Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 H 1.08998 * 109.50490 * 159.88729 * 7 6 5 9 9 C 1.53093 * 109.50284 * 279.97556 * 7 6 5 10 10 N 1.47016 * 109.25650 * 176.78384 * 9 7 6 11 11 C 1.46899 * 111.00281 * 177.60728 * 10 9 7 12 12 C 1.50697 * 109.47286 * 189.99717 * 11 10 9 13 13 H 1.07997 * 120.00319 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99753 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99838 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47045 * 89.99753 * 16 14 12 18 18 H 1.48494 * 109.47240 * 210.00169 * 16 14 12 19 19 H 1.48506 * 109.47259 * 330.00024 * 16 14 12 20 20 C 1.47015 * 110.75107 * 301.38278 * 10 9 7 21 21 C 1.53093 * 109.25802 * 58.61753 * 20 10 9 22 22 O 1.43014 * 109.50330 * 39.75778 * 7 6 5 23 23 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 24 24 C 1.38139 * 120.05510 * 0.02562 * 23 6 5 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 28 28 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 30 30 H 1.08999 * 109.51200 * 296.71555 * 9 7 6 31 31 H 1.09006 * 109.51048 * 56.84896 * 9 7 6 32 32 H 1.08998 * 109.47272 * 310.00125 * 11 10 9 33 33 H 1.09005 * 109.47197 * 69.99823 * 11 10 9 34 34 H 0.97008 * 120.00005 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.50936 * 178.55160 * 20 10 9 36 36 H 1.08998 * 109.50931 * 298.63551 * 20 10 9 37 37 H 1.09003 * 109.51243 * 63.08434 * 21 20 10 38 38 H 1.09004 * 109.50832 * 183.21533 * 21 20 10 39 39 H 1.08008 * 119.96969 * 180.02562 * 23 6 5 40 40 H 1.08001 * 120.02451 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 1 5.0109 4.9049 0.3522 9 6 3.9953 5.5875 -1.4224 10 7 4.5943 6.9300 -1.4034 11 6 4.6743 7.4901 -2.7590 12 6 5.5070 8.7458 -2.7355 13 1 5.9338 9.0934 -1.8063 14 6 5.7232 9.4516 -3.9001 15 7 5.2031 9.0287 -5.0314 16 14 6.7560 11.0078 -3.8710 17 1 8.1802 10.6613 -4.1097 18 1 6.2869 11.9332 -4.9334 19 1 6.6221 11.6662 -2.5466 20 6 3.8440 7.8226 -0.5080 21 6 3.8363 7.2312 0.9041 22 8 3.2794 5.9146 0.8611 23 6 4.0560 2.5170 -0.0005 24 6 3.4313 1.2849 -0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2129 2.3201 -0.0099 29 1 1.3341 4.5114 -0.0014 30 1 4.5813 4.9367 -2.0712 31 1 2.9732 5.6503 -1.7960 32 1 5.1343 6.7615 -3.4266 33 1 3.6712 7.7259 -3.1145 34 1 5.3554 9.5251 -5.8509 35 1 4.3196 8.8031 -0.4893 36 1 2.8198 7.9217 -0.8674 37 1 4.8568 7.1826 1.2840 38 1 3.2331 7.8603 1.5588 39 1 5.1345 2.5751 -0.0001 40 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879632034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = -71.455746 kcal Electronic energy + Delta-G solvation = -21240.001022 eV Core-core repulsion = 18019.284127 eV Total energy + Delta-G solvation = -3220.716895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31423 -40.41523 -38.34943 -36.82680 -34.57411 -33.30899 -32.05232 -30.39779 -29.83409 -28.17606 -26.77497 -24.95640 -24.14199 -23.47064 -22.07987 -21.16728 -19.12682 -18.56170 -17.58193 -17.51108 -16.92180 -16.62803 -16.44557 -16.09884 -15.92437 -15.55472 -15.50161 -14.85735 -14.54825 -14.49634 -14.17708 -14.07759 -13.58812 -13.33946 -12.95418 -12.80390 -12.74078 -12.64929 -12.46491 -12.19725 -12.06194 -11.94336 -11.76451 -11.43922 -11.37823 -10.65457 -10.55498 -9.97049 -9.18569 -9.10238 -8.23177 -6.34280 0.34127 0.39521 1.41115 1.42872 1.53825 2.36858 2.38501 2.60511 2.88653 3.08713 3.17570 3.81734 3.89989 3.93774 3.98828 4.13013 4.18747 4.29745 4.35594 4.39879 4.45169 4.46472 4.55439 4.63555 4.70644 4.74653 4.82533 4.93100 4.95420 5.08525 5.14292 5.17876 5.25564 5.37188 5.60140 5.62194 5.75805 5.97320 6.16416 6.21945 6.42771 6.49161 6.80756 7.35718 8.88329 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003446 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.887077 B = 8124.293714 C = 8476.188557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.212 4.212 5 C -0.064 4.064 6 C -0.130 4.130 7 C 0.150 3.850 8 H 0.079 0.921 9 C 0.034 3.966 10 N -0.540 5.540 11 C 0.208 3.792 12 C -0.525 4.525 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.261 1.261 20 C 0.026 3.974 21 C 0.072 3.928 22 O -0.389 6.389 23 C -0.068 4.068 24 C -0.159 4.159 25 H 0.121 0.879 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.147 0.853 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.004 0.996 33 H -0.041 1.041 34 H 0.265 0.735 35 H 0.082 0.918 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.149 0.851 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -14.676 12.918 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.082 4.082 6 C -0.130 4.130 7 C 0.092 3.908 8 H 0.096 0.904 9 C -0.095 4.095 10 N -0.265 5.265 11 C 0.082 3.918 12 C -0.563 4.563 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.102 4.102 21 C -0.004 4.004 22 O -0.308 6.308 23 C -0.086 4.086 24 C -0.177 4.177 25 H 0.140 0.860 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.022 0.978 33 H -0.023 1.023 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.299 -14.927 13.024 21.112 hybrid contribution -0.521 1.238 -1.229 1.821 sum -7.821 -13.689 11.795 19.690 Atomic orbital electron populations 1.23343 0.76569 1.05619 1.02150 1.86042 1.23379 1.26538 1.88599 1.19233 0.92789 0.84511 0.96088 1.21401 1.01098 0.91618 1.08891 1.20863 0.94088 0.97582 0.95670 1.19539 0.94276 0.93322 1.05898 1.20743 0.95227 0.86673 0.88132 0.90355 1.22723 0.97080 0.91742 0.97953 1.62301 1.50609 1.02040 1.11519 1.19389 0.93476 0.94379 0.84525 1.21435 1.31577 1.08448 0.94820 0.91463 1.25966 0.97264 1.01661 0.94854 1.70095 1.46283 1.41476 0.99734 0.85327 0.78553 0.78205 0.78204 1.19790 1.20854 1.18524 1.22695 0.95339 0.98004 0.94153 1.22789 1.00041 0.82874 0.94716 1.87909 1.55682 1.21671 1.65530 1.20997 1.00882 0.90279 0.96407 1.20603 0.91631 0.98885 1.06577 0.86047 0.91753 0.92092 0.83497 0.86018 0.90661 0.96330 0.97766 1.02304 0.92616 0.89973 0.96493 0.91683 0.85925 0.83320 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.86 10.50 -92.48 -0.97 -7.83 16 3 C 0.12 2.77 6.69 22.50 0.15 2.92 16 4 C -0.21 -4.89 9.04 22.36 0.20 -4.68 16 5 C -0.06 -1.73 9.35 22.25 0.21 -1.52 16 6 C -0.13 -3.65 4.98 -19.85 -0.10 -3.75 16 7 C 0.15 4.77 3.01 29.88 0.09 4.86 16 8 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 9 C 0.03 1.30 4.91 86.31 0.42 1.72 16 10 N -0.54 -24.12 4.72 -899.79 -4.24 -28.36 16 11 C 0.21 11.43 4.72 85.56 0.40 11.83 16 12 C -0.52 -29.85 8.49 25.60 0.22 -29.63 16 13 H 0.07 3.70 7.14 -2.91 -0.02 3.68 16 14 C 0.00 0.03 5.46 84.66 0.46 0.50 16 15 N -0.94 -56.80 13.29 21.45 0.28 -56.52 16 16 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 C 0.03 1.04 5.46 86.31 0.47 1.51 16 21 C 0.07 2.20 7.01 72.01 0.50 2.70 16 22 O -0.39 -12.54 9.78 -148.98 -1.46 -14.00 16 23 C -0.07 -1.63 9.66 22.25 0.22 -1.41 16 24 C -0.16 -3.59 9.99 22.36 0.22 -3.37 16 25 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.69 7.67 -2.39 -0.02 0.67 16 27 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 28 H 0.15 2.63 6.30 -2.91 -0.02 2.61 16 29 H 0.12 3.39 7.77 -2.91 -0.02 3.36 16 30 H 0.07 2.90 8.09 -2.39 -0.02 2.88 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.00 0.25 8.04 -2.39 -0.02 0.23 16 33 H -0.04 -2.45 8.12 -2.38 -0.02 -2.46 16 34 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 35 H 0.08 3.37 6.83 -2.39 -0.02 3.36 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.15 2.96 8.04 -2.91 -0.02 2.94 16 40 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -68.00 328.42 1.24 -66.76 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.01 Total: 10.85 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.58 Total: -17.01 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -3.96 Total: -84.88 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -2.43 Total: -21.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.00 1.24 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879632034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.691 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds