Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99882 * 2 1 4 4 C 1.38762 * 120.04149 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94225 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.06047 * 359.97438 * 5 4 3 7 7 C 1.38184 * 120.14933 * 0.04327 * 6 5 4 8 8 C 1.38471 * 119.98639 * 180.02562 * 3 2 1 9 9 C 1.51170 * 131.92619 * 0.06639 * 8 3 2 10 10 N 1.48052 * 105.73610 * 197.48071 * 9 8 3 11 11 C 1.46906 * 111.00054 * 213.01031 * 10 9 8 12 12 C 1.52991 * 109.47354 * 189.99954 * 11 10 9 13 13 O 1.42899 * 109.47079 * 65.00032 * 12 11 10 14 14 C 1.42901 * 113.99864 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47080 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00221 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99713 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00267 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47140 * 59.99577 * 19 17 15 21 21 H 1.48495 * 109.47207 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47085 * 300.00118 * 19 17 15 23 23 C 1.48050 * 103.87970 * 332.36494 * 10 9 8 24 24 H 1.09009 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47232 * 299.99437 * 1 2 3 26 26 H 1.09001 * 109.47519 * 60.00052 * 1 2 3 27 27 H 1.08001 * 120.03055 * 359.96996 * 4 3 2 28 28 H 1.07998 * 119.97023 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.92459 * 180.02562 * 6 5 4 30 30 H 1.09002 * 110.20994 * 78.38868 * 9 8 3 31 31 H 1.08999 * 110.20627 * 316.56638 * 9 8 3 32 32 H 1.09003 * 109.47109 * 310.00404 * 11 10 9 33 33 H 1.09003 * 109.46892 * 69.99559 * 11 10 9 34 34 H 1.09004 * 109.47229 * 184.99560 * 12 11 10 35 35 H 1.09002 * 109.47178 * 304.99820 * 12 11 10 36 36 H 1.08998 * 109.47353 * 299.99781 * 14 13 12 37 37 H 1.08998 * 109.47505 * 59.99994 * 14 13 12 38 38 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 39 39 H 1.09007 * 110.20684 * 146.64767 * 23 10 9 40 40 H 1.08996 * 110.20966 * 268.46241 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9201 3.6048 0.0011 6 6 3.3012 3.6763 0.0016 7 6 4.0561 2.5188 0.0007 8 6 3.4287 1.2831 -0.0005 9 6 4.4961 0.2125 -0.0025 10 7 5.7423 0.8873 0.4259 11 6 6.9149 0.2928 -0.2296 12 6 8.1907 0.8378 0.4154 13 8 8.2586 0.4058 1.7759 14 6 9.4193 0.8624 2.4734 15 6 9.3877 0.3501 3.8903 16 1 8.5636 -0.2624 4.2248 17 6 10.4105 0.6644 4.7600 18 7 11.4139 1.4108 4.3527 19 14 10.3711 0.0300 6.5165 20 1 10.3523 -1.4548 6.5062 21 1 11.5772 0.5044 7.2413 22 1 9.1525 0.5357 7.1981 23 6 5.5508 2.2917 -0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2124 2.3200 0.0005 28 1 1.3330 4.5113 0.0011 29 1 3.7909 4.6389 0.0024 30 1 4.6157 -0.1981 -1.0051 31 1 4.2362 -0.5795 0.6998 32 1 6.8845 -0.7909 -0.1156 33 1 6.9064 0.5470 -1.2895 34 1 9.0598 0.4661 -0.1276 35 1 8.1789 1.9271 0.3802 36 1 10.3135 0.4909 1.9730 37 1 9.4334 1.9523 2.4809 38 1 12.1336 1.6315 4.9644 39 1 6.0350 2.9689 0.7022 40 1 5.9544 2.4388 -1.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859940129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -65.247504 kcal Electronic energy + Delta-G solvation = -20869.761869 eV Core-core repulsion = 17649.314183 eV Total energy + Delta-G solvation = -3220.447686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70507 -39.80126 -38.52823 -37.25005 -34.93473 -33.02824 -31.73407 -30.15658 -28.81122 -28.41632 -27.89310 -24.88279 -24.40015 -22.46522 -22.37923 -21.85465 -18.65717 -18.59237 -17.67027 -17.31566 -16.95984 -16.84796 -16.51076 -16.36125 -16.07929 -15.61556 -15.41260 -14.87864 -14.29946 -14.23003 -13.92936 -13.90775 -13.59195 -13.25377 -13.18673 -12.91736 -12.80505 -12.71615 -12.42935 -12.24577 -12.19489 -11.93188 -11.89521 -11.70542 -11.25761 -10.84643 -10.17877 -10.02779 -9.24404 -9.09956 -8.30895 -6.42799 0.25161 0.43171 1.39636 1.44995 1.53313 2.36022 2.37887 2.69675 2.89374 3.02484 3.19231 3.42311 3.54025 4.01777 4.09786 4.12740 4.26725 4.28686 4.40064 4.40967 4.42714 4.48810 4.50818 4.56289 4.58604 4.74312 4.74692 4.78924 4.84629 4.94491 5.00563 5.20507 5.28585 5.42754 5.48624 5.56230 5.73798 5.84730 5.96933 6.01111 6.43527 6.57972 6.87612 7.29332 8.81370 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.003333 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.300981 B = 8399.335738 C = 8642.464123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.075 4.075 8 C -0.162 4.162 9 C 0.093 3.907 10 N -0.520 5.520 11 C 0.059 3.941 12 C 0.060 3.940 13 O -0.398 6.398 14 C 0.210 3.790 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.983 3.017 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.267 1.267 23 C 0.074 3.926 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.142 0.858 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.039 0.961 36 H -0.014 1.014 37 H -0.018 1.018 38 H 0.271 0.729 39 H 0.079 0.921 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.605 2.642 -13.419 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.087 3.913 4 C -0.226 4.226 5 C -0.092 4.092 6 C -0.164 4.164 7 C -0.075 4.075 8 C -0.163 4.163 9 C -0.035 4.035 10 N -0.244 5.244 11 C -0.069 4.069 12 C -0.017 4.017 13 O -0.318 6.318 14 C 0.135 3.865 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.053 4.053 24 H 0.134 0.866 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.159 0.841 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.004 0.996 37 H 0.000 1.000 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.378 2.337 -12.710 25.842 hybrid contribution 0.399 0.127 -0.151 0.445 sum -21.980 2.464 -12.862 25.585 Atomic orbital electron populations 1.23353 0.76352 1.05523 1.02386 1.86080 1.23595 1.26872 1.88628 1.18560 0.90131 0.85529 0.97037 1.21490 1.01218 0.91430 1.08435 1.21262 0.93746 0.98233 0.95998 1.20737 0.94202 0.97514 1.03994 1.20642 0.95273 0.93484 0.98133 1.19958 0.91740 0.96508 1.08099 1.21353 0.86874 0.95352 0.99878 1.65172 1.02188 1.02249 1.54774 1.22361 0.88270 1.00408 0.95854 1.22527 0.97222 0.97968 0.83985 1.87904 1.45088 1.75243 1.23556 1.19779 0.82819 0.92401 0.91501 1.21371 1.07746 1.33211 0.96287 0.92347 1.25957 0.94162 0.94921 1.04151 1.70062 1.10958 1.37930 1.38077 0.85245 0.78018 0.79015 0.77195 1.18961 1.19727 1.19219 1.21716 0.91862 0.91288 1.00424 0.86648 0.91743 0.91189 0.82374 0.82089 0.84062 0.91313 0.90640 0.89803 0.90024 0.92875 0.94321 0.99634 1.00007 0.92027 0.90256 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.71 10.48 -92.44 -0.97 -8.68 16 3 C 0.13 3.26 6.68 22.45 0.15 3.41 16 4 C -0.21 -3.84 9.04 22.37 0.20 -3.64 16 5 C -0.07 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.15 -3.15 10.04 22.27 0.22 -2.93 16 7 C -0.07 -2.02 6.27 -19.64 -0.12 -2.14 16 8 C -0.16 -4.59 6.22 -19.58 -0.12 -4.71 16 9 C 0.09 2.74 6.55 85.48 0.56 3.30 16 10 N -0.52 -17.42 5.39 -897.14 -4.83 -22.26 16 11 C 0.06 1.82 5.06 86.30 0.44 2.26 16 12 C 0.06 2.34 6.13 71.98 0.44 2.78 16 13 O -0.40 -20.72 10.27 -148.98 -1.53 -22.25 16 14 C 0.21 12.38 5.69 71.24 0.41 12.79 16 15 C -0.55 -34.25 9.43 25.60 0.24 -34.01 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.38 5.46 84.66 0.46 0.84 16 18 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 19 Si 0.98 45.95 29.54 68.60 2.03 47.97 16 20 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.07 2.15 5.89 85.49 0.50 2.66 16 24 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.07 0.62 7.66 -2.39 -0.02 0.61 16 27 H 0.16 1.88 6.30 -2.91 -0.02 1.87 16 28 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.07 1.77 7.81 -2.39 -0.02 1.75 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 33 H 0.08 1.94 7.68 -2.39 -0.02 1.92 16 34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.04 1.46 7.59 -2.39 -0.02 1.45 16 36 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 37 H -0.02 -1.10 8.14 -2.39 -0.02 -1.11 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 Total: -1.00 -75.33 333.98 0.71 -74.62 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.02 Total: 6.93 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.72 Total: -19.14 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -4.55 Total: -79.45 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -2.50 Total: -30.93 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.33 0.71 -74.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859940129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.373 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds