Wall clock time and date at job start Mon Mar 30 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99882 * 2 1 4 4 C 1.38762 * 120.04149 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94225 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.06047 * 359.97438 * 5 4 3 7 7 C 1.38184 * 120.14933 * 0.04327 * 6 5 4 8 8 C 1.38471 * 119.98639 * 180.02562 * 3 2 1 9 9 C 1.51170 * 131.92619 * 0.06639 * 8 3 2 10 10 N 1.48052 * 105.73610 * 197.48071 * 9 8 3 11 11 C 1.46906 * 111.00054 * 213.01031 * 10 9 8 12 12 C 1.52991 * 109.47354 * 189.99954 * 11 10 9 13 13 O 1.42899 * 109.47079 * 65.00032 * 12 11 10 14 14 C 1.42901 * 113.99864 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47080 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99713 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00267 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47140 * 59.99577 * 19 17 15 21 21 H 1.48495 * 109.47207 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47085 * 300.00118 * 19 17 15 23 23 C 1.48050 * 103.87970 * 332.36494 * 10 9 8 24 24 H 1.09009 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47232 * 299.99437 * 1 2 3 26 26 H 1.09001 * 109.47519 * 60.00052 * 1 2 3 27 27 H 1.08001 * 120.03055 * 359.96996 * 4 3 2 28 28 H 1.07998 * 119.97023 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.92459 * 180.02562 * 6 5 4 30 30 H 1.09002 * 110.20994 * 78.38868 * 9 8 3 31 31 H 1.08999 * 110.20627 * 316.56638 * 9 8 3 32 32 H 1.09003 * 109.47109 * 310.00404 * 11 10 9 33 33 H 1.09003 * 109.46892 * 69.99559 * 11 10 9 34 34 H 1.09004 * 109.47229 * 184.99560 * 12 11 10 35 35 H 1.09002 * 109.47178 * 304.99820 * 12 11 10 36 36 H 1.08998 * 109.47353 * 299.99781 * 14 13 12 37 37 H 1.08998 * 109.47505 * 59.99994 * 14 13 12 38 38 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 39 39 H 1.09007 * 110.20684 * 146.64767 * 23 10 9 40 40 H 1.08996 * 110.20966 * 268.46241 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9201 3.6048 0.0011 6 6 3.3012 3.6763 0.0016 7 6 4.0561 2.5188 0.0007 8 6 3.4287 1.2831 -0.0005 9 6 4.4961 0.2125 -0.0025 10 7 5.7423 0.8873 0.4259 11 6 6.9149 0.2928 -0.2296 12 6 8.1907 0.8378 0.4154 13 8 8.2586 0.4058 1.7759 14 6 9.4193 0.8624 2.4734 15 6 9.3877 0.3501 3.8903 16 1 8.5636 -0.2624 4.2248 17 6 10.4105 0.6644 4.7600 18 7 11.4139 1.4108 4.3527 19 14 10.3711 0.0300 6.5165 20 1 10.3523 -1.4548 6.5062 21 1 11.5772 0.5044 7.2413 22 1 9.1525 0.5357 7.1981 23 6 5.5508 2.2917 -0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2124 2.3200 0.0005 28 1 1.3330 4.5113 0.0011 29 1 3.7909 4.6389 0.0024 30 1 4.6157 -0.1981 -1.0051 31 1 4.2362 -0.5795 0.6998 32 1 6.8845 -0.7909 -0.1156 33 1 6.9064 0.5470 -1.2895 34 1 9.0598 0.4661 -0.1276 35 1 8.1789 1.9271 0.3802 36 1 10.3135 0.4909 1.9730 37 1 9.4334 1.9523 2.4809 38 1 12.1336 1.6315 4.9644 39 1 6.0350 2.9689 0.7022 40 1 5.9544 2.4388 -1.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859940129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:28 Heat of formation + Delta-G solvation = -41.412115 kcal Electronic energy + Delta-G solvation = -20868.728289 eV Core-core repulsion = 17649.314183 eV Total energy + Delta-G solvation = -3219.414106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78159 -38.82597 -36.99911 -35.95387 -32.75495 -31.78102 -30.83565 -28.72673 -27.45211 -27.40390 -26.55769 -23.64813 -22.21221 -21.45791 -21.42519 -20.67065 -17.78544 -16.63830 -16.35517 -16.03929 -15.85720 -15.63869 -15.35044 -14.88378 -14.69326 -14.21072 -14.06374 -13.36386 -13.24643 -13.06682 -12.83618 -12.63005 -12.37346 -12.04615 -11.86861 -11.55465 -11.35683 -11.21609 -11.04939 -11.03891 -10.77299 -10.66926 -10.36530 -9.94029 -9.06643 -8.99807 -8.72152 -8.32476 -8.08323 -8.03877 -6.03286 -4.03916 1.14145 1.31070 3.10443 3.38350 3.40109 3.44999 3.57518 4.03940 4.28512 4.42636 4.51453 4.72567 4.85888 4.89479 4.91122 5.08831 5.20994 5.23095 5.30374 5.33139 5.39203 5.47876 5.55394 5.65746 5.69256 5.88633 5.96413 6.00289 6.10101 6.17425 6.28387 6.31686 6.41946 6.59825 6.93669 7.13160 7.19846 7.23494 7.52135 7.88718 8.25206 8.70332 9.10818 9.60616 11.08442 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.003333 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.300981 B = 8399.335738 C = 8642.464123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.145 3.855 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.056 4.056 8 C -0.132 4.132 9 C 0.086 3.914 10 N -0.485 5.485 11 C 0.050 3.950 12 C 0.070 3.930 13 O -0.380 6.380 14 C 0.195 3.805 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.072 3.928 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.097 0.903 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.742 2.275 -13.421 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.099 3.901 4 C -0.229 4.229 5 C -0.098 4.098 6 C -0.156 4.156 7 C -0.057 4.057 8 C -0.133 4.133 9 C -0.041 4.041 10 N -0.209 5.209 11 C -0.078 4.078 12 C -0.009 4.009 13 O -0.300 6.300 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.055 4.055 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.498 1.970 -12.684 24.185 hybrid contribution -0.093 0.208 -0.068 0.238 sum -20.591 2.178 -12.752 24.318 Atomic orbital electron populations 1.23043 0.78630 1.03896 1.01188 1.86111 1.21153 1.26894 1.88684 1.18351 0.90329 0.84416 0.96974 1.21107 0.99769 0.92130 1.09880 1.20824 0.94133 0.96983 0.97891 1.20424 0.93343 0.97513 1.04337 1.20574 0.95792 0.92671 0.96642 1.19848 0.90852 0.96609 1.06021 1.21485 0.87270 0.95560 0.99790 1.65309 1.01304 1.00881 1.53361 1.22446 0.90132 1.00780 0.94469 1.22169 0.94574 0.97432 0.86685 1.87950 1.46580 1.74970 1.20456 1.20166 0.82247 0.93964 0.91597 1.21047 1.07080 1.31982 0.94758 0.91546 1.24944 0.95098 0.95282 0.99249 1.69959 1.10445 1.37567 1.36127 0.86402 0.77356 0.79246 0.83508 1.20045 1.21253 1.20005 1.21785 0.90883 0.92758 1.00121 0.88282 0.92658 0.92829 0.85312 0.85506 0.85686 0.92613 0.88946 0.89620 0.93655 0.94138 0.94619 0.98013 0.97909 0.92719 0.88460 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.73 10.48 -19.43 -0.20 -3.93 16 3 C 0.14 1.84 6.68 -39.30 -0.26 1.58 16 4 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 5 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 6 C -0.14 -1.59 10.04 -39.58 -0.40 -1.98 16 7 C -0.06 -0.77 6.27 -104.27 -0.65 -1.42 16 8 C -0.13 -1.87 6.22 -104.18 -0.65 -2.52 16 9 C 0.09 1.25 6.55 -4.11 -0.03 1.22 16 10 N -0.49 -7.98 5.39 -234.92 -1.27 -9.24 16 11 C 0.05 0.77 5.06 -3.83 -0.02 0.75 16 12 C 0.07 1.32 6.13 37.15 0.23 1.55 16 13 O -0.38 -9.56 10.27 -35.23 -0.36 -9.92 16 14 C 0.19 5.52 5.69 36.01 0.20 5.72 16 15 C -0.51 -15.54 9.43 -34.44 -0.32 -15.87 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.91 22.46 29.54 -169.99 -5.02 17.44 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.07 1.03 5.89 -4.10 -0.02 1.00 16 24 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.06 0.72 7.81 -51.93 -0.41 0.31 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 33 H 0.05 0.57 7.68 -51.93 -0.40 0.18 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.66 7.59 -51.93 -0.39 0.27 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 40 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -34.22 333.98 -8.93 -43.15 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.06 Total: -4.67 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.78 Total: -11.01 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.53 Total: -36.09 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.57 Total: -13.85 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.22 -8.93 -43.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859940129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.739 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds