Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99563 * 2 1 4 4 H 1.09002 * 109.47588 * 354.36463 * 3 2 1 5 5 C 1.53003 * 109.47309 * 234.36211 * 3 2 1 6 6 N 1.46496 * 109.47045 * 59.74240 * 5 3 2 7 7 C 1.39677 * 120.00123 * 180.88682 * 6 5 3 8 8 C 1.39002 * 120.03716 * 359.97438 * 7 6 5 9 9 C 1.38159 * 120.05720 * 180.02562 * 8 7 6 10 10 C 1.38167 * 120.14584 * 359.71998 * 9 8 7 11 11 C 1.38922 * 120.07550 * 0.55798 * 10 9 8 12 12 O 1.35749 * 120.02823 * 179.71710 * 11 10 9 13 13 C 1.34830 * 116.99885 * 180.53873 * 12 11 10 14 14 H 1.08000 * 119.99950 * 5.62287 * 13 12 11 15 15 C 1.38651 * 120.00124 * 185.62154 * 13 12 11 16 16 N 1.31563 * 120.00141 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99958 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47454 * 90.00068 * 17 15 13 19 19 H 1.48497 * 109.47242 * 210.00081 * 17 15 13 20 20 H 1.48500 * 109.47278 * 329.99954 * 17 15 13 21 21 C 1.38750 * 120.03645 * 180.02562 * 7 6 5 22 22 C 1.53004 * 109.47334 * 114.36591 * 3 2 1 23 23 C 1.53004 * 117.49370 * 8.74063 * 22 3 2 24 24 C 1.53007 * 117.49378 * 300.08560 * 22 3 2 25 25 H 1.09004 * 109.47188 * 177.50569 * 1 2 3 26 26 H 1.09000 * 109.47320 * 297.50464 * 1 2 3 27 27 H 1.09000 * 109.47820 * 57.51030 * 1 2 3 28 28 H 1.09000 * 109.46818 * 299.74480 * 5 3 2 29 29 H 1.09006 * 109.47322 * 179.74450 * 5 3 2 30 30 H 0.97006 * 120.00390 * 0.88569 * 6 5 3 31 31 H 1.07997 * 119.97047 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.92354 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.96164 * 180.29779 * 10 9 8 34 34 H 0.97003 * 119.99968 * 180.02562 * 16 15 13 35 35 H 1.07992 * 120.07621 * 359.97438 * 21 7 6 36 36 H 1.08991 * 115.55279 * 154.41779 * 22 3 2 37 37 H 1.08995 * 117.50122 * 0.02562 * 23 22 3 38 38 H 1.09005 * 117.49125 * 145.02744 * 23 22 3 39 39 H 1.09000 * 117.49451 * 214.97997 * 24 22 3 40 40 H 1.08994 * 117.49912 * 359.97376 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2235 2.0534 -0.1009 5 6 2.9853 1.4297 -1.1724 6 7 2.2675 1.2092 -2.4302 7 6 2.9561 1.2542 -3.6445 8 6 4.3226 1.5087 -3.6605 9 6 5.0041 1.5538 -4.8614 10 6 4.3315 1.3407 -6.0494 11 6 2.9648 1.0916 -6.0406 12 8 2.3039 0.8879 -7.2087 13 6 0.9769 0.6626 -7.1300 14 1 0.4716 0.7398 -6.1786 15 6 0.2610 0.3317 -8.2703 16 7 -1.0339 0.1123 -8.1936 17 14 1.1351 0.1975 -9.9157 18 1 1.6110 -1.1955 -10.1113 19 1 0.1942 0.5569 -11.0069 20 1 2.2951 1.1245 -9.9371 21 6 2.2769 1.0460 -4.8363 22 6 2.7612 1.5295 1.3140 23 6 2.9338 0.3260 2.2429 24 6 1.9552 1.4438 2.6118 25 1 -0.3634 -1.0267 -0.0447 26 1 -0.3634 0.4746 0.9115 27 1 -0.3635 0.5520 -0.8668 28 1 3.7744 0.6848 -1.0689 29 1 3.4252 2.4270 -1.1750 30 1 1.3138 1.0319 -2.4198 31 1 4.8518 1.6721 -2.7333 32 1 6.0658 1.7513 -4.8713 33 1 4.8681 1.3719 -6.9861 34 1 -1.5347 -0.1195 -8.9914 35 1 1.2152 0.8485 -4.8268 36 1 3.5739 2.2545 1.2733 37 1 2.5127 -0.6253 1.9178 38 1 3.8602 0.2596 2.8136 39 1 2.2381 2.1123 3.4249 40 1 0.8900 1.2284 2.5294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877169062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -16.898318 kcal Electronic energy + Delta-G solvation = -20973.665723 eV Core-core repulsion = 17755.314615 eV Total energy + Delta-G solvation = -3218.351108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.55787 -38.96481 -37.03124 -36.06857 -34.55010 -32.28178 -30.67588 -28.98182 -27.76255 -26.33955 -25.12668 -23.55672 -22.52958 -21.76178 -20.56646 -20.38432 -17.86677 -17.55147 -16.79860 -16.44162 -15.98798 -15.20162 -15.07986 -14.58484 -14.37674 -14.00641 -13.89744 -13.62911 -13.44147 -13.32228 -12.97747 -12.27270 -12.18275 -12.01765 -11.92157 -11.71813 -11.53142 -11.31577 -10.86053 -10.80347 -10.63314 -10.55945 -10.20834 -10.16763 -9.73800 -9.42355 -9.35932 -8.77695 -7.41820 -6.79686 -6.35752 -4.02264 2.34277 2.51870 3.26415 3.30307 3.35529 3.45622 3.64532 3.82199 4.29526 4.51058 4.59959 4.67722 4.70278 4.93063 4.98234 5.00812 5.15869 5.18053 5.24261 5.28790 5.42832 5.53378 5.60827 5.66056 5.70514 5.79451 5.87925 5.97214 6.04967 6.18806 6.35851 6.55674 6.60967 6.98636 7.01811 7.26869 7.32727 7.57011 7.85088 7.96484 8.09775 8.23022 9.00685 9.65826 10.72247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.003752 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.286945 B = 7460.721147 C = 8445.494477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.107 3.893 4 H 0.072 0.928 5 C 0.130 3.870 6 N -0.749 5.749 7 C 0.251 3.749 8 C -0.273 4.273 9 C -0.040 4.040 10 C -0.239 4.239 11 C 0.196 3.804 12 O -0.218 6.218 13 C -0.386 4.386 14 H 0.105 0.895 15 C 0.062 3.938 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.291 4.291 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.179 4.179 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.394 0.606 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.278 0.722 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 2.708 18.626 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.049 3.951 4 H 0.090 0.910 5 C 0.005 3.995 6 N -0.380 5.380 7 C 0.149 3.851 8 C -0.295 4.295 9 C -0.059 4.059 10 C -0.259 4.259 11 C 0.143 3.857 12 O -0.123 6.123 13 C -0.461 4.461 14 H 0.122 0.878 15 C -0.141 4.141 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.183 1.183 21 C -0.315 4.315 22 C -0.189 4.189 23 C -0.199 4.199 24 C -0.216 4.216 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.051 2.517 18.409 19.541 hybrid contribution -0.509 0.052 -0.569 0.765 sum 5.542 2.568 17.840 18.857 Atomic orbital electron populations 1.22908 0.81024 1.03116 0.99850 1.87969 1.19504 1.26930 1.94740 1.21811 0.95198 0.85442 0.92650 0.91049 1.21412 0.94835 1.00759 0.82518 1.44391 1.10219 1.80899 1.02505 1.17477 0.91026 0.91841 0.84780 1.20131 0.92748 1.19034 0.97630 1.20369 0.98026 0.96076 0.91469 1.20012 0.92066 1.15666 0.98186 1.18806 0.90882 0.90907 0.85113 1.83592 1.23106 1.78693 1.26913 1.20748 0.78997 1.47945 0.98450 0.87783 1.24462 0.94986 0.95568 0.99063 1.69652 1.06094 1.45780 1.30689 0.86185 0.79777 0.79415 0.81554 1.19950 1.20907 1.18306 1.20604 1.01214 1.19044 0.90655 1.22618 1.02809 1.02942 0.90549 1.22900 1.00712 0.94498 1.01768 1.22947 0.97787 1.02928 0.97962 0.89417 0.94242 0.93695 0.91699 0.91677 0.77183 0.87684 0.87051 0.86959 0.91200 0.85276 0.86779 0.87560 0.89086 0.88854 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 101.05 1.08 1.34 16 2 O -0.37 -4.35 8.44 -35.23 -0.30 -4.65 16 3 C 0.11 1.12 2.68 -26.73 -0.07 1.05 16 4 H 0.07 0.71 7.61 -51.93 -0.40 0.31 16 5 C 0.13 1.61 4.59 -4.04 -0.02 1.59 16 6 N -0.75 -11.71 5.62 -58.65 -0.33 -12.04 16 7 C 0.25 4.78 6.65 -83.81 -0.56 4.23 16 8 C -0.27 -4.83 9.31 -39.33 -0.37 -5.20 16 9 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 10 C -0.24 -4.98 9.99 -39.35 -0.39 -5.37 16 11 C 0.20 4.72 6.65 -39.13 -0.26 4.46 16 12 O -0.22 -5.94 8.58 0.05 0.00 -5.94 16 13 C -0.39 -11.11 9.93 30.88 0.31 -10.81 16 14 H 0.10 3.07 5.45 -52.49 -0.29 2.78 16 15 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 16 N -0.88 -25.87 13.96 55.48 0.77 -25.09 16 17 Si 0.91 22.11 28.62 -169.99 -4.86 17.24 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.29 -6.56 9.00 -39.20 -0.35 -6.92 16 22 C -0.17 -1.51 5.71 -90.61 -0.52 -2.03 16 23 C -0.16 -1.41 9.88 -26.69 -0.26 -1.68 16 24 C -0.18 -1.42 10.19 -26.69 -0.27 -1.69 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.31 7.32 -51.93 -0.38 -0.07 16 27 H 0.04 0.43 7.90 -51.93 -0.41 0.02 16 28 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 29 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 30 H 0.39 6.01 8.12 -40.82 -0.33 5.67 16 31 H 0.11 1.60 6.72 -52.49 -0.35 1.24 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.13 3.06 5.63 -52.49 -0.30 2.77 16 36 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.11 1.06 7.06 -51.93 -0.37 0.70 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.72 7.32 -51.93 -0.38 0.34 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.75 333.35 -7.56 -38.31 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.69 Total: 7.62 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.18 Total: -20.48 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.45 Total: -37.14 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.30 Total: -10.59 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.75 -7.56 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877169062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.417 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds