Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99713 * 2 1 4 4 C 1.52997 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47024 * 64.99925 * 4 3 2 6 6 C 1.36938 * 119.99980 * 269.99999 * 5 4 3 7 7 H 1.08000 * 120.00116 * 142.07855 * 6 5 4 8 8 C 1.38812 * 119.99919 * 322.07003 * 6 5 4 9 9 N 1.31616 * 119.99927 * 158.93144 * 8 6 5 10 10 Si 1.86800 * 120.00282 * 338.93845 * 8 6 5 11 11 H 1.48500 * 109.47277 * 95.38017 * 10 8 6 12 12 H 1.48503 * 109.47084 * 215.38459 * 10 8 6 13 13 H 1.48501 * 109.47031 * 335.38213 * 10 8 6 14 14 C 1.46499 * 120.00060 * 90.00140 * 5 4 3 15 15 C 1.50696 * 109.47586 * 92.56692 * 14 5 4 16 16 C 1.37971 * 119.88327 * 259.59215 * 15 14 5 17 17 C 1.38253 * 120.35010 * 179.97438 * 16 15 14 18 18 C 1.38399 * 119.76506 * 359.78379 * 17 16 15 19 19 C 1.37694 * 119.97916 * 0.03950 * 18 17 16 20 20 C 1.38926 * 120.78394 * 0.32429 * 19 18 17 21 21 O 1.36381 * 111.31598 * 179.09498 * 20 19 18 22 22 C 1.43770 * 109.09870 * 18.75153 * 21 20 19 23 23 C 1.51645 * 132.18415 * 180.35239 * 19 18 17 24 24 H 1.08997 * 109.47393 * 299.99589 * 1 2 3 25 25 H 1.08995 * 109.46962 * 60.00129 * 1 2 3 26 26 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47225 * 59.99841 * 3 2 1 28 28 H 1.08998 * 109.46793 * 300.00132 * 3 2 1 29 29 H 1.09001 * 109.47421 * 305.00198 * 4 3 2 30 30 H 1.09003 * 109.47212 * 184.99991 * 4 3 2 31 31 H 0.96996 * 120.00599 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.46992 * 332.57074 * 14 5 4 33 33 H 1.08995 * 109.47228 * 212.57134 * 14 5 4 34 34 H 1.07997 * 119.82679 * 359.97357 * 16 15 14 35 35 H 1.07995 * 120.11600 * 179.83238 * 17 16 15 36 36 H 1.07997 * 120.00588 * 180.02562 * 18 17 16 37 37 H 1.09004 * 110.74770 * 214.07734 * 22 21 20 38 38 H 1.09005 * 110.74607 * 90.91692 * 22 21 20 39 39 H 1.09004 * 110.93578 * 46.43522 * 23 19 18 40 40 H 1.08998 * 110.97014 * 282.77282 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.8179 -1.3097 -2.2430 8 6 4.5805 -1.5190 -0.2513 9 7 4.3225 -2.8056 -0.1501 10 14 5.5963 -0.6640 1.0627 11 1 4.7136 -0.2617 2.1871 12 1 6.6422 -1.5925 1.5621 13 1 6.2407 0.5421 0.4835 14 6 4.2882 1.3999 -2.4130 15 6 5.7590 1.7282 -2.4159 16 6 6.1898 2.9577 -1.9618 17 6 7.5368 3.2689 -1.9597 18 6 8.4574 2.3395 -2.4115 19 6 8.0300 1.1104 -2.8617 20 6 6.6785 0.7890 -2.8757 21 8 6.4718 -0.4632 -3.3751 22 6 7.7032 -1.2027 -3.3150 23 6 8.7785 -0.0937 -3.3998 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1767 0.0902 31 1 4.6594 -3.3098 0.6069 32 1 3.7102 2.3226 -2.3624 33 1 4.0343 0.8617 -3.3262 34 1 5.4709 3.6810 -1.6062 35 1 7.8696 4.2335 -1.6060 36 1 9.5106 2.5783 -2.4112 37 1 7.7853 -1.8855 -4.1607 38 1 7.7819 -1.7458 -2.3732 39 1 9.6354 -0.3329 -2.7700 40 1 9.0894 0.0695 -4.4317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894808273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -36.995836 kcal Electronic energy + Delta-G solvation = -22660.872787 eV Core-core repulsion = 19441.650186 eV Total energy + Delta-G solvation = -3219.222601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82714 -39.08173 -38.29015 -37.08515 -34.09534 -33.28360 -31.67411 -30.14672 -30.03972 -27.41516 -27.11438 -24.71141 -24.08488 -23.18313 -22.52463 -21.23383 -18.70612 -18.13038 -17.63232 -17.33695 -17.13370 -16.90696 -16.39151 -16.13382 -15.71395 -15.54564 -14.86075 -14.81836 -14.42735 -14.18756 -13.92502 -13.79925 -13.51710 -13.29060 -13.01684 -12.90960 -12.60445 -12.46071 -12.37067 -12.27238 -11.97717 -11.81040 -11.63380 -11.60967 -11.36452 -10.55589 -10.34070 -9.55515 -8.87067 -8.67699 -8.03446 -5.37576 0.48271 0.59843 1.26055 1.35916 1.47387 2.49564 2.58573 2.91176 3.16335 3.22145 3.57712 3.61801 3.75714 4.07311 4.18244 4.21464 4.33654 4.42002 4.44889 4.51624 4.56327 4.59883 4.62117 4.64571 4.67313 4.70504 4.83554 4.88701 4.90101 4.93079 4.99980 5.12532 5.31590 5.56731 5.61657 5.73111 5.93438 6.08346 6.30343 6.48051 6.61014 7.11526 7.76546 8.14317 9.18242 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.007581 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.841130 B = 3692.571680 C = 4230.272353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.050 3.950 4 C 0.127 3.873 5 N -0.600 5.600 6 C -0.191 4.191 7 H 0.029 0.971 8 C -0.011 4.011 9 N -0.955 5.955 10 Si 0.926 3.074 11 H -0.282 1.282 12 H -0.321 1.321 13 H -0.260 1.260 14 C 0.189 3.811 15 C -0.135 4.135 16 C -0.092 4.092 17 C -0.154 4.154 18 C -0.086 4.086 19 C -0.202 4.202 20 C 0.097 3.903 21 O -0.318 6.318 22 C 0.042 3.958 23 C -0.095 4.095 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 14.103 -3.584 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C -0.029 4.029 4 C 0.002 3.998 5 N -0.321 5.321 6 C -0.322 4.322 7 H 0.047 0.953 8 C -0.206 4.206 9 N -0.601 5.601 10 Si 0.758 3.242 11 H -0.210 1.210 12 H -0.250 1.250 13 H -0.185 1.185 14 C 0.064 3.936 15 C -0.138 4.138 16 C -0.111 4.111 17 C -0.172 4.172 18 C -0.104 4.104 19 C -0.203 4.203 20 C 0.051 3.949 21 O -0.231 6.231 22 C -0.033 4.033 23 C -0.131 4.131 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.939 13.696 -3.609 15.000 hybrid contribution 0.288 -0.495 0.844 1.020 sum 5.228 13.200 -2.765 14.465 Atomic orbital electron populations 1.22786 0.81315 1.02399 1.00234 1.88229 1.19913 1.28637 1.95248 1.23223 0.95350 0.84467 0.99866 1.21428 0.92444 0.97343 0.88566 1.44210 1.75599 1.02373 1.09909 1.18189 1.33130 0.81464 0.99379 0.95341 1.25733 0.99720 0.95068 1.00045 1.69981 1.48908 1.09322 1.31933 0.86101 0.79241 0.78396 0.80466 1.21014 1.25045 1.18473 1.19898 0.89212 0.94540 0.89929 1.20357 0.97921 0.93971 1.01597 1.21073 0.97185 0.94669 0.98127 1.21345 0.92437 1.00715 1.02669 1.20572 1.00978 0.91145 0.97689 1.21220 0.93844 0.98519 1.06701 1.19844 0.94431 0.86004 0.94608 1.86977 1.35752 1.23046 1.77365 1.23915 0.81467 0.95127 1.02830 1.21762 0.97937 0.90133 1.03309 0.93007 0.93620 0.90738 0.92194 0.92704 0.95176 0.89276 0.93806 0.89775 0.94571 0.83343 0.82581 0.83430 0.85934 0.93350 0.87889 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -18.05 10.18 -148.98 -1.52 -19.57 16 3 C 0.05 1.83 6.28 71.98 0.45 2.28 16 4 C 0.13 5.37 4.91 86.38 0.42 5.79 16 5 N -0.60 -28.69 2.04 -706.34 -1.44 -30.13 16 6 C -0.19 -11.26 9.06 84.03 0.76 -10.50 16 7 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 8 C -0.01 -0.69 5.32 84.86 0.45 -0.24 16 9 N -0.95 -63.20 13.97 21.65 0.30 -62.90 16 10 Si 0.93 49.55 24.97 68.60 1.71 51.27 16 11 H -0.28 -14.57 6.69 99.48 0.67 -13.90 16 12 H -0.32 -17.61 7.11 99.48 0.71 -16.91 16 13 H -0.26 -13.39 7.11 99.48 0.71 -12.68 16 14 C 0.19 7.66 5.76 85.63 0.49 8.16 16 15 C -0.14 -5.22 5.47 -19.69 -0.11 -5.33 16 16 C -0.09 -2.79 9.63 22.21 0.21 -2.57 16 17 C -0.15 -4.03 10.07 22.31 0.22 -3.81 16 18 C -0.09 -2.37 10.03 22.18 0.22 -2.15 16 19 C -0.20 -6.79 6.27 -19.53 -0.12 -6.91 16 20 C 0.10 3.99 6.76 22.68 0.15 4.14 16 21 O -0.32 -14.28 10.71 -97.92 -1.05 -15.33 16 22 C 0.04 1.46 8.00 72.56 0.58 2.04 16 23 C -0.09 -2.62 7.12 30.73 0.22 -2.41 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.03 1.47 3.21 -2.39 -0.01 1.47 16 30 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 31 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16 32 H 0.08 2.73 7.90 -2.38 -0.02 2.71 16 33 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 34 H 0.15 3.53 8.02 -2.91 -0.02 3.51 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -79.38 329.49 4.19 -75.18 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.97 Total: 10.78 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.21 Total: -9.29 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -1.14 Total: -93.03 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -2.56 Total: -34.90 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.71 Total: 51.27 kcal Total: -79.38 4.19 -75.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894808273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.186 kcal (2) G-P(sol) polarization free energy of solvation -79.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds