.91 16
5 C 0.58 12.54 7.03 -12.42 -0.09 12.45 16
6 O -0.55 -12.36 12.71 5.29 0.07 -12.29 16
7 C -0.28 -6.50 5.84 -104.73 -0.61 -7.11 16
8 C -0.07 -1.50 8.03 -39.61 -0.32 -1.82 16
9 C -0.18 -4.38 8.58 -39.27 -0.34 -4.72 16
10 C 0.13 3.35 5.54 -106.80 -0.59 2.76 16
11 C -0.45 -11.36 9.05 -37.75 -0.34 -11.70 16
12 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16
13 C 0.07 1.72 5.30 -17.31 -0.09 1.63 16
14 N -0.79 -18.99 10.81 55.56 0.60 -18.39 16
15 Si 0.91 17.70 29.57 -169.99 -5.03 12.67 16
16 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16
17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16
18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16
19 C -0.23 -5.73 9.73 -39.27 -0.38 -6.12 16
20 C -0.03 -0.70 9.52 -39.61 -0.38 -1.08 16
21 C 0.15 2.17 3.54 -67.93 -0.24 1.93 16
22 C -0.17 -2.37 9.12 37.16 0.34 -2.03 16
23 C -0.17 -2.34 9.12 37.16 0.34 -2.00 16
24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.07 1.18 7.83 -51.94 -0.41 0.77 16
28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.12 2.65 4.97 -52.59 -0.26 2.39 16
30 H 0.12 3.09 6.27 -52.48 -0.33 2.76 16
31 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16
32 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16
33 H 0.10 2.19 7.76 -52.49 -0.41 1.78 16
34 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16
35 H 0.08 1.35 6.23 -51.93 -0.32 1.02 16
36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.08 1.39 6.10 -51.93 -0.32 1.08 16
LS Contribution 328.46 15.07 4.95 4.95
Total: -1.00 -27.31 328.46 -7.55 -34.87
By element:
Atomic # 1 Polarization: 14.19 SS G_CDS: -5.82 Total: 8.37 kcal
Atomic # 6 Polarization: -16.69 SS G_CDS: -2.08 Total: -18.78 kcal
Atomic # 7 Polarization: -27.75 SS G_CDS: 0.44 Total: -27.31 kcal
Atomic # 8 Polarization: -14.76 SS G_CDS: -0.02 Total: -14.78 kcal
Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -27.31 -7.55 -34.87 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000844075095.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.492 kcal
(2) G-P(sol) polarization free energy of solvation -27.311 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds