Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00367 * 2 1 4 4 C 1.38645 * 119.95195 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.87674 * 179.97438 * 4 3 2 6 6 C 1.38170 * 119.99867 * 359.97438 * 5 4 3 7 7 C 1.38509 * 120.33114 * 0.02562 * 6 5 4 8 8 C 1.38165 * 119.87669 * 359.97438 * 7 6 5 9 9 C 1.51364 * 109.77374 * 179.97438 * 8 7 6 10 10 C 1.54354 * 105.16446 * 17.18423 * 9 8 7 11 11 C 1.51374 * 130.36337 * 179.97438 * 7 6 5 12 12 C 1.53004 * 110.30104 * 43.81423 * 11 7 6 13 13 O 1.42895 * 109.46935 * 292.82528 * 12 11 7 14 14 N 1.46893 * 110.30568 * 281.75590 * 11 7 6 15 15 C 1.46908 * 110.99969 * 175.87068 * 14 11 7 16 16 C 1.50699 * 109.46902 * 174.58540 * 15 14 11 17 17 H 1.07995 * 120.00084 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99921 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99722 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99981 * 179.71951 * 18 16 15 21 21 H 1.48504 * 109.47243 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46918 * 119.99645 * 20 18 16 23 23 H 1.48492 * 109.47221 * 239.99731 * 20 18 16 24 24 H 1.08993 * 109.47455 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46860 * 299.99777 * 1 2 3 26 26 H 1.08998 * 109.47246 * 59.99392 * 1 2 3 27 27 H 1.08003 * 120.06135 * 359.95427 * 4 3 2 28 28 H 1.08009 * 120.00389 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.83779 * 179.97438 * 6 5 4 30 30 H 1.09000 * 110.30282 * 136.10436 * 9 8 7 31 31 H 1.08992 * 110.30748 * 258.16055 * 9 8 7 32 32 H 1.09005 * 110.82206 * 215.43624 * 10 9 8 33 33 H 1.08996 * 110.82522 * 91.88665 * 10 9 8 34 34 H 1.09002 * 109.47621 * 52.83074 * 12 11 7 35 35 H 1.09004 * 109.47062 * 172.82658 * 12 11 7 36 36 H 0.96703 * 114.00030 * 179.97438 * 13 12 11 37 37 H 1.00894 * 111.00435 * 299.82580 * 14 11 7 38 38 H 1.08993 * 109.46820 * 54.58426 * 15 14 11 39 39 H 1.08994 * 109.47088 * 294.58183 * 15 14 11 40 40 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6027 0.0011 6 6 3.2986 3.6731 0.0016 7 6 4.0581 2.5148 0.0011 8 6 3.4336 1.2823 0.0005 9 6 4.4727 0.1817 -0.0006 10 6 5.7850 0.8649 0.4394 11 6 5.5602 2.3274 0.0010 12 6 6.2152 3.2887 0.9948 13 8 6.0553 4.6319 0.5342 14 7 6.1007 2.5434 -1.3477 15 6 7.5675 2.4617 -1.3463 16 6 8.0772 2.5550 -2.7614 17 1 7.3811 2.6637 -3.5800 18 6 9.4321 2.5007 -3.0112 19 7 10.2796 2.3678 -2.0144 20 14 10.0634 2.6085 -4.7660 21 1 8.9152 2.7481 -5.6974 22 1 10.9548 3.7886 -4.8996 23 1 10.8219 1.3753 -5.0958 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 0.2114 2.3168 0.0002 28 1 1.3318 4.5094 0.0019 29 1 3.7875 4.6360 0.0016 30 1 4.1970 -0.5995 0.7078 31 1 4.5794 -0.2367 -1.0014 32 1 6.6402 0.4316 -0.0792 33 1 5.9122 0.8000 1.5200 34 1 5.7420 3.1805 1.9708 35 1 7.2771 3.0572 1.0783 36 1 6.4470 5.2968 1.1170 37 1 5.7029 1.8901 -2.0057 38 1 7.8781 1.5123 -0.9101 39 1 7.9766 3.2830 -0.7579 40 1 11.2328 2.3299 -2.1901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880379417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -78.764337 kcal Electronic energy + Delta-G solvation = -22001.850848 eV Core-core repulsion = 18780.817028 eV Total energy + Delta-G solvation = -3221.033820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76618 -39.89036 -37.68474 -36.69185 -35.37619 -33.75680 -31.41458 -30.13983 -29.25109 -27.97772 -27.80716 -25.11831 -24.03081 -22.90594 -21.95514 -20.45392 -19.00596 -18.20209 -17.93366 -17.20589 -16.88329 -16.69856 -16.48790 -16.15580 -15.97279 -15.18118 -15.03810 -14.68088 -14.44279 -14.18801 -13.81627 -13.72082 -13.38731 -13.13186 -12.88716 -12.84495 -12.69851 -12.54864 -12.21305 -12.19963 -12.03623 -11.80099 -11.74029 -11.51311 -11.23834 -10.75904 -10.62132 -9.60466 -9.01448 -8.97530 -8.20778 -6.29851 0.37275 0.55833 1.39972 1.40805 1.54467 2.40356 2.44471 2.79267 3.12732 3.30543 3.41434 3.66674 3.74192 3.99769 4.08620 4.19178 4.23895 4.40791 4.43905 4.44595 4.53014 4.60159 4.65931 4.67732 4.76663 4.83633 4.86509 5.00365 5.06629 5.15232 5.23155 5.38872 5.43415 5.60775 5.63721 5.81875 5.90307 6.06850 6.51207 6.52432 6.73127 6.91369 7.03991 7.39959 8.90729 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.004664 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.578275 B = 6001.628766 C = 6379.068791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.123 3.877 4 C -0.204 4.204 5 C -0.087 4.087 6 C -0.130 4.130 7 C -0.045 4.045 8 C -0.147 4.147 9 C -0.060 4.060 10 C -0.149 4.149 11 C 0.147 3.853 12 C 0.099 3.901 13 O -0.564 6.564 14 N -0.661 5.661 15 C 0.216 3.784 16 C -0.536 4.536 17 H 0.056 0.944 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.116 0.884 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.384 0.616 37 H 0.326 0.674 38 H -0.031 1.031 39 H 0.008 0.992 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.098 -1.767 8.207 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.078 3.922 4 C -0.222 4.222 5 C -0.105 4.105 6 C -0.149 4.149 7 C -0.045 4.045 8 C -0.148 4.148 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.056 3.944 12 C 0.021 3.979 13 O -0.369 6.369 14 N -0.291 5.291 15 C 0.089 3.911 16 C -0.574 4.574 17 H 0.074 0.926 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.202 1.202 24 H 0.134 0.866 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.175 0.825 28 H 0.171 0.829 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.232 0.768 37 H 0.143 0.857 38 H -0.013 1.013 39 H 0.026 0.974 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.143 -1.586 7.804 20.733 hybrid contribution 1.160 -0.499 -0.246 1.286 sum -17.983 -2.085 7.557 19.618 Atomic orbital electron populations 1.23330 0.76604 1.05406 1.02262 1.86049 1.23343 1.26768 1.88846 1.18652 0.90314 0.85265 0.97941 1.21400 1.00996 0.91384 1.08449 1.21169 0.93551 0.98247 0.97496 1.20864 0.93873 0.98122 1.02026 1.20160 0.93785 0.92869 0.97704 1.20006 0.91468 0.96384 1.06959 1.20757 0.91107 0.96049 1.01818 1.22960 0.97942 0.95526 1.02411 1.20543 0.90528 0.92850 0.90487 1.22088 0.97824 0.82813 0.95168 1.86588 1.81378 1.15620 1.53361 1.60598 1.07491 1.56093 1.04871 1.19199 0.82985 0.93185 0.95756 1.21579 0.92293 1.49789 0.93730 0.92615 1.25828 0.96962 0.94697 1.01706 1.70074 1.02728 1.51276 1.32958 0.85364 0.78212 0.77815 0.79378 1.19156 1.20330 1.20175 0.86551 0.91465 0.91867 0.82467 0.82909 0.85749 0.89515 0.91305 0.91600 0.89346 0.91855 0.95149 0.76799 0.85700 1.01312 0.97373 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.34 10.44 -92.36 -0.96 -9.30 16 3 C 0.12 3.44 6.69 22.54 0.15 3.59 16 4 C -0.20 -4.72 9.03 22.34 0.20 -4.52 16 5 C -0.09 -2.13 10.04 22.22 0.22 -1.91 16 6 C -0.13 -4.09 9.53 22.32 0.21 -3.88 16 7 C -0.04 -1.53 5.20 -19.60 -0.10 -1.64 16 8 C -0.15 -4.73 6.11 -19.50 -0.12 -4.85 16 9 C -0.06 -1.89 6.71 30.52 0.20 -1.69 16 10 C -0.15 -5.14 6.02 31.50 0.19 -4.96 16 11 C 0.15 5.60 0.55 3.45 0.00 5.60 16 12 C 0.10 3.54 5.09 71.98 0.37 3.91 16 13 O -0.56 -20.06 11.60 -148.98 -1.73 -21.79 16 14 N -0.66 -30.61 5.96 -474.57 -2.83 -33.43 16 15 C 0.22 11.76 4.59 85.56 0.39 12.15 16 16 C -0.54 -31.51 9.26 25.60 0.24 -31.28 16 17 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 18 C 0.01 0.37 5.46 84.66 0.46 0.83 16 19 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 20 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 0.76 7.66 -2.38 -0.02 0.75 16 26 H 0.06 0.78 7.66 -2.39 -0.02 0.77 16 27 H 0.16 2.50 6.29 -2.91 -0.02 2.48 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.12 4.08 6.68 -2.91 -0.02 4.06 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.58 6.29 -2.38 -0.02 2.57 16 33 H 0.09 2.66 7.92 -2.39 -0.02 2.64 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 1.20 6.84 -2.38 -0.02 1.18 16 36 H 0.38 9.82 9.12 -74.06 -0.68 9.14 16 37 H 0.33 15.14 8.64 -89.70 -0.77 14.36 16 38 H -0.03 -1.75 6.31 -2.39 -0.02 -1.76 16 39 H 0.01 0.49 6.70 -2.39 -0.02 0.47 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -71.27 323.06 -0.06 -71.33 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.38 Total: 29.17 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 3.53 Total: -27.26 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -2.54 Total: -89.57 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.69 Total: -31.09 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.27 -0.06 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880379417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.435 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds