Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00353 * 2 1 4 4 C 1.38754 * 120.05595 * 0.24442 * 3 2 1 5 5 C 1.38129 * 119.94224 * 180.28068 * 4 3 2 6 6 C 1.38283 * 120.05508 * 359.72726 * 5 4 3 7 7 C 1.38245 * 120.11244 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05814 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.03234 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.54476 * 145.10641 * 9 8 7 11 11 C 1.53091 * 109.50667 * 265.22264 * 9 8 7 12 12 N 1.47024 * 109.25688 * 176.77938 * 11 9 8 13 13 C 1.46895 * 110.99742 * 177.60456 * 12 11 9 14 14 C 1.50702 * 109.46770 * 189.68087 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47009 * 110.75282 * 301.38123 * 12 11 9 23 23 C 1.53109 * 109.25735 * 58.61474 * 22 12 11 24 24 O 1.43015 * 109.50011 * 25.00321 * 9 8 7 25 25 H 1.08998 * 109.47242 * 300.00477 * 1 2 3 26 26 H 1.09001 * 109.46810 * 60.00385 * 1 2 3 27 27 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.03090 * 0.02842 * 4 3 2 29 29 H 1.08004 * 119.97078 * 179.75248 * 5 4 3 30 30 H 1.07999 * 119.94284 * 180.02562 * 6 5 4 31 31 H 1.08005 * 119.96935 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.51076 * 56.84858 * 11 9 8 33 33 H 1.09004 * 109.50699 * 296.71506 * 11 9 8 34 34 H 1.09004 * 109.47258 * 69.68411 * 13 12 11 35 35 H 1.08994 * 109.47601 * 309.68003 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.50823 * 178.54622 * 22 12 11 38 38 H 1.08993 * 109.50823 * 298.64248 * 22 12 11 39 39 H 1.09007 * 109.50063 * 63.08491 * 23 22 12 40 40 H 1.08997 * 109.50540 * 183.21614 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0051 5 6 1.9211 3.6047 -0.0008 6 6 3.3021 3.6756 -0.0060 7 6 4.0561 2.5168 -0.0060 8 6 3.4312 1.2846 -0.0001 9 6 4.2537 0.0219 -0.0006 10 1 3.7494 -0.7420 0.5911 11 6 4.4255 -0.4757 -1.4382 12 7 5.2923 -1.6632 -1.4400 13 6 5.4373 -2.2070 -2.7968 14 6 6.1275 -3.5451 -2.7305 15 1 6.4279 -3.9511 -1.7759 16 6 6.3698 -4.2539 -3.8881 17 7 6.0036 -3.7597 -5.0506 18 14 7.2183 -5.9159 -3.8052 19 1 7.5257 -6.2448 -2.3901 20 1 6.3239 -6.9572 -4.3719 21 1 8.4795 -5.8675 -4.5878 22 6 6.6042 -1.3515 -0.8543 23 6 6.4105 -0.8450 0.5775 24 8 5.5405 0.2901 0.5627 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2130 2.3204 0.0096 29 1 1.3342 4.5114 -0.0008 30 1 3.7925 4.6378 -0.0102 31 1 5.1346 2.5749 -0.0097 32 1 4.8814 0.3085 -2.0428 33 1 3.4513 -0.7355 -1.8524 34 1 6.0311 -1.5215 -3.4015 35 1 4.4521 -2.3283 -3.2469 36 1 6.1744 -4.2582 -5.8650 37 1 7.2203 -2.2506 -0.8421 38 1 7.0950 -0.5819 -1.4499 39 1 5.9688 -1.6343 1.1861 40 1 7.3753 -0.5587 0.9960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879633173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -70.200022 kcal Electronic energy + Delta-G solvation = -21783.451645 eV Core-core repulsion = 18562.789202 eV Total energy + Delta-G solvation = -3220.662443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46949 -40.21615 -38.26680 -36.88596 -34.58723 -33.83677 -31.09438 -30.61413 -29.94712 -28.11313 -27.02443 -25.11285 -24.14086 -22.98909 -22.28721 -21.21919 -19.04012 -18.56909 -17.55460 -17.50054 -16.93817 -16.64377 -16.43590 -16.06093 -15.94919 -15.59025 -15.45994 -15.19856 -14.68949 -14.42545 -14.13929 -13.82655 -13.55213 -13.21812 -12.91236 -12.75748 -12.69828 -12.62884 -12.51185 -12.28344 -12.07962 -11.98266 -11.73198 -11.45328 -11.34037 -10.70502 -10.62940 -9.79916 -9.19554 -9.10510 -8.23887 -6.35202 0.33383 0.48735 1.40388 1.41267 1.55303 2.38174 2.40134 2.63955 2.81339 3.07518 3.15547 3.80310 3.93700 4.02678 4.03738 4.13498 4.17616 4.28363 4.32591 4.40556 4.41572 4.49128 4.57443 4.62048 4.72210 4.75044 4.84938 4.91192 4.92497 5.05188 5.12366 5.16889 5.37395 5.47465 5.58760 5.59751 5.88533 5.95752 6.15039 6.20342 6.46010 6.48093 6.79738 7.34795 8.88144 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023772 B = 0.004340 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.553472 B = 6449.772326 C = 6963.471972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.122 3.878 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.162 4.162 7 C -0.070 4.070 8 C -0.138 4.138 9 C 0.159 3.841 10 H 0.064 0.936 11 C 0.043 3.957 12 N -0.541 5.541 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.975 3.025 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.027 3.973 23 C 0.072 3.928 24 O -0.387 6.387 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.017 0.983 33 H 0.066 0.934 34 H -0.040 1.040 35 H 0.001 0.999 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.019 0.981 39 H 0.060 0.940 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 13.616 12.787 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.076 3.924 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.180 4.180 7 C -0.088 4.088 8 C -0.140 4.140 9 C 0.101 3.899 10 H 0.082 0.918 11 C -0.086 4.086 12 N -0.266 5.266 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.799 3.201 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.102 4.102 23 C -0.005 4.005 24 O -0.306 6.306 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.036 0.964 33 H 0.084 0.916 34 H -0.022 1.022 35 H 0.019 0.981 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.179 13.195 12.970 20.654 hybrid contribution 0.511 -0.560 -1.331 1.532 sum -8.668 12.634 11.639 19.241 Atomic orbital electron populations 1.23340 0.76367 1.05318 1.02494 1.86117 1.23631 1.27082 1.88476 1.18969 0.91146 0.85512 0.96750 1.21494 1.01147 0.91578 1.08685 1.21378 0.94635 0.97820 0.95555 1.21386 0.94461 0.98529 1.03600 1.20982 1.00698 0.91011 0.96085 1.19034 0.90752 0.94907 1.09280 1.20418 0.83637 0.93946 0.91875 0.91770 1.22576 0.97655 0.91296 0.97054 1.62292 1.13151 1.27810 1.23350 1.19387 0.94537 0.94051 0.83716 1.21453 1.37873 1.03436 0.93463 0.91494 1.25982 0.96513 1.02518 0.94687 1.70112 1.48565 1.40357 0.98608 0.85248 0.77905 0.78230 0.78711 1.18427 1.20351 1.20261 1.22704 0.91170 1.00078 0.96206 1.22815 0.95108 0.88218 0.94326 1.87849 1.24683 1.36084 1.82005 0.90846 0.91608 0.87207 0.82755 0.82343 0.83317 0.85324 0.96446 0.91557 1.02224 0.98087 0.92580 0.89750 0.96245 0.92121 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.72 9.64 -92.34 -0.89 -10.61 16 3 C 0.12 3.44 6.66 22.51 0.15 3.59 16 4 C -0.21 -4.43 9.04 22.37 0.20 -4.23 16 5 C -0.08 -1.40 10.04 22.25 0.22 -1.17 16 6 C -0.16 -3.40 10.04 22.28 0.22 -3.18 16 7 C -0.07 -1.93 9.35 22.25 0.21 -1.72 16 8 C -0.14 -4.39 5.08 -19.77 -0.10 -4.49 16 9 C 0.16 5.79 2.74 29.88 0.08 5.87 16 10 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16 11 C 0.04 1.83 4.91 86.31 0.42 2.26 16 12 N -0.54 -25.77 4.72 -899.77 -4.25 -30.02 16 13 C 0.21 11.92 4.72 85.56 0.40 12.32 16 14 C -0.52 -30.60 8.48 25.60 0.22 -30.38 16 15 H 0.07 3.79 7.12 -2.91 -0.02 3.77 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 18 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.03 1.10 5.46 86.32 0.47 1.58 16 23 C 0.07 2.34 7.01 72.02 0.50 2.85 16 24 O -0.39 -13.49 9.31 -148.98 -1.39 -14.88 16 25 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 26 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.13 3.59 7.35 -2.91 -0.02 3.57 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 2.93 8.09 -2.39 -0.02 2.91 16 34 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 35 H 0.00 0.06 8.04 -2.39 -0.02 0.04 16 36 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.08 3.59 6.80 -2.39 -0.02 3.58 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -71.42 326.60 1.39 -70.04 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.02 Total: 10.81 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 4.58 Total: -14.74 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.96 Total: -87.41 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -2.28 Total: -25.49 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.42 1.39 -70.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879633173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.164 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds