Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 H 1.08998 * 109.50490 * 159.88729 * 7 6 5 9 9 C 1.53093 * 109.50284 * 279.97556 * 7 6 5 10 10 N 1.47016 * 109.25650 * 176.78384 * 9 7 6 11 11 C 1.46899 * 111.00281 * 177.60728 * 10 9 7 12 12 C 1.50697 * 109.47286 * 189.99717 * 11 10 9 13 13 H 1.07997 * 120.00319 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99753 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99838 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47045 * 89.99753 * 16 14 12 18 18 H 1.48494 * 109.47240 * 210.00169 * 16 14 12 19 19 H 1.48506 * 109.47259 * 330.00024 * 16 14 12 20 20 C 1.47015 * 110.75107 * 301.38278 * 10 9 7 21 21 C 1.53093 * 109.25802 * 58.61753 * 20 10 9 22 22 O 1.43014 * 109.50330 * 39.75778 * 7 6 5 23 23 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 24 24 C 1.38139 * 120.05510 * 0.02562 * 23 6 5 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 28 28 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 30 30 H 1.08999 * 109.51200 * 296.71555 * 9 7 6 31 31 H 1.09006 * 109.51048 * 56.84896 * 9 7 6 32 32 H 1.08998 * 109.47272 * 310.00125 * 11 10 9 33 33 H 1.09005 * 109.47197 * 69.99823 * 11 10 9 34 34 H 0.97008 * 120.00005 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.50936 * 178.55160 * 20 10 9 36 36 H 1.08998 * 109.50931 * 298.63551 * 20 10 9 37 37 H 1.09003 * 109.51243 * 63.08434 * 21 20 10 38 38 H 1.09004 * 109.50832 * 183.21533 * 21 20 10 39 39 H 1.08008 * 119.96969 * 180.02562 * 23 6 5 40 40 H 1.08001 * 120.02451 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 1 5.0109 4.9049 0.3522 9 6 3.9953 5.5875 -1.4224 10 7 4.5943 6.9300 -1.4034 11 6 4.6743 7.4901 -2.7590 12 6 5.5070 8.7458 -2.7355 13 1 5.9338 9.0934 -1.8063 14 6 5.7232 9.4516 -3.9001 15 7 5.2031 9.0287 -5.0314 16 14 6.7560 11.0078 -3.8710 17 1 8.1802 10.6613 -4.1097 18 1 6.2869 11.9332 -4.9334 19 1 6.6221 11.6662 -2.5466 20 6 3.8440 7.8226 -0.5080 21 6 3.8363 7.2312 0.9041 22 8 3.2794 5.9146 0.8611 23 6 4.0560 2.5170 -0.0005 24 6 3.4313 1.2849 -0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2129 2.3201 -0.0099 29 1 1.3341 4.5114 -0.0014 30 1 4.5813 4.9367 -2.0712 31 1 2.9732 5.6503 -1.7960 32 1 5.1343 6.7615 -3.4266 33 1 3.6712 7.7259 -3.1145 34 1 5.3554 9.5251 -5.8509 35 1 4.3196 8.8031 -0.4893 36 1 2.8198 7.9217 -0.8674 37 1 4.8568 7.1826 1.2840 38 1 3.2331 7.8603 1.5588 39 1 5.1345 2.5751 -0.0001 40 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879632034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -50.897526 kcal Electronic energy + Delta-G solvation = -21239.109551 eV Core-core repulsion = 18019.284127 eV Total energy + Delta-G solvation = -3219.825424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29916 -39.14775 -37.32422 -35.15524 -32.50441 -32.08497 -31.09199 -29.11294 -28.12523 -27.28757 -25.11301 -23.55943 -22.81719 -22.08526 -20.81635 -19.66538 -18.25329 -16.53386 -16.34913 -16.25577 -15.88444 -15.57263 -14.95409 -14.51939 -14.48478 -14.30591 -13.92638 -13.68189 -13.52453 -13.12883 -12.88993 -12.70692 -12.12706 -12.07214 -11.69209 -11.36621 -11.16203 -10.95579 -10.91882 -10.81521 -10.77296 -10.56552 -10.22293 -9.91385 -9.40317 -9.07076 -8.99735 -8.46756 -8.10712 -7.34839 -6.06004 -4.07988 1.32123 1.39499 3.13198 3.30092 3.36053 3.39113 3.67403 4.08347 4.38761 4.72496 4.78047 4.82971 4.93161 4.96368 5.12752 5.22872 5.29219 5.33231 5.38822 5.48784 5.52275 5.63377 5.69212 5.77807 5.90657 5.98624 6.04175 6.22557 6.30395 6.38724 6.45069 6.56502 6.68081 6.72020 7.19456 7.27929 7.28936 7.51278 7.73804 8.01065 8.11173 8.47344 8.99074 9.56377 11.04876 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003446 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.887077 B = 8124.293714 C = 8476.188557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.052 4.052 6 C -0.109 4.109 7 C 0.139 3.861 8 H 0.072 0.928 9 C 0.031 3.969 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.027 3.973 21 C 0.064 3.936 22 O -0.386 6.386 23 C -0.068 4.068 24 C -0.153 4.153 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.031 0.969 33 H -0.008 1.008 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 -14.191 11.338 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.070 4.070 6 C -0.110 4.110 7 C 0.081 3.919 8 H 0.090 0.910 9 C -0.098 4.098 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.101 4.101 21 C -0.013 4.013 22 O -0.305 6.305 23 C -0.086 4.086 24 C -0.172 4.172 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.453 -14.424 11.417 19.848 hybrid contribution -0.374 1.205 -0.725 1.455 sum -7.826 -13.219 10.693 18.717 Atomic orbital electron populations 1.23031 0.78569 1.03703 1.01437 1.86047 1.21272 1.27169 1.88919 1.19044 0.92413 0.84001 0.96878 1.21219 0.99912 0.92300 1.09519 1.20818 0.94145 0.97052 0.94952 1.19589 0.93861 0.93809 1.03722 1.20841 0.94499 0.86056 0.90475 0.91037 1.22663 0.98280 0.93277 0.95532 1.62370 1.49295 1.00559 1.13812 1.19738 0.95805 0.95127 0.82456 1.21133 1.31366 1.07798 0.94478 0.91838 1.24997 0.96122 0.98075 0.95409 1.69959 1.44958 1.39845 0.98958 0.86483 0.80431 0.82719 0.77680 1.20583 1.21304 1.19843 1.22628 0.96675 0.98462 0.92383 1.22737 0.98627 0.82902 0.97005 1.87893 1.55333 1.21492 1.65788 1.20807 1.00012 0.90665 0.97128 1.20331 0.91271 0.98418 1.07162 0.88418 0.92701 0.92622 0.85608 0.85336 0.90353 0.95017 0.95061 0.99020 0.92864 0.88899 0.95253 0.92632 0.89146 0.84994 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.64 10.50 -19.44 -0.20 -3.85 16 3 C 0.12 1.51 6.69 -39.22 -0.26 1.25 16 4 C -0.21 -2.57 9.04 -39.44 -0.36 -2.93 16 5 C -0.05 -0.71 9.35 -39.61 -0.37 -1.08 16 6 C -0.11 -1.57 4.98 -104.60 -0.52 -2.09 16 7 C 0.14 2.24 3.01 -27.83 -0.08 2.16 16 8 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 9 C 0.03 0.59 4.91 -3.71 -0.02 0.57 16 10 N -0.54 -11.66 4.72 -235.75 -1.11 -12.77 16 11 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 12 C -0.51 -14.21 8.49 -34.44 -0.29 -14.50 16 13 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.03 0.53 5.46 -3.71 -0.02 0.51 16 21 C 0.06 1.02 7.01 37.21 0.26 1.28 16 22 O -0.39 -6.44 9.78 -35.23 -0.34 -6.79 16 23 C -0.07 -0.86 9.66 -39.61 -0.38 -1.25 16 24 C -0.15 -1.87 9.99 -39.44 -0.39 -2.26 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 28 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 29 H 0.13 1.78 7.77 -52.48 -0.41 1.37 16 30 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.87 8.04 -51.93 -0.42 0.46 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.09 1.89 6.83 -51.93 -0.35 1.54 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.13 1.42 8.04 -52.48 -0.42 1.00 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -31.24 328.42 -8.60 -39.84 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.03 Total: -1.32 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.57 Total: -10.62 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.38 Total: -38.68 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.55 Total: -10.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.24 -8.60 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879632034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.059 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds