Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00367 * 2 1 4 4 C 1.38645 * 119.95195 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.87674 * 179.97438 * 4 3 2 6 6 C 1.38170 * 119.99867 * 359.97438 * 5 4 3 7 7 C 1.38509 * 120.33114 * 0.02562 * 6 5 4 8 8 C 1.38165 * 119.87669 * 359.97438 * 7 6 5 9 9 C 1.51364 * 109.77374 * 179.97438 * 8 7 6 10 10 C 1.54354 * 105.16446 * 17.18423 * 9 8 7 11 11 C 1.51374 * 130.36337 * 179.97438 * 7 6 5 12 12 C 1.53004 * 110.30104 * 43.81423 * 11 7 6 13 13 O 1.42895 * 109.46935 * 292.82528 * 12 11 7 14 14 N 1.46893 * 110.30568 * 281.75590 * 11 7 6 15 15 C 1.46908 * 110.99969 * 175.87068 * 14 11 7 16 16 C 1.50699 * 109.46902 * 174.58540 * 15 14 11 17 17 H 1.07995 * 120.00084 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99921 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99722 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99981 * 179.71951 * 18 16 15 21 21 H 1.48504 * 109.47243 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46918 * 119.99645 * 20 18 16 23 23 H 1.48492 * 109.47221 * 239.99731 * 20 18 16 24 24 H 1.08993 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46860 * 299.99777 * 1 2 3 26 26 H 1.08998 * 109.47246 * 59.99392 * 1 2 3 27 27 H 1.08003 * 120.06135 * 359.95427 * 4 3 2 28 28 H 1.08009 * 120.00389 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.83779 * 179.97438 * 6 5 4 30 30 H 1.09000 * 110.30282 * 136.10436 * 9 8 7 31 31 H 1.08992 * 110.30748 * 258.16055 * 9 8 7 32 32 H 1.09005 * 110.82206 * 215.43624 * 10 9 8 33 33 H 1.08996 * 110.82522 * 91.88665 * 10 9 8 34 34 H 1.09002 * 109.47621 * 52.83074 * 12 11 7 35 35 H 1.09004 * 109.47062 * 172.82658 * 12 11 7 36 36 H 0.96703 * 114.00030 * 179.97438 * 13 12 11 37 37 H 1.00894 * 111.00435 * 299.82580 * 14 11 7 38 38 H 1.08993 * 109.46820 * 54.58426 * 15 14 11 39 39 H 1.08994 * 109.47088 * 294.58183 * 15 14 11 40 40 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6027 0.0011 6 6 3.2986 3.6731 0.0016 7 6 4.0581 2.5148 0.0011 8 6 3.4336 1.2823 0.0005 9 6 4.4727 0.1817 -0.0006 10 6 5.7850 0.8649 0.4394 11 6 5.5602 2.3274 0.0010 12 6 6.2152 3.2887 0.9948 13 8 6.0553 4.6319 0.5342 14 7 6.1007 2.5434 -1.3477 15 6 7.5675 2.4617 -1.3463 16 6 8.0772 2.5550 -2.7614 17 1 7.3811 2.6637 -3.5800 18 6 9.4321 2.5007 -3.0112 19 7 10.2796 2.3678 -2.0144 20 14 10.0634 2.6085 -4.7660 21 1 8.9152 2.7481 -5.6974 22 1 10.9548 3.7886 -4.8996 23 1 10.8219 1.3753 -5.0958 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2114 2.3168 0.0002 28 1 1.3318 4.5094 0.0019 29 1 3.7875 4.6360 0.0016 30 1 4.1970 -0.5995 0.7078 31 1 4.5794 -0.2367 -1.0014 32 1 6.6402 0.4316 -0.0792 33 1 5.9122 0.8000 1.5200 34 1 5.7420 3.1805 1.9708 35 1 7.2771 3.0572 1.0783 36 1 6.4470 5.2968 1.1170 37 1 5.7029 1.8901 -2.0057 38 1 7.8781 1.5123 -0.9101 39 1 7.9766 3.2830 -0.7579 40 1 11.2328 2.3299 -2.1901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880379417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -54.648290 kcal Electronic energy + Delta-G solvation = -22000.805097 eV Core-core repulsion = 18780.817028 eV Total energy + Delta-G solvation = -3219.988069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56563 -38.72883 -36.44009 -35.31096 -33.53387 -31.94691 -30.10228 -28.95105 -27.85312 -27.05759 -25.93889 -23.64504 -22.47378 -21.47036 -20.75341 -19.10451 -17.44808 -16.70584 -16.40074 -16.09694 -15.78709 -15.33539 -14.87909 -14.82332 -14.34273 -14.06207 -13.70715 -13.08571 -13.05911 -12.67049 -12.49085 -12.22879 -11.95027 -11.87378 -11.58733 -11.35038 -11.04081 -10.99053 -10.94470 -10.70021 -10.59688 -10.47624 -10.24943 -9.88366 -9.36141 -9.10726 -8.47144 -8.37509 -7.90443 -7.17297 -6.00761 -4.01009 1.52446 1.70676 3.33183 3.34751 3.40484 3.46288 3.95971 4.46543 4.59286 4.64762 4.87128 5.03253 5.05177 5.10956 5.22781 5.29792 5.35407 5.36115 5.48118 5.50377 5.66086 5.79640 5.83130 5.91125 6.06183 6.11066 6.18647 6.24133 6.39492 6.42964 6.54744 6.75750 6.98137 7.04133 7.30618 7.50759 7.52915 7.82545 8.13272 8.20139 8.46188 8.67468 9.08576 9.63302 11.10521 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.004664 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.578275 B = 6001.628766 C = 6379.068791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.026 4.026 8 C -0.129 4.129 9 C -0.067 4.067 10 C -0.154 4.154 11 C 0.156 3.844 12 C 0.096 3.904 13 O -0.546 6.546 14 N -0.658 5.658 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.365 0.635 37 H 0.329 0.671 38 H -0.012 1.012 39 H 0.035 0.965 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.744 -1.767 8.355 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.027 4.027 8 C -0.130 4.130 9 C -0.104 4.104 10 C -0.194 4.194 11 C 0.064 3.936 12 C 0.018 3.982 13 O -0.349 6.349 14 N -0.288 5.288 15 C 0.068 3.932 16 C -0.549 4.549 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.212 1.212 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.210 0.790 37 H 0.147 0.853 38 H 0.006 0.994 39 H 0.053 0.947 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.768 -1.591 7.931 18.617 hybrid contribution 0.558 -0.498 -0.354 0.827 sum -16.210 -2.090 7.578 18.015 Atomic orbital electron populations 1.22977 0.79140 1.03434 1.01064 1.86067 1.20719 1.27343 1.89127 1.18514 0.90631 0.84044 0.98572 1.21017 0.99323 0.92367 1.10374 1.20828 0.94498 0.96640 0.99268 1.20788 0.92564 0.98976 1.00789 1.20292 0.94934 0.91805 0.95633 1.19923 0.90374 0.96885 1.05803 1.20836 0.91830 0.95762 1.01954 1.23067 0.98121 0.96539 1.01634 1.20385 0.89140 0.91664 0.92447 1.22128 0.99089 0.82865 0.94166 1.86642 1.81079 1.15134 1.52058 1.60728 1.09800 1.55911 1.02329 1.19643 0.80671 0.95400 0.97516 1.21239 0.91717 1.49245 0.92746 0.92066 1.24945 0.96844 0.95414 0.97238 1.69961 1.02291 1.50885 1.30709 0.86459 0.78811 0.77461 0.84791 1.19687 1.21039 1.21164 0.88660 0.93011 0.92893 0.85903 0.86045 0.84760 0.91065 0.90426 0.89120 0.91173 0.94650 0.92837 0.78994 0.85318 0.99391 0.94718 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.35 10.44 -19.41 -0.20 -4.55 16 3 C 0.13 1.91 6.69 -39.17 -0.26 1.65 16 4 C -0.21 -2.81 9.03 -39.48 -0.36 -3.17 16 5 C -0.09 -1.29 10.04 -39.65 -0.40 -1.69 16 6 C -0.11 -1.82 9.53 -39.51 -0.38 -2.20 16 7 C -0.03 -0.45 5.20 -104.22 -0.54 -0.99 16 8 C -0.13 -2.12 6.11 -104.06 -0.64 -2.75 16 9 C -0.07 -1.04 6.71 -26.85 -0.18 -1.22 16 10 C -0.15 -2.58 6.02 -25.33 -0.15 -2.73 16 11 C 0.16 2.88 0.55 -131.73 -0.07 2.81 16 12 C 0.10 1.66 5.09 37.16 0.19 1.85 16 13 O -0.55 -9.52 11.60 -35.23 -0.41 -9.93 16 14 N -0.66 -14.61 5.96 -101.35 -0.60 -15.21 16 15 C 0.19 5.02 4.59 -4.97 -0.02 5.00 16 16 C -0.51 -14.59 9.26 -34.44 -0.32 -14.91 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.12 1.28 6.29 -52.48 -0.33 0.95 16 28 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 29 H 0.13 2.22 6.68 -52.49 -0.35 1.87 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.67 6.29 -51.93 -0.33 1.34 16 33 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 1.00 6.84 -51.93 -0.36 0.64 16 36 H 0.37 4.60 9.12 45.56 0.42 5.01 16 37 H 0.33 7.31 8.64 -39.30 -0.34 6.97 16 38 H -0.01 -0.31 6.31 -51.93 -0.33 -0.64 16 39 H 0.03 0.97 6.70 -51.93 -0.35 0.63 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -32.57 323.06 -7.69 -40.26 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.83 Total: 9.19 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.23 Total: -15.59 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.13 Total: -41.17 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.61 Total: -14.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.57 -7.69 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880379417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.387 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds