Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05480 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11159 * 359.97438 * 6 5 4 8 8 C 1.38165 * 120.05118 * 359.74026 * 7 6 5 9 9 C 1.50699 * 120.02165 * 180.25451 * 8 7 6 10 10 H 1.09003 * 109.50457 * 215.18801 * 9 8 7 11 11 C 1.53098 * 109.50851 * 95.06433 * 9 8 7 12 12 N 1.47012 * 109.26058 * 183.21111 * 11 9 8 13 13 C 1.46899 * 111.00132 * 182.38987 * 12 11 9 14 14 C 1.50706 * 109.47288 * 170.32164 * 13 12 11 15 15 H 1.07996 * 119.99562 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00039 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00114 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00157 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47118 * 90.00051 * 18 16 14 20 20 H 1.48502 * 109.46910 * 210.00264 * 18 16 14 21 21 H 1.48505 * 109.46912 * 329.99993 * 18 16 14 22 22 C 1.47016 * 110.75105 * 58.61709 * 12 11 9 23 23 C 1.53103 * 109.25834 * 301.38452 * 22 12 11 24 24 O 1.43015 * 109.25846 * 56.84686 * 23 22 12 25 25 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 27 27 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 28 28 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 29 29 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.94159 * 180.02562 * 6 5 4 31 31 H 1.07997 * 119.97068 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.50633 * 303.15054 * 11 9 8 33 33 H 1.08999 * 109.50980 * 63.27720 * 11 9 8 34 34 H 1.09001 * 109.47218 * 290.32286 * 13 12 11 35 35 H 1.09000 * 109.47186 * 50.32337 * 13 12 11 36 36 H 0.96998 * 120.00510 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.50807 * 181.44662 * 22 12 11 38 38 H 1.09002 * 109.54189 * 61.33730 * 22 12 11 39 39 H 1.09000 * 109.49995 * 296.91550 * 23 22 12 40 40 H 1.08991 * 109.50858 * 176.78577 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4310 1.2849 0.0054 9 6 4.2537 0.0222 0.0106 10 1 3.7486 -0.7436 -0.5781 11 6 4.4264 -0.4695 1.4502 12 7 5.2931 -1.6570 1.4563 13 6 5.4390 -2.1952 2.8153 14 6 6.1292 -3.5336 2.7541 15 1 6.4297 -3.9430 1.8011 16 6 6.3769 -4.2351 3.9149 17 7 6.9787 -5.4032 3.8615 18 14 5.8577 -3.5265 5.5634 19 1 4.4777 -3.9734 5.8818 20 1 6.7874 -3.9994 6.6204 21 1 5.8951 -2.0433 5.4986 22 6 6.6047 -1.3476 0.8686 23 6 6.4101 -0.8470 -0.5652 24 8 5.5402 0.2881 -0.5546 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.2127 2.3204 0.0002 29 1 1.3339 4.5114 0.0011 30 1 3.7921 4.6381 0.0014 31 1 5.1343 2.5752 0.0000 32 1 4.8824 0.3172 2.0513 33 1 3.4524 -0.7277 1.8660 34 1 6.0331 -1.5072 3.4168 35 1 4.4540 -2.3147 3.2665 36 1 7.1534 -5.8967 4.6781 37 1 7.2208 -2.2467 0.8598 38 1 7.0962 -0.5752 1.4601 39 1 5.9682 -1.6387 -1.1702 40 1 7.3747 -0.5624 -0.9854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879633172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -66.494334 kcal Electronic energy + Delta-G solvation = -21840.994929 eV Core-core repulsion = 18620.493176 eV Total energy + Delta-G solvation = -3220.501752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47458 -40.23869 -38.26870 -36.93648 -34.58671 -33.84153 -31.09690 -30.76343 -30.33051 -28.11165 -27.05651 -25.15080 -23.83551 -22.96525 -22.19414 -21.22950 -19.05380 -19.00436 -17.56977 -17.49051 -16.95455 -16.63119 -16.34154 -16.10052 -15.98816 -15.60858 -15.37126 -15.19892 -14.97179 -14.42475 -14.34657 -13.89234 -13.58649 -13.35685 -12.92039 -12.79638 -12.71402 -12.57106 -12.44211 -12.29732 -11.98309 -11.96167 -11.72607 -11.50414 -11.41876 -10.81675 -10.70452 -9.79882 -9.20081 -9.10530 -8.31696 -6.35586 0.33600 0.49076 1.31840 1.32772 1.43661 2.31081 2.40325 2.62716 2.80767 2.99551 3.07487 3.79380 3.92785 4.02604 4.03785 4.12287 4.15423 4.26452 4.32260 4.37884 4.41935 4.49110 4.57000 4.61508 4.71124 4.74205 4.75843 4.84785 4.88251 4.98718 4.99175 5.09491 5.37443 5.45872 5.48076 5.59604 5.87182 5.89091 6.12198 6.23665 6.46876 6.52669 6.69193 7.27957 8.84566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.004731 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.578345 B = 5916.483807 C = 6408.660799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.123 3.877 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.162 4.162 7 C -0.068 4.068 8 C -0.137 4.137 9 C 0.156 3.844 10 H 0.062 0.938 11 C 0.040 3.960 12 N -0.541 5.541 13 C 0.173 3.827 14 C -0.518 4.518 15 H 0.042 0.958 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.944 3.056 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.257 1.257 22 C 0.028 3.972 23 C 0.072 3.928 24 O -0.386 6.386 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.028 0.972 33 H 0.075 0.925 34 H -0.014 1.014 35 H 0.026 0.974 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 19.710 -8.418 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.180 4.180 7 C -0.087 4.087 8 C -0.139 4.139 9 C 0.098 3.902 10 H 0.080 0.920 11 C -0.089 4.089 12 N -0.266 5.266 13 C 0.046 3.954 14 C -0.556 4.556 15 H 0.060 0.940 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.767 3.233 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.181 1.181 22 C -0.100 4.100 23 C -0.004 4.004 24 O -0.305 6.305 25 H 0.128 0.872 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.004 0.996 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.664 19.175 -8.673 24.561 hybrid contribution 0.283 -0.161 1.481 1.516 sum -12.380 19.014 -7.192 23.801 Atomic orbital electron populations 1.23336 0.76384 1.05300 1.02501 1.86120 1.23598 1.27071 1.88479 1.18954 0.91126 0.85463 0.96729 1.21487 1.01132 0.91595 1.08694 1.21371 0.94660 0.97810 0.95559 1.21385 0.94431 0.98557 1.03600 1.20979 1.00712 0.90950 0.96018 1.19004 0.90683 0.94821 1.09354 1.20454 0.83597 0.94017 0.92173 0.92011 1.22643 0.97904 0.91175 0.97133 1.62089 1.13354 1.28565 1.22586 1.19942 0.95554 0.93877 0.86003 1.21174 1.37631 1.02775 0.93996 0.93974 1.25770 0.94702 0.94924 1.03058 1.70027 1.43796 1.14839 1.29726 0.85763 0.78948 0.79600 0.78940 1.18862 1.20261 1.18125 1.22670 0.91076 0.99957 0.96345 1.22763 0.95084 0.88162 0.94401 1.87855 1.24717 1.35929 1.81987 0.87241 0.91435 0.91031 0.82827 0.82460 0.83387 0.85251 0.95385 0.90641 0.99614 0.95570 0.92260 0.90671 0.95268 0.92630 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.08 9.63 -92.48 -0.89 -9.97 16 3 C 0.12 3.23 6.66 22.50 0.15 3.38 16 4 C -0.21 -4.08 9.04 22.37 0.20 -3.88 16 5 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 6 C -0.16 -3.13 10.04 22.28 0.22 -2.91 16 7 C -0.07 -1.76 9.35 22.25 0.21 -1.55 16 8 C -0.14 -4.07 5.08 -19.77 -0.10 -4.17 16 9 C 0.16 5.36 2.75 29.88 0.08 5.44 16 10 H 0.06 2.29 7.69 -2.39 -0.02 2.28 16 11 C 0.04 1.55 4.91 86.31 0.42 1.97 16 12 N -0.54 -24.42 4.72 -899.75 -4.25 -28.66 16 13 C 0.17 8.82 3.79 85.56 0.32 9.14 16 14 C -0.52 -30.68 9.04 25.60 0.23 -30.45 16 15 H 0.04 2.75 7.36 -2.91 -0.02 2.73 16 16 C 0.01 0.79 5.47 84.65 0.46 1.25 16 17 N -0.94 -59.32 13.96 21.44 0.30 -59.02 16 18 Si 0.94 44.90 27.47 68.60 1.88 46.79 16 19 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 22 C 0.03 1.13 5.46 86.32 0.47 1.60 16 23 C 0.07 2.37 7.01 72.02 0.50 2.88 16 24 O -0.39 -13.01 9.30 -148.98 -1.39 -14.40 16 25 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 27 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 28 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 29 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.13 3.36 7.34 -2.91 -0.02 3.34 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 34 H -0.01 -0.70 7.18 -2.39 -0.02 -0.72 16 35 H 0.03 1.32 7.47 -2.39 -0.02 1.30 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.07 3.38 6.80 -2.39 -0.02 3.36 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -71.49 322.98 1.14 -70.35 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.96 Total: 11.86 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.52 Total: -16.94 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.95 Total: -87.68 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -2.28 Total: -24.37 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -71.49 1.14 -70.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879633172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.854 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds