Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47029 * 2 1 4 4 C 1.34229 * 116.99895 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99910 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99929 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47082 * 204.99775 * 6 4 3 8 8 N 1.46906 * 109.47119 * 324.99690 * 6 4 3 9 9 C 1.46901 * 110.99793 * 300.00230 * 8 6 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.50700 * 109.47049 * 84.99718 * 6 4 3 19 19 C 1.38242 * 119.99609 * 239.72475 * 18 6 4 20 20 C 1.38239 * 119.99543 * 179.80920 * 19 18 6 21 21 C 1.38238 * 119.99970 * 0.40618 * 20 19 18 22 22 C 1.38230 * 120.00022 * 359.84595 * 21 20 19 23 23 C 1.38234 * 120.00431 * 359.96425 * 22 21 20 24 24 H 1.08993 * 109.47295 * 300.00044 * 1 2 3 25 25 H 1.09000 * 109.46880 * 60.00353 * 1 2 3 26 26 H 1.08999 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47608 * 239.99905 * 2 1 3 28 28 H 1.09001 * 109.47324 * 119.99940 * 2 1 3 29 29 H 1.09005 * 109.47374 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47167 * 299.99879 * 7 6 4 31 31 H 1.09006 * 109.47425 * 60.00077 * 7 6 4 32 32 H 1.00899 * 110.99995 * 176.04628 * 8 6 4 33 33 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 34 34 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 35 35 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00404 * 0.02562 * 19 18 6 37 37 H 1.08001 * 120.00121 * 180.22820 * 20 19 18 38 38 H 1.08000 * 120.00120 * 179.83469 * 21 20 19 39 39 H 1.08002 * 120.00276 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00531 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.3234 2.9094 -0.6102 8 7 3.0591 3.8241 -0.7935 9 6 2.9592 3.3561 -2.1824 10 6 2.0691 4.2880 -2.9637 11 1 1.6226 5.1426 -2.4772 12 6 1.8256 4.0501 -4.2998 13 7 1.0491 4.8636 -4.9816 14 14 2.5985 2.5723 -5.1413 15 1 1.6896 1.4039 -5.0231 16 1 2.8230 2.8814 -6.5763 17 1 3.8970 2.2569 -4.4937 18 6 3.9989 3.4482 1.4157 19 6 3.3165 4.5954 1.7752 20 6 3.3850 5.0617 3.0748 21 6 4.1426 4.3854 4.0127 22 6 4.8291 3.2412 3.6518 23 6 4.7575 2.7727 2.3533 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.7399 3.9168 -0.6103 30 1 5.9627 2.2516 -0.0214 31 1 5.2669 2.5400 -1.6342 32 1 3.3884 4.7770 -0.7558 33 1 2.5360 2.3518 -2.1980 34 1 3.9519 3.3390 -2.6323 35 1 0.8775 4.6960 -5.9215 36 1 2.7270 5.1254 1.0417 37 1 2.8490 5.9559 3.3567 38 1 4.1984 4.7512 5.0274 39 1 5.4214 2.7131 4.3844 40 1 5.2942 1.8790 2.0712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887127461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -54.342312 kcal Electronic energy + Delta-G solvation = -22249.799768 eV Core-core repulsion = 19029.824967 eV Total energy + Delta-G solvation = -3219.974801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68756 -39.01635 -36.69178 -35.98135 -32.92996 -31.40083 -31.31704 -30.73593 -28.88036 -26.80070 -24.93159 -23.10575 -22.46289 -21.79649 -21.20108 -19.49611 -17.54723 -17.35208 -16.56772 -16.11101 -15.94165 -15.04538 -14.70355 -14.52655 -13.95217 -13.89190 -13.55097 -13.35553 -13.17765 -13.07004 -12.65185 -12.60390 -12.33803 -11.95164 -11.75917 -11.62880 -11.57805 -11.33584 -11.05674 -10.96105 -10.69887 -10.50401 -10.20669 -10.09805 -9.90467 -9.36243 -8.81644 -8.68439 -8.62416 -7.72332 -6.10449 -4.08307 1.36401 1.51112 2.52082 3.01411 3.25172 3.32628 3.35326 3.87616 4.37587 4.53640 4.79586 4.93092 5.05768 5.11212 5.13307 5.20647 5.22816 5.23875 5.30246 5.43229 5.58389 5.70141 5.78435 5.86923 5.92945 5.98374 6.05465 6.15555 6.21072 6.26833 6.51511 6.57918 6.63556 6.73867 6.78322 6.90885 7.08289 7.42696 7.68827 8.06056 8.14255 8.55156 8.96862 9.50948 11.02524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.006335 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.688246 B = 4418.790611 C = 5077.665094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.323 6.323 4 C 0.491 3.509 5 O -0.522 6.522 6 C 0.159 3.841 7 C -0.169 4.169 8 N -0.654 5.654 9 C 0.158 3.842 10 C -0.511 4.511 11 H 0.082 0.918 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.870 3.130 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.074 4.074 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.348 0.652 33 H 0.023 0.977 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -4.785 15.289 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.238 6.238 4 C 0.334 3.666 5 O -0.410 6.410 6 C 0.066 3.934 7 C -0.227 4.227 8 N -0.287 5.287 9 C 0.031 3.969 10 C -0.550 4.550 11 H 0.100 0.900 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.697 3.303 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.193 1.193 18 C -0.075 4.075 19 C -0.104 4.104 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.131 4.131 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.041 0.959 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.608 -5.375 15.279 16.839 hybrid contribution 1.221 -0.824 -0.980 1.769 sum 5.829 -6.199 14.299 16.639 Atomic orbital electron populations 1.21769 0.92621 1.02337 1.04074 1.23001 0.95709 0.81184 1.01801 1.86723 1.23688 1.30756 1.82632 1.23326 0.80926 0.91432 0.70877 1.90597 1.60910 1.42704 1.46835 1.19532 0.92286 0.88586 0.93042 1.22438 0.94907 1.03071 1.02321 1.60782 1.49188 1.04582 1.14189 1.20166 0.95753 0.97182 0.83787 1.20918 1.28649 1.11455 0.93948 0.89968 1.24833 0.94816 0.96109 0.97164 1.69882 1.37240 1.37340 1.09102 0.86943 0.80431 0.83793 0.79137 1.20091 1.20995 1.19302 1.19463 0.98429 0.96479 0.93092 1.21245 0.97150 0.95409 0.96546 1.21194 0.99408 1.00186 0.93369 1.21155 0.97629 0.95801 0.99338 1.21020 1.00399 0.97038 0.95894 1.21068 0.98792 0.99951 0.93300 0.91544 0.90844 0.90772 0.91643 0.91875 0.90931 0.91255 0.90998 0.83171 0.95875 0.98908 0.92576 0.83905 0.85877 0.86352 0.86263 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.29 37.16 0.38 -1.58 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.32 -6.26 9.28 -39.26 -0.36 -6.63 16 4 C 0.49 9.54 5.16 36.01 0.19 9.73 16 5 O -0.52 -10.44 15.84 -18.75 -0.30 -10.73 16 6 C 0.16 2.83 0.76 -133.90 -0.10 2.73 16 7 C -0.17 -2.79 7.58 37.15 0.28 -2.51 16 8 N -0.65 -13.07 4.87 -103.58 -0.50 -13.57 16 9 C 0.16 3.78 3.78 -4.97 -0.02 3.76 16 10 C -0.51 -14.21 9.87 -34.44 -0.34 -14.55 16 11 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 14 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 18 C -0.07 -1.15 4.76 -104.62 -0.50 -1.65 16 19 C -0.09 -1.24 9.14 -39.58 -0.36 -1.60 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 21 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.13 -1.49 10.05 -39.59 -0.40 -1.89 16 23 C -0.11 -1.58 8.82 -39.58 -0.35 -1.93 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.06 7.12 -51.93 -0.37 0.69 16 31 H 0.07 1.31 6.40 -51.93 -0.33 0.98 16 32 H 0.35 6.47 7.53 -39.29 -0.30 6.17 16 33 H 0.02 0.59 6.07 -51.93 -0.31 0.27 16 34 H -0.01 -0.16 5.36 -51.93 -0.28 -0.44 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.14 2.13 6.40 -52.49 -0.34 1.79 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.70 7.58 -52.49 -0.40 1.30 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -31.59 329.95 -7.69 -39.28 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.72 Total: 6.11 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.88 Total: -10.03 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.27 Total: -39.88 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.66 Total: -17.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.59 -7.69 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887127461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.060 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds