Wall clock time and date at job start Mon Mar 30 2020 01:47:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42909 * 109.47148 * 2 1
4 4 N 1.41592 * 113.99922 * 179.97438 * 3 2 1
5 5 C 1.34782 * 120.00319 * 91.03874 * 4 3 2
6 6 O 1.21585 * 119.99985 * 178.21474 * 5 4 3
7 7 C 1.47640 * 119.99631 * 358.21360 * 5 4 3
8 8 C 1.40013 * 119.89921 * 20.38938 * 7 5 4
9 9 C 1.36312 * 120.10832 * 180.25636 * 8 7 5
10 10 C 1.40897 * 119.89204 * 359.47305 * 9 8 7
11 11 C 1.41110 * 120.10279 * 180.29956 * 10 9 8
12 12 H 1.07997 * 119.99863 * 148.69133 * 11 10 9
13 13 C 1.40224 * 119.99782 * 328.69431 * 11 10 9
14 14 N 1.30642 * 120.00530 * 352.97119 * 13 11 10
15 15 Si 1.86804 * 119.99662 * 172.97840 * 13 11 10
16 16 H 1.48498 * 109.47407 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47539 * 119.99698 * 15 13 11
18 18 H 1.48510 * 109.46672 * 239.99591 * 15 13 11
19 19 C 1.40886 * 119.79108 * 0.27302 * 10 9 8
20 20 C 1.36318 * 119.89302 * 0.02562 * 19 10 9
21 21 C 1.46502 * 120.00134 * 271.03450 * 4 3 2
22 22 C 1.53002 * 109.47101 * 120.00158 * 21 4 3
23 23 C 1.52996 * 109.47376 * 240.00355 * 21 4 3
24 24 H 1.09007 * 109.46826 * 60.00603 * 1 2 3
25 25 H 1.09004 * 109.47042 * 180.02562 * 1 2 3
26 26 H 1.09005 * 109.47816 * 300.00696 * 1 2 3
27 27 H 1.08988 * 109.47568 * 239.99351 * 2 1 3
28 28 H 1.09003 * 109.46874 * 119.98872 * 2 1 3
29 29 H 1.08009 * 119.94670 * 0.02739 * 8 7 5
30 30 H 1.08006 * 120.05407 * 179.74773 * 9 8 7
31 31 H 0.97004 * 120.00677 * 180.02562 * 14 13 11
32 32 H 1.07995 * 120.05461 * 180.02562 * 19 10 9
33 33 H 1.07998 * 119.94808 * 180.02562 * 20 19 10
34 34 H 1.09004 * 109.46958 * 0.02562 * 21 4 3
35 35 H 1.09004 * 109.46815 * 60.00402 * 22 21 4
36 36 H 1.08997 * 109.47030 * 180.02562 * 22 21 4
37 37 H 1.09007 * 109.47023 * 300.00365 * 22 21 4
38 38 H 1.09001 * 109.46790 * 59.99864 * 23 21 4
39 39 H 1.09005 * 109.47137 * 179.97438 * 23 21 4
40 40 H 1.08996 * 109.47413 * 299.99715 * 23 21 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 7 3.4178 1.4591 0.0006
5 6 4.0885 1.5333 -1.1662
6 8 5.2975 1.6619 -1.1653
7 6 3.3550 1.4582 -2.4453
8 6 1.9835 1.7376 -2.4807
9 6 1.3010 1.6645 -3.6584
10 6 1.9802 1.3180 -4.8432
11 6 1.2793 1.2471 -6.0659
12 1 1.7825 1.4854 -6.9913
13 6 -0.0705 0.8675 -6.0793
14 7 -0.6420 0.4476 -4.9821
15 14 -1.0516 0.9620 -7.6662
16 1 -0.1801 1.4661 -8.7577
17 1 -1.5547 -0.3900 -8.0184
18 1 -2.2002 1.8855 -7.4837
19 6 3.3614 1.0429 -4.8035
20 6 4.0341 1.1126 -3.6199
21 6 4.1493 1.4943 1.2694
22 6 5.1250 0.3172 1.3284
23 6 4.9276 2.8074 1.3732
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3635 0.5139 0.8899
27 1 1.8933 -0.5139 -0.8898
28 1 1.8933 -0.5137 0.8901
29 1 1.4646 2.0079 -1.5728
30 1 0.2422 1.8762 -3.6840
31 1 -1.5756 0.1846 -4.9914
32 1 3.8862 0.7773 -5.7091
33 1 5.0930 0.9023 -3.5885
34 1 3.4441 1.4232 2.0975
35 1 5.8302 0.3880 0.5003
36 1 5.6689 0.3431 2.2726
37 1 4.5704 -0.6184 1.2545
38 1 4.2325 3.6460 1.3311
39 1 5.4715 2.8338 2.3175
40 1 5.6329 2.8782 0.5452
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000844075095.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:47:01
Heat of formation + Delta-G solvation = -27.442917 kcal
Electronic energy + Delta-G solvation = -22184.304082 eV
Core-core repulsion = 18965.495727 eV
Total energy + Delta-G solvation = -3218.808356 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.146 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.19763 -39.09333 -38.46141 -36.11437 -35.44978 -32.95546 -31.91376 -31.29066
-30.27251 -28.12518 -27.61957 -24.40427 -23.79618 -22.90644 -22.39460 -20.75573
-19.33713 -19.16055 -17.60850 -17.02057 -16.69173 -16.28197 -16.08791 -15.47829
-15.37881 -14.95005 -14.92134 -14.53889 -14.23246 -13.96722 -13.76964 -13.61631
-13.32347 -13.17038 -13.01149 -12.89580 -12.82281 -12.58501 -12.49970 -12.38937
-12.19194 -12.07630 -11.68067 -11.50542 -11.16981 -10.94875 -10.33769 -10.00329
-9.51415 -9.30840 -8.68310 -6.48636 0.43618 0.92520 1.17785 1.39571
1.41404 1.54756 2.02937 2.19399 2.79103 3.12946 3.68377 3.91558
4.07268 4.11893 4.19733 4.21293 4.34954 4.42814 4.43663 4.57387
4.67662 4.74750 4.82377 4.92184 4.97892 5.00549 5.03661 5.09839
5.19422 5.26144 5.31173 5.34588 5.37815 5.60783 5.67206 5.80922
6.00050 6.05511 6.26125 6.58611 6.61521 6.81641 6.91794 7.24142
8.25895
Molecular weight = 277.15amu
Principal moments of inertia in cm(-1)
A = 0.025917 B = 0.005096 C = 0.004475
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.106907 B = 5492.913182 C = 6255.154691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.025 3.975
3 O -0.146 6.146
4 N -0.476 5.476
5 C 0.582 3.418
6 O -0.566 6.566
7 C -0.290 4.290
8 C -0.056 4.056
9 C -0.191 4.191
10 C 0.103 3.897
11 C -0.481 4.481
12 H 0.081 0.919
13 C 0.035 3.965
14 N -0.811 5.811
15 Si 0.989 3.011
16 H -0.259 1.259
17 H -0.264 1.264
18 H -0.262 1.262
19 C -0.248 4.248
20 C -0.037 4.037
21 C 0.139 3.861
22 C -0.166 4.166
23 C -0.162 4.162
24 H 0.050 0.950
25 H 0.092 0.908
26 H 0.080 0.920
27 H 0.035 0.965
28 H 0.075 0.925
29 H 0.137 0.863
30 H 0.111 0.889
31 H 0.293 0.707
32 H 0.105 0.895
33 H 0.105 0.895
34 H 0.115 0.885
35 H 0.051 0.949
36 H 0.098 0.902
37 H 0.053 0.947
38 H 0.053 0.947
39 H 0.097 0.903
40 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.249 -1.353 11.133 11.217
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.053 4.053
3 O -0.151 6.151
4 N -0.253 5.253
5 C 0.379 3.621
6 O -0.448 6.448
7 C -0.294 4.294
8 C -0.075 4.075
9 C -0.211 4.211
10 C 0.100 3.900
11 C -0.510 4.510
12 H 0.099 0.901
13 C -0.182 4.182
14 N -0.435 5.435
15 Si 0.809 3.191
16 H -0.183 1.183
17 H -0.189 1.189
18 H -0.187 1.187
19 C -0.267 4.267
20 C -0.057 4.057
21 C 0.039 3.961
22 C -0.224 4.224
23 C -0.220 4.220
24 H 0.069 0.931
25 H 0.111 0.889
26 H 0.099 0.901
27 H 0.053 0.947
28 H 0.093 0.907
29 H 0.154 0.846
30 H 0.129 0.871
31 H 0.104 0.896
32 H 0.123 0.877
33 H 0.123 0.877
34 H 0.132 0.868
35 H 0.070 0.930
36 H 0.117 0.883
37 H 0.072 0.928
38 H 0.072 0.928
39 H 0.116 0.884
40 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 0.041 -1.212 11.273 11.338
hybrid contribution -0.456 -0.364 -0.947 1.112
sum -0.416 -1.576 10.326 10.454
Atomic orbital electron populations
1.21716 0.90852 1.03990 1.03155 1.23093 0.96961 0.84386 1.00819
1.90526 1.01869 1.26694 1.96023 1.50169 0.94920 1.73923 1.06294
1.18486 0.85892 0.74298 0.83458 1.90615 1.14211 1.53271 1.86751
1.19273 0.95040 1.22424 0.92670 1.21515 0.92539 0.95224 0.98207
1.21087 0.99960 1.07151 0.92863 1.18192 0.91753 0.85771 0.94279
1.20064 0.96063 1.40433 0.94392 0.90054 1.26849 0.98174 0.91459
1.01676 1.69744 1.14073 1.29414 1.30308 0.85051 0.77905 0.79144
0.77015 1.18255 1.18890 1.18650 1.20919 0.95790 1.13002 0.97029
1.20506 0.97821 0.95358 0.91978 1.21560 0.93621 0.96919 0.83987
1.22255 0.99643 0.96707 1.03843 1.22164 1.00570 0.95602 1.03627
0.93113 0.88912 0.90091 0.94689 0.90725 0.84565 0.87088 0.89603
0.87687 0.87666 0.86754 0.93006 0.88333 0.92839 0.92814 0.88422
0.92859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.51 10.28 71.98 0.74 -2.77 16
2 C 0.02 0.74 6.33 71.98 0.46 1.19 16
3 O -0.15 -4.97 7.51 -38.77 -0.29 -5.26 16
4 N -0.48 -16.77 2.90 -445.58 -1.29 -18.06 16
5 C 0.58 25.02 7.03 86.73 0.61 25.63 16
6 O -0.57 -25.56 12.71 -3.98 -0.05 -25.61 16
7 C -0.29 -13.77 5.84 -19.93 -0.12 -13.88 16
8 C -0.06 -2.66 8.03 22.25 0.18 -2.49 16
9 C -0.19 -9.87 8.58 22.47 0.19 -9.68 16
10 C 0.10 5.51 5.54 -21.28 -0.12 5.39 16
11 C -0.48 -25.00 9.05 23.46 0.21 -24.79 16
12 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16
13 C 0.04 1.68 5.30 85.35 0.45 2.13 16
14 N -0.81 -39.59 10.81 21.87 0.24 -39.35 16
15 Si 0.99 36.02 29.57 68.60 2.03 38.05 16
16 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16
17 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16
18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16
19 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16
20 C -0.04 -1.82 9.52 22.25 0.21 -1.61 16
21 C 0.14 3.73 3.54 44.99 0.16 3.89 16
22 C -0.17 -4.17 9.12 71.98 0.66 -3.51 16
23 C -0.16 -4.20 9.12 71.98 0.66 -3.55 16
24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16
25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16
27 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16
28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
29 H 0.14 5.96 4.97 -4.58 -0.02 5.94 16
30 H 0.11 5.87 6.27 -2.91 -0.02 5.86 16
31 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16
32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16
33 H 0.11 4.85 7.76 -2.91 -0.02 4.83 16
34 H 0.11 2.43 8.12 -2.38 -0.02 2.41 16
35 H 0.05 1.64 6.23 -2.38 -0.01 1.63 16
36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16
37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16
40 H 0.05 1.73 6.10 -2.39 -0.01 1.72 16
Total: -1.00 -60.57 328.46 6.16 -54.41
By element:
Atomic # 1 Polarization: 31.18 SS G_CDS: 1.02 Total: 32.20 kcal
Atomic # 6 Polarization: -40.89 SS G_CDS: 4.51 Total: -36.38 kcal
Atomic # 7 Polarization: -56.36 SS G_CDS: -1.06 Total: -57.41 kcal
Atomic # 8 Polarization: -30.53 SS G_CDS: -0.34 Total: -30.87 kcal
Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal
Total: -60.57 6.16 -54.41 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000844075095.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.966 kcal
(2) G-P(sol) polarization free energy of solvation -60.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds