Wall clock time and date at job start Mon Mar 30 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.47148 * 2 1 4 4 N 1.41592 * 113.99922 * 179.97438 * 3 2 1 5 5 C 1.34782 * 120.00319 * 91.03874 * 4 3 2 6 6 O 1.21585 * 119.99985 * 178.21474 * 5 4 3 7 7 C 1.47640 * 119.99631 * 358.21360 * 5 4 3 8 8 C 1.40013 * 119.89921 * 20.38938 * 7 5 4 9 9 C 1.36312 * 120.10832 * 180.25636 * 8 7 5 10 10 C 1.40897 * 119.89204 * 359.47305 * 9 8 7 11 11 C 1.41110 * 120.10279 * 180.29956 * 10 9 8 12 12 H 1.07997 * 119.99863 * 148.69133 * 11 10 9 13 13 C 1.40224 * 119.99782 * 328.69431 * 11 10 9 14 14 N 1.30642 * 120.00530 * 352.97119 * 13 11 10 15 15 Si 1.86804 * 119.99662 * 172.97840 * 13 11 10 16 16 H 1.48498 * 109.47407 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47539 * 119.99698 * 15 13 11 18 18 H 1.48510 * 109.46672 * 239.99591 * 15 13 11 19 19 C 1.40886 * 119.79108 * 0.27302 * 10 9 8 20 20 C 1.36318 * 119.89302 * 0.02562 * 19 10 9 21 21 C 1.46502 * 120.00134 * 271.03450 * 4 3 2 22 22 C 1.53002 * 109.47101 * 120.00158 * 21 4 3 23 23 C 1.52996 * 109.47376 * 240.00355 * 21 4 3 24 24 H 1.09007 * 109.46826 * 60.00603 * 1 2 3 25 25 H 1.09004 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47816 * 300.00696 * 1 2 3 27 27 H 1.08988 * 109.47568 * 239.99351 * 2 1 3 28 28 H 1.09003 * 109.46874 * 119.98872 * 2 1 3 29 29 H 1.08009 * 119.94670 * 0.02739 * 8 7 5 30 30 H 1.08006 * 120.05407 * 179.74773 * 9 8 7 31 31 H 0.97004 * 120.00677 * 180.02562 * 14 13 11 32 32 H 1.07995 * 120.05461 * 180.02562 * 19 10 9 33 33 H 1.07998 * 119.94808 * 180.02562 * 20 19 10 34 34 H 1.09004 * 109.46958 * 0.02562 * 21 4 3 35 35 H 1.09004 * 109.46815 * 60.00402 * 22 21 4 36 36 H 1.08997 * 109.47030 * 180.02562 * 22 21 4 37 37 H 1.09007 * 109.47023 * 300.00365 * 22 21 4 38 38 H 1.09001 * 109.46790 * 59.99864 * 23 21 4 39 39 H 1.09005 * 109.47137 * 179.97438 * 23 21 4 40 40 H 1.08996 * 109.47413 * 299.99715 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4178 1.4591 0.0006 5 6 4.0885 1.5333 -1.1662 6 8 5.2975 1.6619 -1.1653 7 6 3.3550 1.4582 -2.4453 8 6 1.9835 1.7376 -2.4807 9 6 1.3010 1.6645 -3.6584 10 6 1.9802 1.3180 -4.8432 11 6 1.2793 1.2471 -6.0659 12 1 1.7825 1.4854 -6.9913 13 6 -0.0705 0.8675 -6.0793 14 7 -0.6420 0.4476 -4.9821 15 14 -1.0516 0.9620 -7.6662 16 1 -0.1801 1.4661 -8.7577 17 1 -1.5547 -0.3900 -8.0184 18 1 -2.2002 1.8855 -7.4837 19 6 3.3614 1.0429 -4.8035 20 6 4.0341 1.1126 -3.6199 21 6 4.1493 1.4943 1.2694 22 6 5.1250 0.3172 1.3284 23 6 4.9276 2.8074 1.3732 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5137 0.8901 29 1 1.4646 2.0079 -1.5728 30 1 0.2422 1.8762 -3.6840 31 1 -1.5756 0.1846 -4.9914 32 1 3.8862 0.7773 -5.7091 33 1 5.0930 0.9023 -3.5885 34 1 3.4441 1.4232 2.0975 35 1 5.8302 0.3880 0.5003 36 1 5.6689 0.3431 2.2726 37 1 4.5704 -0.6184 1.2545 38 1 4.2325 3.6460 1.3311 39 1 5.4715 2.8338 2.3175 40 1 5.6329 2.8782 0.5452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844075095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:01 Heat of formation + Delta-G solvation = -27.442917 kcal Electronic energy + Delta-G solvation = -22184.304082 eV Core-core repulsion = 18965.495727 eV Total energy + Delta-G solvation = -3218.808356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19763 -39.09333 -38.46141 -36.11437 -35.44978 -32.95546 -31.91376 -31.29066 -30.27251 -28.12518 -27.61957 -24.40427 -23.79618 -22.90644 -22.39460 -20.75573 -19.33713 -19.16055 -17.60850 -17.02057 -16.69173 -16.28197 -16.08791 -15.47829 -15.37881 -14.95005 -14.92134 -14.53889 -14.23246 -13.96722 -13.76964 -13.61631 -13.32347 -13.17038 -13.01149 -12.89580 -12.82281 -12.58501 -12.49970 -12.38937 -12.19194 -12.07630 -11.68067 -11.50542 -11.16981 -10.94875 -10.33769 -10.00329 -9.51415 -9.30840 -8.68310 -6.48636 0.43618 0.92520 1.17785 1.39571 1.41404 1.54756 2.02937 2.19399 2.79103 3.12946 3.68377 3.91558 4.07268 4.11893 4.19733 4.21293 4.34954 4.42814 4.43663 4.57387 4.67662 4.74750 4.82377 4.92184 4.97892 5.00549 5.03661 5.09839 5.19422 5.26144 5.31173 5.34588 5.37815 5.60783 5.67206 5.80922 6.00050 6.05511 6.26125 6.58611 6.61521 6.81641 6.91794 7.24142 8.25895 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.005096 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.106907 B = 5492.913182 C = 6255.154691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 O -0.146 6.146 4 N -0.476 5.476 5 C 0.582 3.418 6 O -0.566 6.566 7 C -0.290 4.290 8 C -0.056 4.056 9 C -0.191 4.191 10 C 0.103 3.897 11 C -0.481 4.481 12 H 0.081 0.919 13 C 0.035 3.965 14 N -0.811 5.811 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.262 1.262 19 C -0.248 4.248 20 C -0.037 4.037 21 C 0.139 3.861 22 C -0.166 4.166 23 C -0.162 4.162 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.293 0.707 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -1.353 11.133 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 O -0.151 6.151 4 N -0.253 5.253 5 C 0.379 3.621 6 O -0.448 6.448 7 C -0.294 4.294 8 C -0.075 4.075 9 C -0.211 4.211 10 C 0.100 3.900 11 C -0.510 4.510 12 H 0.099 0.901 13 C -0.182 4.182 14 N -0.435 5.435 15 Si 0.809 3.191 16 H -0.183 1.183 17 H -0.189 1.189 18 H -0.187 1.187 19 C -0.267 4.267 20 C -0.057 4.057 21 C 0.039 3.961 22 C -0.224 4.224 23 C -0.220 4.220 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.041 -1.212 11.273 11.338 hybrid contribution -0.456 -0.364 -0.947 1.112 sum -0.416 -1.576 10.326 10.454 Atomic orbital electron populations 1.21716 0.90852 1.03990 1.03155 1.23093 0.96961 0.84386 1.00819 1.90526 1.01869 1.26694 1.96023 1.50169 0.94920 1.73923 1.06294 1.18486 0.85892 0.74298 0.83458 1.90615 1.14211 1.53271 1.86751 1.19273 0.95040 1.22424 0.92670 1.21515 0.92539 0.95224 0.98207 1.21087 0.99960 1.07151 0.92863 1.18192 0.91753 0.85771 0.94279 1.20064 0.96063 1.40433 0.94392 0.90054 1.26849 0.98174 0.91459 1.01676 1.69744 1.14073 1.29414 1.30308 0.85051 0.77905 0.79144 0.77015 1.18255 1.18890 1.18650 1.20919 0.95790 1.13002 0.97029 1.20506 0.97821 0.95358 0.91978 1.21560 0.93621 0.96919 0.83987 1.22255 0.99643 0.96707 1.03843 1.22164 1.00570 0.95602 1.03627 0.93113 0.88912 0.90091 0.94689 0.90725 0.84565 0.87088 0.89603 0.87687 0.87666 0.86754 0.93006 0.88333 0.92839 0.92814 0.88422 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 10.28 71.98 0.74 -2.77 16 2 C 0.02 0.74 6.33 71.98 0.46 1.19 16 3 O -0.15 -4.97 7.51 -38.77 -0.29 -5.26 16 4 N -0.48 -16.77 2.90 -445.58 -1.29 -18.06 16 5 C 0.58 25.02 7.03 86.73 0.61 25.63 16 6 O -0.57 -25.56 12.71 -3.98 -0.05 -25.61 16 7 C -0.29 -13.77 5.84 -19.93 -0.12 -13.88 16 8 C -0.06 -2.66 8.03 22.25 0.18 -2.49 16 9 C -0.19 -9.87 8.58 22.47 0.19 -9.68 16 10 C 0.10 5.51 5.54 -21.28 -0.12 5.39 16 11 C -0.48 -25.00 9.05 23.46 0.21 -24.79 16 12 H 0.08 4.07 7.86 -2.91 -0.02 4.05 16 13 C 0.04 1.68 5.30 85.35 0.45 2.13 16 14 N -0.81 -39.59 10.81 21.87 0.24 -39.35 16 15 Si 0.99 36.02 29.57 68.60 2.03 38.05 16 16 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 17 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 19 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 20 C -0.04 -1.82 9.52 22.25 0.21 -1.61 16 21 C 0.14 3.73 3.54 44.99 0.16 3.89 16 22 C -0.17 -4.17 9.12 71.98 0.66 -3.51 16 23 C -0.16 -4.20 9.12 71.98 0.66 -3.55 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.14 5.96 4.97 -4.58 -0.02 5.94 16 30 H 0.11 5.87 6.27 -2.91 -0.02 5.86 16 31 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.11 4.85 7.76 -2.91 -0.02 4.83 16 34 H 0.11 2.43 8.12 -2.38 -0.02 2.41 16 35 H 0.05 1.64 6.23 -2.38 -0.01 1.63 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.05 1.73 6.10 -2.39 -0.01 1.72 16 Total: -1.00 -60.57 328.46 6.16 -54.41 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 1.02 Total: 32.20 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 4.51 Total: -36.38 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.06 Total: -57.41 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.34 Total: -30.87 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -60.57 6.16 -54.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844075095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.966 kcal (2) G-P(sol) polarization free energy of solvation -60.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds