Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00353 * 2 1 4 4 C 1.38754 * 120.05595 * 0.24442 * 3 2 1 5 5 C 1.38129 * 119.94224 * 180.28068 * 4 3 2 6 6 C 1.38283 * 120.05508 * 359.72726 * 5 4 3 7 7 C 1.38245 * 120.11244 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05814 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.03234 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.54476 * 145.10641 * 9 8 7 11 11 C 1.53091 * 109.50667 * 265.22264 * 9 8 7 12 12 N 1.47024 * 109.25688 * 176.77938 * 11 9 8 13 13 C 1.46895 * 110.99742 * 177.60456 * 12 11 9 14 14 C 1.50702 * 109.46770 * 189.68087 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47009 * 110.75282 * 301.38123 * 12 11 9 23 23 C 1.53109 * 109.25735 * 58.61474 * 22 12 11 24 24 O 1.43015 * 109.50011 * 25.00321 * 9 8 7 25 25 H 1.08998 * 109.47242 * 300.00477 * 1 2 3 26 26 H 1.09001 * 109.46810 * 60.00385 * 1 2 3 27 27 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.03090 * 0.02842 * 4 3 2 29 29 H 1.08004 * 119.97078 * 179.75248 * 5 4 3 30 30 H 1.07999 * 119.94284 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.96935 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.51076 * 56.84858 * 11 9 8 33 33 H 1.09004 * 109.50699 * 296.71506 * 11 9 8 34 34 H 1.09004 * 109.47258 * 69.68411 * 13 12 11 35 35 H 1.08994 * 109.47601 * 309.68003 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.50823 * 178.54622 * 22 12 11 38 38 H 1.08993 * 109.50823 * 298.64248 * 22 12 11 39 39 H 1.09007 * 109.50063 * 63.08491 * 23 22 12 40 40 H 1.08997 * 109.50540 * 183.21614 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0051 5 6 1.9211 3.6047 -0.0008 6 6 3.3021 3.6756 -0.0060 7 6 4.0561 2.5168 -0.0060 8 6 3.4312 1.2846 -0.0001 9 6 4.2537 0.0219 -0.0006 10 1 3.7494 -0.7420 0.5911 11 6 4.4255 -0.4757 -1.4382 12 7 5.2923 -1.6632 -1.4400 13 6 5.4373 -2.2070 -2.7968 14 6 6.1275 -3.5451 -2.7305 15 1 6.4279 -3.9511 -1.7759 16 6 6.3698 -4.2539 -3.8881 17 7 6.0036 -3.7597 -5.0506 18 14 7.2183 -5.9159 -3.8052 19 1 7.5257 -6.2448 -2.3901 20 1 6.3239 -6.9572 -4.3719 21 1 8.4795 -5.8675 -4.5878 22 6 6.6042 -1.3515 -0.8543 23 6 6.4105 -0.8450 0.5775 24 8 5.5405 0.2901 0.5627 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2130 2.3204 0.0096 29 1 1.3342 4.5114 -0.0008 30 1 3.7925 4.6378 -0.0102 31 1 5.1346 2.5749 -0.0097 32 1 4.8814 0.3085 -2.0428 33 1 3.4513 -0.7355 -1.8524 34 1 6.0311 -1.5215 -3.4015 35 1 4.4521 -2.3283 -3.2469 36 1 6.1744 -4.2582 -5.8650 37 1 7.2203 -2.2506 -0.8421 38 1 7.0950 -0.5819 -1.4499 39 1 5.9688 -1.6343 1.1861 40 1 7.3753 -0.5587 0.9960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879633173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -48.759655 kcal Electronic energy + Delta-G solvation = -21782.521920 eV Core-core repulsion = 18562.789202 eV Total energy + Delta-G solvation = -3219.732719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38017 -38.81065 -37.27235 -35.12266 -32.67137 -32.39430 -30.13559 -29.27334 -28.04131 -27.27414 -25.26753 -23.61788 -22.45950 -21.94220 -20.90608 -19.61757 -18.06307 -16.51003 -16.27514 -16.20244 -15.74682 -15.48345 -14.89715 -14.49415 -14.41525 -14.26811 -14.15118 -13.74768 -13.47859 -12.91075 -12.64442 -12.52278 -12.05036 -11.94625 -11.60876 -11.26399 -11.16581 -11.11019 -10.80640 -10.79435 -10.72862 -10.49727 -10.16566 -9.84993 -9.36589 -9.14000 -8.70664 -8.43881 -8.10283 -7.27369 -6.02682 -4.04230 1.32541 1.45051 3.27935 3.31030 3.38322 3.43149 3.73948 4.02661 4.41889 4.72489 4.86483 4.93761 5.04519 5.08626 5.12163 5.32499 5.36216 5.42400 5.43815 5.51874 5.58441 5.73033 5.79053 5.84186 5.93724 6.03727 6.11539 6.29421 6.34348 6.45232 6.56232 6.60667 6.64546 6.81318 7.25464 7.33453 7.39112 7.57545 7.78656 8.06728 8.16926 8.52632 9.03252 9.59940 11.08345 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023772 B = 0.004340 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.553472 B = 6449.772326 C = 6963.471972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.137 3.863 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.145 3.855 10 H 0.076 0.924 11 C 0.036 3.964 12 N -0.534 5.534 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.027 3.973 23 C 0.065 3.935 24 O -0.388 6.388 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.029 0.971 33 H 0.078 0.922 34 H -0.008 1.008 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.093 0.907 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 12.774 11.284 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.091 3.909 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.180 4.180 7 C -0.075 4.075 8 C -0.106 4.106 9 C 0.087 3.913 10 H 0.094 0.906 11 C -0.093 4.093 12 N -0.259 5.259 13 C 0.069 3.931 14 C -0.545 4.545 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.102 4.102 23 C -0.012 4.012 24 O -0.307 6.307 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.009 0.991 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.673 12.336 11.443 18.930 hybrid contribution 0.441 -0.381 -0.847 1.028 sum -8.232 11.955 10.596 17.971 Atomic orbital electron populations 1.23057 0.78561 1.04084 1.01012 1.86163 1.21178 1.26485 1.88326 1.18761 0.91320 0.84514 0.96298 1.21133 0.99791 0.92240 1.09927 1.20900 0.94703 0.96775 0.97916 1.21057 0.93856 0.98368 1.04744 1.20905 1.00656 0.90550 0.95353 1.19052 0.90019 0.95460 1.06118 1.20645 0.83357 0.92737 0.94532 0.90572 1.22590 0.99099 0.92750 0.94819 1.62353 1.11321 1.26186 1.26057 1.19736 0.97010 0.94449 0.81950 1.21187 1.37428 1.02852 0.93072 0.91781 1.24997 0.96060 0.98252 0.95317 1.69977 1.47606 1.38487 0.97729 0.86437 0.79077 0.83753 0.78124 1.19629 1.21007 1.21112 1.22630 0.92782 1.00621 0.94120 1.22728 0.93371 0.88099 0.96957 1.87829 1.24713 1.35826 1.82382 0.92894 0.92691 0.88109 0.85509 0.86060 0.85994 0.84680 0.95255 0.90319 0.99060 0.95087 0.92973 0.88923 0.95262 0.92671 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.40 9.64 -19.40 -0.19 -4.59 16 3 C 0.14 1.96 6.66 -39.21 -0.26 1.70 16 4 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 5 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 6 C -0.16 -1.90 10.04 -39.56 -0.40 -2.30 16 7 C -0.06 -0.80 9.35 -39.61 -0.37 -1.17 16 8 C -0.11 -1.65 5.08 -104.47 -0.53 -2.18 16 9 C 0.15 2.56 2.74 -27.84 -0.08 2.49 16 10 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 11 C 0.04 0.73 4.91 -3.71 -0.02 0.71 16 12 N -0.53 -12.14 4.72 -235.75 -1.11 -13.26 16 13 C 0.19 5.21 4.72 -4.98 -0.02 5.18 16 14 C -0.51 -14.39 8.48 -34.44 -0.29 -14.69 16 15 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.03 0.55 5.46 -3.71 -0.02 0.53 16 23 C 0.07 1.09 7.01 37.21 0.26 1.35 16 24 O -0.39 -6.78 9.31 -35.23 -0.33 -7.11 16 25 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 26 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.88 7.35 -52.48 -0.39 1.50 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.03 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.09 1.94 6.80 -51.93 -0.35 1.58 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -31.89 326.60 -8.57 -40.46 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.99 Total: -1.06 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.59 Total: -9.81 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.38 Total: -39.51 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.51 Total: -11.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.89 -8.57 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879633173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.296 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds