Wall clock time and date at job start Mon Mar 30 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.47148 * 2 1 4 4 N 1.41592 * 113.99922 * 179.97438 * 3 2 1 5 5 C 1.34782 * 120.00319 * 91.03874 * 4 3 2 6 6 O 1.21585 * 119.99985 * 178.21474 * 5 4 3 7 7 C 1.47640 * 119.99631 * 358.21360 * 5 4 3 8 8 C 1.40013 * 119.89921 * 20.38938 * 7 5 4 9 9 C 1.36312 * 120.10832 * 180.25636 * 8 7 5 10 10 C 1.40897 * 119.89204 * 359.47305 * 9 8 7 11 11 C 1.41110 * 120.10279 * 180.29956 * 10 9 8 12 12 H 1.07997 * 119.99863 * 148.69133 * 11 10 9 13 13 C 1.40224 * 119.99782 * 328.69431 * 11 10 9 14 14 N 1.30642 * 120.00530 * 352.97119 * 13 11 10 15 15 Si 1.86804 * 119.99662 * 172.97840 * 13 11 10 16 16 H 1.48498 * 109.47407 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47539 * 119.99698 * 15 13 11 18 18 H 1.48510 * 109.46672 * 239.99591 * 15 13 11 19 19 C 1.40886 * 119.79108 * 0.27302 * 10 9 8 20 20 C 1.36318 * 119.89302 * 0.02562 * 19 10 9 21 21 C 1.46502 * 120.00134 * 271.03450 * 4 3 2 22 22 C 1.53002 * 109.47101 * 120.00158 * 21 4 3 23 23 C 1.52996 * 109.47376 * 240.00355 * 21 4 3 24 24 H 1.09007 * 109.46826 * 60.00603 * 1 2 3 25 25 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47816 * 300.00696 * 1 2 3 27 27 H 1.08988 * 109.47568 * 239.99351 * 2 1 3 28 28 H 1.09003 * 109.46874 * 119.98872 * 2 1 3 29 29 H 1.08009 * 119.94670 * 0.02739 * 8 7 5 30 30 H 1.08006 * 120.05407 * 179.74773 * 9 8 7 31 31 H 0.97004 * 120.00677 * 180.02562 * 14 13 11 32 32 H 1.07995 * 120.05461 * 180.02562 * 19 10 9 33 33 H 1.07998 * 119.94808 * 180.02562 * 20 19 10 34 34 H 1.09004 * 109.46958 * 0.02562 * 21 4 3 35 35 H 1.09004 * 109.46815 * 60.00402 * 22 21 4 36 36 H 1.08997 * 109.47030 * 180.02562 * 22 21 4 37 37 H 1.09007 * 109.47023 * 300.00365 * 22 21 4 38 38 H 1.09001 * 109.46790 * 59.99864 * 23 21 4 39 39 H 1.09005 * 109.47137 * 179.97438 * 23 21 4 40 40 H 1.08996 * 109.47413 * 299.99715 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4178 1.4591 0.0006 5 6 4.0885 1.5333 -1.1662 6 8 5.2975 1.6619 -1.1653 7 6 3.3550 1.4582 -2.4453 8 6 1.9835 1.7376 -2.4807 9 6 1.3010 1.6645 -3.6584 10 6 1.9802 1.3180 -4.8432 11 6 1.2793 1.2471 -6.0659 12 1 1.7825 1.4854 -6.9913 13 6 -0.0705 0.8675 -6.0793 14 7 -0.6420 0.4476 -4.9821 15 14 -1.0516 0.9620 -7.6662 16 1 -0.1801 1.4661 -8.7577 17 1 -1.5547 -0.3900 -8.0184 18 1 -2.2002 1.8855 -7.4837 19 6 3.3614 1.0429 -4.8035 20 6 4.0341 1.1126 -3.6199 21 6 4.1493 1.4943 1.2694 22 6 5.1250 0.3172 1.3284 23 6 4.9276 2.8074 1.3732 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5137 0.8901 29 1 1.4646 2.0079 -1.5728 30 1 0.2422 1.8762 -3.6840 31 1 -1.5756 0.1846 -4.9914 32 1 3.8862 0.7773 -5.7091 33 1 5.0930 0.9023 -3.5885 34 1 3.4441 1.4232 2.0975 35 1 5.8302 0.3880 0.5003 36 1 5.6689 0.3431 2.2726 37 1 4.5704 -0.6184 1.2545 38 1 4.2325 3.6460 1.3311 39 1 5.4715 2.8338 2.3175 40 1 5.6329 2.8782 0.5452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844075095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:02 Heat of formation + Delta-G solvation = -14.373535 kcal Electronic energy + Delta-G solvation = -22183.737351 eV Core-core repulsion = 18965.495727 eV Total energy + Delta-G solvation = -3218.241625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62162 -37.29843 -36.96495 -34.73748 -33.68087 -31.61539 -30.18746 -29.39832 -28.83404 -27.02761 -25.81746 -22.84404 -22.56150 -21.11609 -20.67197 -19.30242 -17.58591 -17.46650 -16.05480 -15.36957 -15.24620 -14.83930 -14.45052 -14.11107 -13.84008 -13.48038 -13.25061 -12.96461 -12.80362 -12.62100 -12.32207 -11.97948 -11.88819 -11.77125 -11.65777 -11.50558 -11.27416 -11.19034 -11.06100 -10.98567 -10.84351 -10.53368 -9.99364 -9.89000 -9.41346 -9.23862 -8.73077 -8.54364 -7.61319 -7.41203 -6.89136 -4.57130 2.24434 2.31320 2.93495 2.98846 3.04011 3.10758 3.75221 3.82602 4.52044 4.61177 5.05410 5.24264 5.26811 5.34163 5.40208 5.60657 5.62989 5.71974 5.74712 5.79747 5.98567 6.05932 6.13699 6.20626 6.32406 6.37301 6.42321 6.44506 6.54540 6.89448 6.93948 6.98439 7.11870 7.19951 7.56209 7.65120 7.88417 7.95731 8.13867 8.17455 8.50689 8.71010 8.82086 8.88962 10.02118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.005096 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.106907 B = 5492.913182 C = 6255.154691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 O -0.136 6.136 4 N -0.481 5.481 5 C 0.585 3.415 6 O -0.552 6.552 7 C -0.279 4.279 8 C -0.065 4.065 9 C -0.175 4.175 10 C 0.130 3.870 11 C -0.449 4.449 12 H 0.082 0.918 13 C 0.072 3.928 14 N -0.786 5.786 15 Si 0.915 3.085 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.271 1.271 19 C -0.235 4.235 20 C -0.030 4.030 21 C 0.147 3.853 22 C -0.172 4.172 23 C -0.166 4.166 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.282 0.718 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -1.030 9.548 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 O -0.141 6.141 4 N -0.259 5.259 5 C 0.383 3.617 6 O -0.433 6.433 7 C -0.284 4.284 8 C -0.084 4.084 9 C -0.195 4.195 10 C 0.127 3.873 11 C -0.478 4.478 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.411 5.411 15 Si 0.739 3.261 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.254 4.254 20 C -0.049 4.049 21 C 0.046 3.954 22 C -0.230 4.230 23 C -0.224 4.224 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.851 -0.886 9.646 9.724 hybrid contribution -0.742 -0.439 -0.593 1.047 sum 0.109 -1.325 9.052 9.150 Atomic orbital electron populations 1.21721 0.92513 1.02744 1.03388 1.22976 0.95752 0.85570 1.01029 1.90579 1.02323 1.25174 1.96038 1.50199 0.94508 1.75260 1.05948 1.18795 0.86096 0.73862 0.82927 1.90617 1.13834 1.52675 1.86160 1.18924 0.94782 1.23219 0.91427 1.21401 0.92537 0.96164 0.98272 1.21117 1.00300 1.05861 0.92198 1.17866 0.90988 0.84969 0.93501 1.19824 0.94603 1.38807 0.94549 0.90012 1.26017 0.97900 0.92533 0.98184 1.69710 1.13245 1.29735 1.28428 0.86146 0.79600 0.78818 0.81550 1.18281 1.19779 1.19586 1.20767 0.95867 1.12472 0.96317 1.20343 0.97360 0.95359 0.91835 1.21156 0.92996 0.96149 0.85135 1.22308 1.00318 0.97134 1.03282 1.22204 1.01139 0.96071 1.03006 0.90525 0.90863 0.92319 0.91625 0.93468 0.85959 0.86067 0.90638 0.88461 0.88447 0.89786 0.89964 0.91778 0.93042 0.92509 0.91970 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 37.16 0.38 -1.57 16 2 C 0.02 0.38 6.33 37.16 0.24 0.62 16 3 O -0.14 -2.40 7.51 -11.47 -0.09 -2.49 16 4 N -0.48 -8.76 2.90 -54.81 -0.16 -8.91 16 5 C 0.58 12.54 7.03 -12.42 -0.09 12.45 16 6 O -0.55 -12.36 12.71 5.29 0.07 -12.29 16 7 C -0.28 -6.50 5.84 -104.73 -0.61 -7.11 16 8 C -0.07 -1.50 8.03 -39.61 -0.32 -1.82 16 9 C -0.18 -4.38 8.58 -39.27 -0.34 -4.72 16 10 C 0.13 3.35 5.54 -106.80 -0.59 2.76 16 11 C -0.45 -11.36 9.05 -37.75 -0.34 -11.70 16 12 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 13 C 0.07 1.72 5.30 -17.31 -0.09 1.63 16 14 N -0.79 -18.99 10.81 55.56 0.60 -18.39 16 15 Si 0.91 17.70 29.57 -169.99 -5.03 12.67 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 C -0.23 -5.73 9.73 -39.27 -0.38 -6.12 16 20 C -0.03 -0.70 9.52 -39.61 -0.38 -1.08 16 21 C 0.15 2.17 3.54 -67.93 -0.24 1.93 16 22 C -0.17 -2.37 9.12 37.16 0.34 -2.03 16 23 C -0.17 -2.34 9.12 37.16 0.34 -2.00 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.18 7.83 -51.94 -0.41 0.77 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.12 2.65 4.97 -52.59 -0.26 2.39 16 30 H 0.12 3.09 6.27 -52.48 -0.33 2.76 16 31 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 32 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.10 2.19 7.76 -52.49 -0.41 1.78 16 34 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 35 H 0.08 1.35 6.23 -51.93 -0.32 1.02 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.39 6.10 -51.93 -0.32 1.08 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -27.31 328.46 -7.55 -34.87 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.82 Total: 8.37 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.08 Total: -18.78 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.44 Total: -27.31 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.02 Total: -14.78 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.31 -7.55 -34.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844075095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.492 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds