Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47029 * 2 1 4 4 C 1.34229 * 116.99895 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99910 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99929 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47082 * 204.99775 * 6 4 3 8 8 N 1.46906 * 109.47119 * 324.99690 * 6 4 3 9 9 C 1.46901 * 110.99793 * 300.00230 * 8 6 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.50700 * 109.47049 * 84.99718 * 6 4 3 19 19 C 1.38242 * 119.99609 * 239.72475 * 18 6 4 20 20 C 1.38239 * 119.99543 * 179.80920 * 19 18 6 21 21 C 1.38238 * 119.99970 * 0.40618 * 20 19 18 22 22 C 1.38230 * 120.00022 * 359.84595 * 21 20 19 23 23 C 1.38234 * 120.00431 * 359.96425 * 22 21 20 24 24 H 1.08993 * 109.47295 * 300.00044 * 1 2 3 25 25 H 1.09000 * 109.46880 * 60.00353 * 1 2 3 26 26 H 1.08999 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47608 * 239.99905 * 2 1 3 28 28 H 1.09001 * 109.47324 * 119.99940 * 2 1 3 29 29 H 1.09005 * 109.47374 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47167 * 299.99879 * 7 6 4 31 31 H 1.09006 * 109.47425 * 60.00077 * 7 6 4 32 32 H 1.00899 * 110.99995 * 176.04628 * 8 6 4 33 33 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 34 34 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 35 35 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 36 36 H 1.08000 * 120.00404 * 0.02562 * 19 18 6 37 37 H 1.08001 * 120.00121 * 180.22820 * 20 19 18 38 38 H 1.08000 * 120.00120 * 179.83469 * 21 20 19 39 39 H 1.08002 * 120.00276 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00531 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.3234 2.9094 -0.6102 8 7 3.0591 3.8241 -0.7935 9 6 2.9592 3.3561 -2.1824 10 6 2.0691 4.2880 -2.9637 11 1 1.6226 5.1426 -2.4772 12 6 1.8256 4.0501 -4.2998 13 7 1.0491 4.8636 -4.9816 14 14 2.5985 2.5723 -5.1413 15 1 1.6896 1.4039 -5.0231 16 1 2.8230 2.8814 -6.5763 17 1 3.8970 2.2569 -4.4937 18 6 3.9989 3.4482 1.4157 19 6 3.3165 4.5954 1.7752 20 6 3.3850 5.0617 3.0748 21 6 4.1426 4.3854 4.0127 22 6 4.8291 3.2412 3.6518 23 6 4.7575 2.7727 2.3533 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.7399 3.9168 -0.6103 30 1 5.9627 2.2516 -0.0214 31 1 5.2669 2.5400 -1.6342 32 1 3.3884 4.7770 -0.7558 33 1 2.5360 2.3518 -2.1980 34 1 3.9519 3.3390 -2.6323 35 1 0.8775 4.6960 -5.9215 36 1 2.7270 5.1254 1.0417 37 1 2.8490 5.9559 3.3567 38 1 4.1984 4.7512 5.0274 39 1 5.4214 2.7131 4.3844 40 1 5.2942 1.8790 2.0712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887127461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -73.347830 kcal Electronic energy + Delta-G solvation = -22250.623909 eV Core-core repulsion = 19029.824967 eV Total energy + Delta-G solvation = -3220.798942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08532 -40.16899 -38.06563 -37.50340 -34.93949 -32.86112 -32.57376 -31.79199 -30.19238 -28.58622 -26.33433 -24.47362 -23.67177 -22.98329 -22.75270 -20.89286 -19.33999 -18.71224 -18.19765 -17.51634 -17.18337 -16.54537 -16.20453 -15.67187 -15.61610 -15.18469 -14.92136 -14.90048 -14.54880 -14.41011 -14.14768 -13.71792 -13.60056 -13.35997 -13.23147 -13.06740 -12.91221 -12.66752 -12.55108 -12.46951 -12.18800 -11.96708 -11.77569 -11.56389 -11.53049 -11.40985 -10.83675 -9.81014 -9.71898 -9.35811 -8.32603 -6.35091 0.33703 0.51883 1.05295 1.27974 1.29695 1.38842 1.69730 2.28328 2.84661 3.01049 3.10912 3.50094 3.66748 3.90624 3.95309 4.03798 4.11007 4.19330 4.25987 4.33168 4.49427 4.51996 4.65695 4.67116 4.72926 4.80665 4.87596 4.87874 5.02612 5.05717 5.11979 5.19343 5.39151 5.45084 5.56241 5.60893 5.65591 5.83567 6.11415 6.40413 6.43067 6.70202 6.71809 7.28205 8.83644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.006335 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.688246 B = 4418.790611 C = 5077.665094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.344 6.344 4 C 0.485 3.515 5 O -0.534 6.534 6 C 0.159 3.841 7 C -0.164 4.164 8 N -0.656 5.656 9 C 0.174 3.826 10 C -0.516 4.516 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.939 5.939 14 Si 0.930 3.070 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.092 4.092 19 C -0.103 4.103 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.123 4.123 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.354 0.646 33 H 0.011 0.989 34 H -0.005 1.005 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -5.687 17.377 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 O -0.259 6.259 4 C 0.329 3.671 5 O -0.424 6.424 6 C 0.066 3.934 7 C -0.223 4.223 8 N -0.289 5.289 9 C 0.046 3.954 10 C -0.555 4.555 11 H 0.068 0.932 12 C -0.178 4.178 13 N -0.580 5.580 14 Si 0.754 3.246 15 H -0.195 1.195 16 H -0.200 1.200 17 H -0.182 1.182 18 C -0.093 4.093 19 C -0.121 4.121 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.175 0.825 33 H 0.029 0.971 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.649 -6.274 17.386 19.328 hybrid contribution 0.853 -0.499 -1.489 1.787 sum 6.502 -6.773 15.897 18.463 Atomic orbital electron populations 1.21796 0.90676 1.04336 1.03316 1.23333 0.97306 0.79745 1.02268 1.86713 1.23768 1.32988 1.82468 1.23674 0.80988 0.91970 0.70514 1.90569 1.61076 1.43167 1.47573 1.19627 0.92048 0.87402 0.94327 1.22407 0.94596 1.04232 1.01049 1.60584 1.50874 1.05350 1.12140 1.19819 0.94607 0.95426 0.85549 1.21150 1.28786 1.11093 0.94429 0.93223 1.25625 0.95336 0.98916 0.97951 1.70008 1.38919 1.39372 1.09668 0.85972 0.79956 0.80254 0.78393 1.19490 1.19975 1.18241 1.19336 1.00366 0.97563 0.91994 1.21234 0.97690 0.95540 0.97662 1.21482 0.99320 1.00865 0.92405 1.21569 0.95953 0.94915 1.00631 1.21376 1.00063 0.97151 0.95332 1.21122 0.98929 0.99966 0.94146 0.91007 0.92800 0.87378 0.92248 0.90300 0.89385 0.89994 0.93042 0.82457 0.97086 0.98710 0.92278 0.85321 0.83647 0.82882 0.83406 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 10.29 71.98 0.74 -2.86 16 2 C 0.05 1.44 6.19 71.98 0.45 1.89 16 3 O -0.34 -13.43 9.28 -51.41 -0.48 -13.91 16 4 C 0.48 18.84 5.16 71.24 0.37 19.21 16 5 O -0.53 -21.23 15.84 21.98 0.35 -20.88 16 6 C 0.16 5.66 0.76 2.03 0.00 5.67 16 7 C -0.16 -5.36 7.58 71.98 0.55 -4.81 16 8 N -0.66 -26.74 4.87 -481.61 -2.34 -29.08 16 9 C 0.17 8.43 3.78 85.56 0.32 8.76 16 10 C -0.52 -29.53 9.87 25.60 0.25 -29.27 16 11 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 12 C 0.02 1.17 5.47 84.66 0.46 1.64 16 13 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 14 Si 0.93 44.74 27.47 68.60 1.88 46.63 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 18 C -0.09 -2.80 4.76 -19.86 -0.09 -2.89 16 19 C -0.10 -2.91 9.14 22.27 0.20 -2.71 16 20 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 21 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 23 C -0.12 -3.25 8.82 22.27 0.20 -3.05 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 28 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 29 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 30 H 0.08 2.43 7.12 -2.39 -0.02 2.42 16 31 H 0.05 1.87 6.40 -2.38 -0.02 1.85 16 32 H 0.35 13.54 7.53 -89.69 -0.68 12.87 16 33 H 0.01 0.57 6.07 -2.39 -0.01 0.56 16 34 H 0.00 -0.22 5.36 -2.39 -0.01 -0.23 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.13 3.91 6.40 -2.91 -0.02 3.89 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.12 3.14 7.58 -2.91 -0.02 3.12 16 Total: -1.00 -69.18 329.95 4.13 -65.04 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.31 Total: 24.93 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.12 Total: -15.03 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.04 Total: -86.77 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.13 Total: -34.79 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -69.18 4.13 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887127461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.305 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds