Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99563 * 2 1 4 4 H 1.09002 * 109.47588 * 354.36463 * 3 2 1 5 5 C 1.53003 * 109.47309 * 234.36211 * 3 2 1 6 6 N 1.46496 * 109.47045 * 59.74240 * 5 3 2 7 7 C 1.39677 * 120.00123 * 180.88682 * 6 5 3 8 8 C 1.39002 * 120.03716 * 359.97438 * 7 6 5 9 9 C 1.38159 * 120.05720 * 180.02562 * 8 7 6 10 10 C 1.38167 * 120.14584 * 359.71998 * 9 8 7 11 11 C 1.38922 * 120.07550 * 0.55798 * 10 9 8 12 12 O 1.35749 * 120.02823 * 179.71710 * 11 10 9 13 13 C 1.34830 * 116.99885 * 180.53873 * 12 11 10 14 14 H 1.08000 * 119.99950 * 5.62287 * 13 12 11 15 15 C 1.38651 * 120.00124 * 185.62154 * 13 12 11 16 16 N 1.31563 * 120.00141 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99958 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47454 * 90.00068 * 17 15 13 19 19 H 1.48497 * 109.47242 * 210.00081 * 17 15 13 20 20 H 1.48500 * 109.47278 * 329.99954 * 17 15 13 21 21 C 1.38750 * 120.03645 * 180.02562 * 7 6 5 22 22 C 1.53004 * 109.47334 * 114.36591 * 3 2 1 23 23 C 1.53004 * 117.49370 * 8.74063 * 22 3 2 24 24 C 1.53007 * 117.49378 * 300.08560 * 22 3 2 25 25 H 1.09004 * 109.47188 * 177.50569 * 1 2 3 26 26 H 1.09000 * 109.47320 * 297.50464 * 1 2 3 27 27 H 1.09000 * 109.47820 * 57.51030 * 1 2 3 28 28 H 1.09000 * 109.46818 * 299.74480 * 5 3 2 29 29 H 1.09006 * 109.47322 * 179.74450 * 5 3 2 30 30 H 0.97006 * 120.00390 * 0.88569 * 6 5 3 31 31 H 1.07997 * 119.97047 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.92354 * 180.02562 * 9 8 7 33 33 H 1.07997 * 119.96164 * 180.29779 * 10 9 8 34 34 H 0.97003 * 119.99968 * 180.02562 * 16 15 13 35 35 H 1.07992 * 120.07621 * 359.97438 * 21 7 6 36 36 H 1.08991 * 115.55279 * 154.41779 * 22 3 2 37 37 H 1.08995 * 117.50122 * 0.02562 * 23 22 3 38 38 H 1.09005 * 117.49125 * 145.02744 * 23 22 3 39 39 H 1.09000 * 117.49451 * 214.97997 * 24 22 3 40 40 H 1.08994 * 117.49912 * 359.97376 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2235 2.0534 -0.1009 5 6 2.9853 1.4297 -1.1724 6 7 2.2675 1.2092 -2.4302 7 6 2.9561 1.2542 -3.6445 8 6 4.3226 1.5087 -3.6605 9 6 5.0041 1.5538 -4.8614 10 6 4.3315 1.3407 -6.0494 11 6 2.9648 1.0916 -6.0406 12 8 2.3039 0.8879 -7.2087 13 6 0.9769 0.6626 -7.1300 14 1 0.4716 0.7398 -6.1786 15 6 0.2610 0.3317 -8.2703 16 7 -1.0339 0.1123 -8.1936 17 14 1.1351 0.1975 -9.9157 18 1 1.6110 -1.1955 -10.1113 19 1 0.1942 0.5569 -11.0069 20 1 2.2951 1.1245 -9.9371 21 6 2.2769 1.0460 -4.8363 22 6 2.7612 1.5295 1.3140 23 6 2.9338 0.3260 2.2429 24 6 1.9552 1.4438 2.6118 25 1 -0.3634 -1.0267 -0.0447 26 1 -0.3634 0.4746 0.9115 27 1 -0.3635 0.5520 -0.8668 28 1 3.7744 0.6848 -1.0689 29 1 3.4252 2.4270 -1.1750 30 1 1.3138 1.0319 -2.4198 31 1 4.8518 1.6721 -2.7333 32 1 6.0658 1.7513 -4.8713 33 1 4.8681 1.3719 -6.9861 34 1 -1.5347 -0.1195 -8.9914 35 1 1.2152 0.8485 -4.8268 36 1 3.5739 2.2545 1.2733 37 1 2.5127 -0.6253 1.9178 38 1 3.8602 0.2596 2.8136 39 1 2.2381 2.1123 3.4249 40 1 0.8900 1.2284 2.5294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877169062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -35.917882 kcal Electronic energy + Delta-G solvation = -20974.490473 eV Core-core repulsion = 17755.314615 eV Total energy + Delta-G solvation = -3219.175858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91912 -40.18683 -38.65290 -36.81545 -35.93232 -34.38273 -31.90835 -30.58989 -29.08298 -27.26162 -27.09037 -24.61056 -23.36508 -23.17444 -21.95316 -21.37053 -19.81984 -19.14338 -17.80936 -17.46918 -17.06176 -16.79699 -16.40081 -15.95529 -15.69228 -15.52252 -15.28459 -15.05607 -14.79748 -14.60265 -14.21192 -14.08410 -13.81371 -13.18368 -13.07419 -12.74218 -12.57805 -12.49832 -12.30662 -12.26726 -12.11507 -11.96434 -11.40340 -11.28319 -11.02991 -10.90377 -10.67710 -10.54307 -9.17440 -8.48873 -8.26051 -6.21265 0.73993 0.88729 1.31677 1.36798 1.53256 2.29477 2.45714 2.61637 2.82411 3.05570 3.17738 3.23962 3.69384 3.87316 3.96905 4.20312 4.22708 4.24767 4.38608 4.42077 4.46770 4.51067 4.59317 4.64793 4.75022 4.77782 4.83805 4.86467 5.00510 5.03636 5.09006 5.24860 5.37246 5.43828 5.46545 5.75573 5.84164 5.90417 6.16326 6.18761 6.57625 6.77397 6.86278 7.63312 8.62977 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.003752 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.286945 B = 7460.721147 C = 8445.494477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.109 3.891 4 H 0.076 0.924 5 C 0.127 3.873 6 N -0.744 5.744 7 C 0.251 3.749 8 C -0.258 4.258 9 C -0.025 4.025 10 C -0.251 4.251 11 C 0.159 3.841 12 O -0.245 6.245 13 C -0.397 4.397 14 H 0.077 0.923 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.267 1.267 19 H -0.266 1.266 20 H -0.262 1.262 21 C -0.314 4.314 22 C -0.173 4.173 23 C -0.168 4.168 24 C -0.171 4.171 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.393 0.607 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.284 0.716 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.605 3.587 20.328 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.051 3.949 4 H 0.094 0.906 5 C 0.003 3.997 6 N -0.373 5.373 7 C 0.147 3.853 8 C -0.281 4.281 9 C -0.044 4.044 10 C -0.272 4.272 11 C 0.109 3.891 12 O -0.152 6.152 13 C -0.473 4.473 14 H 0.095 0.905 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.338 4.338 22 C -0.192 4.192 23 C -0.205 4.205 24 C -0.208 4.208 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.227 0.773 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.726 3.402 20.180 22.248 hybrid contribution -1.217 -0.181 -0.765 1.449 sum 7.509 3.222 19.415 21.064 Atomic orbital electron populations 1.22997 0.80243 1.03508 1.00456 1.87944 1.20480 1.27809 1.94866 1.21826 0.95102 0.85131 0.92852 0.90612 1.21669 0.95070 1.01628 0.81355 1.44590 1.10415 1.79614 1.02728 1.17615 0.91956 0.90960 0.84780 1.20623 0.91854 1.16256 0.99319 1.20898 1.00122 0.93342 0.90025 1.20318 0.90677 1.16011 1.00171 1.19402 0.92412 0.92488 0.84794 1.83530 1.21946 1.81099 1.28605 1.20681 0.80253 1.48514 0.97854 0.90520 1.25291 0.95709 0.95328 1.02583 1.69734 1.07383 1.47514 1.31978 0.85206 0.78619 0.79479 0.77341 1.19154 1.19102 1.18656 1.20565 1.00196 1.20885 0.92162 1.22629 1.03381 1.03388 0.89812 1.22900 1.01545 0.93899 1.02149 1.23015 0.97528 1.02467 0.97754 0.89152 0.92455 0.94336 0.91798 0.89775 0.77326 0.83918 0.82323 0.85968 0.90646 0.88107 0.85225 0.89238 0.87859 0.87242 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.70 113.37 1.21 1.66 16 2 O -0.39 -8.78 8.44 -148.98 -1.26 -10.04 16 3 C 0.11 2.07 2.68 30.60 0.08 2.15 16 4 H 0.08 1.37 7.61 -2.39 -0.02 1.35 16 5 C 0.13 2.80 4.59 86.38 0.40 3.19 16 6 N -0.74 -22.53 5.62 -339.47 -1.91 -24.44 16 7 C 0.25 9.34 6.65 38.20 0.25 9.60 16 8 C -0.26 -8.20 9.31 22.43 0.21 -7.99 16 9 C -0.03 -0.81 10.03 22.23 0.22 -0.59 16 10 C -0.25 -10.16 9.99 22.42 0.22 -9.94 16 11 C 0.16 7.87 6.65 22.56 0.15 8.02 16 12 O -0.24 -13.89 8.58 -22.73 -0.20 -14.08 16 13 C -0.40 -24.22 9.93 67.92 0.67 -23.55 16 14 H 0.08 4.93 5.45 -2.91 -0.02 4.92 16 15 C 0.01 0.52 5.49 84.83 0.47 0.99 16 16 N -0.92 -56.40 13.96 21.61 0.30 -56.09 16 17 Si 0.97 46.68 28.62 68.60 1.96 48.64 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 21 C -0.31 -14.71 9.00 22.52 0.20 -14.50 16 22 C -0.17 -2.59 5.71 -10.79 -0.06 -2.65 16 23 C -0.17 -2.57 9.88 30.62 0.30 -2.27 16 24 C -0.17 -2.26 10.19 30.62 0.31 -1.95 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 0.85 7.32 -2.39 -0.02 0.83 16 27 H 0.04 0.75 7.90 -2.39 -0.02 0.73 16 28 H 0.06 1.47 7.91 -2.39 -0.02 1.45 16 29 H 0.08 1.59 7.99 -2.38 -0.02 1.57 16 30 H 0.39 12.12 8.12 -92.70 -0.75 11.37 16 31 H 0.14 3.52 6.72 -2.91 -0.02 3.50 16 32 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.10 5.22 5.63 -2.91 -0.02 5.20 16 36 H 0.13 1.54 8.11 -2.39 -0.02 1.52 16 37 H 0.09 1.69 7.06 -2.39 -0.02 1.67 16 38 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.21 7.32 -2.39 -0.02 1.20 16 Total: -1.00 -69.83 333.35 3.85 -65.98 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.29 Total: 27.85 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 4.65 Total: -37.82 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.61 Total: -80.53 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.45 Total: -24.12 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.64 kcal Total: -69.83 3.85 -65.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877169062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.063 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds