Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34221 * 117.00177 * 2 1 4 4 O 1.20825 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00327 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47454 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.46968 * 180.02562 * 6 5 3 8 8 C 1.36945 * 119.99614 * 275.30582 * 7 6 5 9 9 H 1.07992 * 119.99985 * 37.58181 * 8 7 6 10 10 C 1.38818 * 119.99951 * 217.58184 * 8 7 6 11 11 N 1.31616 * 119.99529 * 21.42265 * 10 8 7 12 12 Si 1.86791 * 119.99924 * 201.42630 * 10 8 7 13 13 H 1.48500 * 109.47403 * 59.99761 * 12 10 8 14 14 H 1.48501 * 109.47086 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47265 * 299.99589 * 12 10 8 16 16 C 1.46494 * 120.00498 * 95.30950 * 7 6 5 17 17 C 1.52999 * 109.47098 * 269.99923 * 16 7 6 18 18 C 1.50706 * 109.47096 * 179.97438 * 17 16 7 19 19 C 1.38236 * 119.99846 * 90.00208 * 18 17 16 20 20 C 1.38235 * 120.00131 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99769 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00007 * 0.27529 * 21 20 19 23 23 C 1.38229 * 119.99830 * 269.97350 * 18 17 16 24 24 H 1.08999 * 109.46925 * 300.00603 * 1 2 3 25 25 H 1.09000 * 109.46524 * 60.00373 * 1 2 3 26 26 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47176 * 59.99040 * 5 3 2 28 28 H 1.09004 * 109.46610 * 299.99772 * 5 3 2 29 29 H 1.08997 * 109.47064 * 59.99495 * 6 5 3 30 30 H 1.09002 * 109.46714 * 299.99550 * 6 5 3 31 31 H 0.97007 * 119.99416 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.47460 * 149.99670 * 16 7 6 33 33 H 1.09007 * 109.47099 * 29.99577 * 16 7 6 34 34 H 1.09003 * 109.47171 * 59.99571 * 17 16 7 35 35 H 1.09003 * 109.47153 * 299.99413 * 17 16 7 36 36 H 1.08003 * 120.00185 * 359.97123 * 19 18 17 37 37 H 1.07999 * 119.99811 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00076 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.00364 * 179.72701 * 22 21 20 40 40 H 1.07997 * 120.00537 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0023 8 6 6.1536 2.7450 1.1781 9 1 5.8165 2.0811 1.9603 10 6 7.2867 3.5239 1.3692 11 7 7.4701 4.6075 0.6450 12 14 8.5510 3.0339 2.6539 13 1 9.0906 1.6889 2.3297 14 1 9.6582 4.0235 2.6614 15 1 7.9091 3.0002 3.9925 16 6 6.1876 2.9740 -1.2661 17 6 6.5148 1.5937 -1.8394 18 6 7.2595 1.7536 -3.1398 19 6 8.6400 1.8260 -3.1413 20 6 9.3231 1.9721 -4.3341 21 6 8.6259 2.0452 -5.5255 22 6 7.2452 1.9779 -5.5235 23 6 6.5622 1.8271 -4.3310 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9558 0.7807 -0.8908 28 1 3.9564 0.7805 0.8892 29 1 3.6108 3.2364 0.8888 30 1 3.6102 3.2358 -0.8911 31 1 8.2621 5.1515 0.7783 32 1 7.1128 3.5227 -1.0895 33 1 5.5684 3.5242 -1.9746 34 1 5.5897 1.0450 -2.0159 35 1 7.1341 1.0435 -1.1309 36 1 9.1848 1.7686 -2.2106 37 1 10.4016 2.0291 -4.3352 38 1 9.1596 2.1589 -6.4575 39 1 6.7001 2.0395 -6.4538 40 1 5.4837 1.7705 -4.3299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = -52.500003 kcal Electronic energy + Delta-G solvation = -21226.561321 eV Core-core repulsion = 18006.666408 eV Total energy + Delta-G solvation = -3219.894913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11671 -38.88028 -36.56540 -35.86554 -32.65731 -32.11758 -30.52364 -29.94586 -27.86536 -27.16064 -24.66975 -23.23970 -22.18586 -21.21282 -20.12884 -19.93981 -17.35071 -16.72244 -16.38236 -16.21466 -16.12826 -14.95938 -14.80077 -14.61286 -14.08131 -13.73433 -13.29410 -13.21137 -13.04297 -12.76504 -12.44031 -12.27140 -12.16451 -11.79928 -11.74097 -11.19672 -10.92013 -10.79777 -10.74277 -10.66631 -10.64681 -10.55020 -10.14889 -10.09063 -9.75501 -9.58938 -8.57997 -8.52366 -8.27301 -6.65398 -5.84370 -3.44245 1.74707 1.76131 2.56198 3.02110 3.34082 3.40536 3.42018 4.16404 4.43732 5.09852 5.15718 5.21491 5.22139 5.22832 5.26531 5.34829 5.45686 5.56348 5.64815 5.71796 5.85416 5.87547 5.99424 6.10644 6.22751 6.37551 6.42657 6.53208 6.60317 6.66724 6.73556 6.81457 6.84973 6.95189 7.01804 7.24281 7.41138 7.68296 7.77432 8.07756 8.45961 9.12632 9.73693 10.31571 11.15873 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.006295 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.438723 B = 4446.739475 C = 6734.266049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.513 6.513 5 C -0.134 4.134 6 C 0.159 3.841 7 N -0.578 5.578 8 C -0.270 4.270 9 H 0.062 0.938 10 C 0.018 3.982 11 N -0.882 5.882 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.153 3.847 17 C -0.105 4.105 18 C -0.057 4.057 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.257 0.743 32 H 0.098 0.902 33 H 0.026 0.974 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -8.269 -7.854 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.400 6.400 5 C -0.174 4.174 6 C 0.031 3.969 7 N -0.296 5.296 8 C -0.400 4.400 9 H 0.080 0.920 10 C -0.183 4.183 11 N -0.523 5.523 12 Si 0.725 3.275 13 H -0.207 1.207 14 H -0.216 1.216 15 H -0.206 1.206 16 C 0.026 3.974 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.158 4.158 22 C -0.141 4.141 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.127 -7.783 -7.823 11.782 hybrid contribution 0.485 -0.254 0.589 0.804 sum -3.642 -8.038 -7.234 11.411 Atomic orbital electron populations 1.23164 0.77505 1.03038 1.02250 1.86570 1.22680 1.34679 1.84517 1.24477 0.92817 0.80765 0.71425 1.90628 1.67479 1.36349 1.45561 1.22471 0.84554 1.05238 1.05179 1.20654 0.85986 0.89552 1.00676 1.43798 0.98882 1.84029 1.02928 1.18962 1.08188 1.18602 0.94229 0.92047 1.25189 1.00910 0.94284 0.97944 1.70004 1.27711 1.12473 1.42108 0.86484 0.81320 0.77993 0.81670 1.20738 1.21565 1.20623 1.20972 0.99482 0.91710 0.85199 1.21455 0.98388 1.02445 0.92142 1.20191 0.93806 0.96166 0.95623 1.21138 0.94187 1.00123 0.97954 1.21092 0.99473 1.00501 0.92780 1.20988 0.94400 1.02767 0.97686 1.21046 0.94412 1.00877 0.97717 1.21048 0.99619 1.01410 0.92193 0.92201 0.92248 0.88666 0.88575 0.87961 0.92610 0.93622 0.93336 0.88429 0.95583 0.92787 0.91089 0.86101 0.86689 0.86895 0.86787 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.42 10.57 -39.24 -0.41 -5.84 16 3 C 0.46 7.83 7.96 36.01 0.29 8.11 16 4 O -0.51 -9.92 15.73 -18.75 -0.29 -10.22 16 5 C -0.13 -2.31 6.11 -27.88 -0.17 -2.48 16 6 C 0.16 3.32 5.01 -4.04 -0.02 3.30 16 7 N -0.58 -13.63 2.43 -173.24 -0.42 -14.05 16 8 C -0.27 -7.00 9.45 -15.05 -0.14 -7.14 16 9 H 0.06 1.57 7.92 -52.49 -0.42 1.16 16 10 C 0.02 0.48 4.95 -17.43 -0.09 0.39 16 11 N -0.88 -24.67 11.47 55.49 0.64 -24.03 16 12 Si 0.90 20.80 29.60 -169.99 -5.03 15.77 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 C 0.15 3.42 5.31 -4.05 -0.02 3.40 16 17 C -0.10 -1.97 5.67 -27.88 -0.16 -2.13 16 18 C -0.06 -0.99 5.13 -104.62 -0.54 -1.53 16 19 C -0.12 -1.94 9.70 -39.58 -0.38 -2.33 16 20 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 21 C -0.14 -1.91 10.05 -39.59 -0.40 -2.30 16 22 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 23 C -0.12 -1.93 9.70 -39.58 -0.38 -2.32 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.55 6.64 -51.93 -0.34 1.20 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 30 H 0.05 0.95 7.79 -51.93 -0.40 0.54 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.10 2.51 5.52 -51.93 -0.29 2.22 16 33 H 0.03 0.57 7.86 -51.92 -0.41 0.17 16 34 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 35 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 36 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -29.49 340.40 -8.12 -37.61 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.98 Total: 3.46 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.74 Total: -7.83 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.21 Total: -38.08 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.71 Total: -16.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.49 -8.12 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.891 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds