Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00230 * 2 1 4 4 C 1.46906 * 111.00129 * 123.95244 * 2 1 3 5 5 C 1.52996 * 109.47054 * 170.00093 * 4 2 1 6 6 C 1.52999 * 109.47209 * 179.97438 * 5 4 2 7 7 O 1.45202 * 109.47398 * 180.02562 * 6 5 4 8 8 C 1.34708 * 116.99988 * 180.02562 * 7 6 5 9 9 O 1.21465 * 120.00087 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.39966 * 120.02752 * 359.97438 * 10 8 7 12 12 C 1.38311 * 120.35000 * 180.02562 * 11 10 8 13 13 C 1.37761 * 120.42100 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05029 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.18092 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99456 * 24.42404 * 15 14 13 17 17 C 1.39932 * 120.00288 * 204.42465 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.83811 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.83727 * 17 15 14 20 20 H 1.48493 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48497 * 109.46825 * 210.00040 * 19 17 15 22 22 H 1.48496 * 109.47026 * 330.00010 * 19 17 15 23 23 C 1.39043 * 120.02867 * 179.97438 * 10 8 7 24 24 H 1.09004 * 109.47218 * 296.04629 * 1 2 3 25 25 H 1.08997 * 109.47493 * 56.04524 * 1 2 3 26 26 H 1.09002 * 109.47235 * 176.04610 * 1 2 3 27 27 H 1.08994 * 109.47335 * 183.95375 * 3 2 1 28 28 H 1.09003 * 109.46822 * 303.95616 * 3 2 1 29 29 H 1.09005 * 109.46788 * 63.95013 * 3 2 1 30 30 H 1.08996 * 109.46942 * 49.99694 * 4 2 1 31 31 H 1.09004 * 109.46868 * 289.99977 * 4 2 1 32 32 H 1.09004 * 109.47333 * 60.00199 * 5 4 2 33 33 H 1.08996 * 109.47247 * 300.00021 * 5 4 2 34 34 H 1.09004 * 109.46622 * 59.99994 * 6 5 4 35 35 H 1.08996 * 109.47222 * 300.00268 * 6 5 4 36 36 H 1.07996 * 119.82893 * 0.02562 * 11 10 8 37 37 H 1.08008 * 119.79362 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.97658 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.21032 * 359.70694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 6 4.0529 -1.7525 2.1555 7 8 5.4850 -1.9317 1.9971 8 6 6.1259 -2.6185 2.9625 9 8 5.5055 -3.0554 3.9110 10 6 7.5838 -2.8405 2.8678 11 6 8.2992 -2.3378 1.7748 12 6 9.6638 -2.5421 1.6791 13 6 10.3347 -3.2419 2.6579 14 6 9.6323 -3.7551 3.7645 15 6 10.3183 -4.4744 4.7707 16 1 11.3748 -4.3122 4.9253 17 6 9.6281 -5.3961 5.5658 18 7 8.4663 -5.8548 5.1769 19 14 10.3657 -5.9715 7.1828 20 1 9.9225 -5.0712 8.2772 21 1 9.9136 -7.3570 7.4677 22 1 11.8474 -5.9439 7.0885 23 6 8.2460 -3.5489 3.8642 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0827 1.3432 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5089 -1.7406 1.1757 31 1 1.7975 -0.2247 2.0628 32 1 3.9909 0.0194 0.9323 33 1 3.7023 -1.4965 0.0452 34 1 3.5664 -2.7272 2.1939 35 1 3.8549 -1.2109 3.0804 36 1 7.7831 -1.7874 1.0022 37 1 10.2071 -2.1498 0.8320 38 1 11.4003 -3.3975 2.5757 39 1 7.9881 -6.4940 5.7279 40 1 7.6990 -3.9347 4.7118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915804057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -73.929544 kcal Electronic energy + Delta-G solvation = -20519.996153 eV Core-core repulsion = 17299.171985 eV Total energy + Delta-G solvation = -3220.824167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75551 -38.00909 -37.34017 -35.79821 -33.76922 -32.55024 -30.29533 -29.50814 -27.87549 -26.74047 -25.35413 -23.53246 -22.21958 -21.02006 -20.98322 -19.73017 -17.81652 -16.59026 -16.38492 -16.01297 -15.49690 -15.45137 -14.93328 -14.87098 -14.58701 -14.04237 -13.48448 -13.27639 -12.69950 -12.69213 -12.66534 -12.46812 -12.06941 -11.99798 -11.71460 -11.66858 -11.28308 -11.21678 -11.14297 -10.95826 -10.75163 -10.52883 -10.18366 -10.13187 -9.73161 -9.47245 -9.25462 -8.66217 -7.74910 -7.56589 -6.83729 -4.44668 1.98317 2.77355 3.05928 3.09181 3.12203 3.13115 3.60513 3.77995 3.89423 4.57005 4.71878 4.84892 4.90860 5.09406 5.11234 5.23061 5.30935 5.35068 5.43391 5.51809 5.53804 5.56648 5.65417 5.77062 5.99286 6.07946 6.16264 6.40534 6.64037 6.71452 6.72700 6.92980 6.95374 7.00259 7.16331 7.30573 7.67898 7.75036 7.90248 8.09646 8.43487 8.56722 8.76154 8.78223 10.11632 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.003160 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.748981 B = 8857.801985 C = 9604.139701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.019 3.981 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.068 3.932 7 O -0.355 6.355 8 C 0.512 3.488 9 O -0.519 6.519 10 C -0.115 4.115 11 C -0.193 4.193 12 C -0.104 4.104 13 C -0.202 4.202 14 C 0.095 3.905 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.089 4.089 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 8.804 -6.351 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.007 4.007 7 O -0.273 6.273 8 C 0.359 3.641 9 O -0.409 6.409 10 C -0.116 4.116 11 C -0.213 4.213 12 C -0.122 4.122 13 C -0.222 4.222 14 C 0.092 3.908 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.411 5.411 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.109 4.109 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.197 8.274 -6.443 15.341 hybrid contribution -0.234 0.015 1.510 1.528 sum -11.431 8.290 -4.933 14.957 Atomic orbital electron populations 1.22384 0.87151 1.02388 1.00469 1.61928 1.07886 1.14144 1.43150 1.22479 1.01513 0.88542 1.00403 1.22015 0.94981 0.98646 0.91426 1.21511 0.94033 1.01210 0.98592 1.22801 0.78831 1.00480 0.98628 1.86577 1.22575 1.69282 1.48858 1.21878 0.89371 0.73846 0.78999 1.90756 1.68555 1.48485 1.33084 1.18839 0.87026 1.06065 0.99709 1.20567 0.94189 1.07336 0.99211 1.20514 0.93904 0.99646 0.98148 1.21185 0.98812 1.06466 0.95692 1.17549 0.91229 0.90608 0.91372 1.19575 0.96992 1.18680 1.13649 0.89916 1.25969 0.94519 0.95025 0.99095 1.69780 1.12931 1.22505 1.35889 0.86249 0.80363 0.78273 0.81523 1.19158 1.20218 1.18530 1.21655 0.95083 0.96506 0.97647 0.95664 0.91300 0.91238 0.90700 0.91403 0.95592 0.90302 0.94423 0.90770 0.89820 0.91503 0.91814 0.87838 0.88513 0.88335 0.90415 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.57 60.06 0.57 0.76 16 2 N -0.55 -5.29 5.02 -251.26 -1.26 -6.55 16 3 C 0.02 0.16 9.32 60.07 0.56 0.72 16 4 C 0.06 0.57 4.96 -3.82 -0.02 0.56 16 5 C -0.12 -1.36 5.52 -26.73 -0.15 -1.50 16 6 C 0.07 1.01 5.48 37.16 0.20 1.21 16 7 O -0.36 -6.79 9.46 -40.51 -0.38 -7.17 16 8 C 0.51 11.68 7.90 34.63 0.27 11.96 16 9 O -0.52 -12.85 16.12 -19.24 -0.31 -13.16 16 10 C -0.12 -2.80 5.87 -105.05 -0.62 -3.42 16 11 C -0.19 -4.29 9.62 -38.91 -0.37 -4.66 16 12 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 13 C -0.20 -4.77 9.78 -38.80 -0.38 -5.15 16 14 C 0.09 2.50 5.57 -106.87 -0.60 1.90 16 15 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 18 N -0.79 -20.66 10.96 55.55 0.61 -20.05 16 19 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.09 -2.38 8.23 -38.43 -0.32 -2.70 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.07 0.65 6.47 -51.93 -0.34 0.31 16 28 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 31 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 37 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 40 H 0.14 3.84 5.75 -52.49 -0.30 3.54 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -28.91 338.41 -8.93 -37.84 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.99 Total: 3.96 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.67 Total: -13.55 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: -0.65 Total: -26.60 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.69 Total: -20.33 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.91 -8.93 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915804057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.090 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds