Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00230 * 2 1 4 4 C 1.46906 * 111.00129 * 123.95244 * 2 1 3 5 5 C 1.52996 * 109.47054 * 170.00093 * 4 2 1 6 6 C 1.52999 * 109.47209 * 179.97438 * 5 4 2 7 7 O 1.45202 * 109.47398 * 180.02562 * 6 5 4 8 8 C 1.34708 * 116.99988 * 180.02562 * 7 6 5 9 9 O 1.21465 * 120.00087 * 359.97438 * 8 7 6 10 10 C 1.47771 * 119.99877 * 179.97438 * 8 7 6 11 11 C 1.39966 * 120.02752 * 359.97438 * 10 8 7 12 12 C 1.38311 * 120.35000 * 180.02562 * 11 10 8 13 13 C 1.37761 * 120.42100 * 359.97438 * 12 11 10 14 14 C 1.40756 * 120.05029 * 0.02562 * 13 12 11 15 15 C 1.41434 * 120.18092 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99456 * 24.42404 * 15 14 13 17 17 C 1.39932 * 120.00288 * 204.42465 * 15 14 13 18 18 N 1.30824 * 120.00201 * 17.83811 * 17 15 14 19 19 Si 1.86806 * 119.99927 * 197.83727 * 17 15 14 20 20 H 1.48493 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48497 * 109.46825 * 210.00040 * 19 17 15 22 22 H 1.48496 * 109.47026 * 330.00010 * 19 17 15 23 23 C 1.39043 * 120.02867 * 179.97438 * 10 8 7 24 24 H 1.09004 * 109.47218 * 296.04629 * 1 2 3 25 25 H 1.08997 * 109.47493 * 56.04524 * 1 2 3 26 26 H 1.09002 * 109.47235 * 176.04610 * 1 2 3 27 27 H 1.08994 * 109.47335 * 183.95375 * 3 2 1 28 28 H 1.09003 * 109.46822 * 303.95616 * 3 2 1 29 29 H 1.09005 * 109.46788 * 63.95013 * 3 2 1 30 30 H 1.08996 * 109.46942 * 49.99694 * 4 2 1 31 31 H 1.09004 * 109.46868 * 289.99977 * 4 2 1 32 32 H 1.09004 * 109.47333 * 60.00199 * 5 4 2 33 33 H 1.08996 * 109.47247 * 300.00021 * 5 4 2 34 34 H 1.09004 * 109.46622 * 59.99994 * 6 5 4 35 35 H 1.08996 * 109.47222 * 300.00268 * 6 5 4 36 36 H 1.07996 * 119.82893 * 0.02562 * 11 10 8 37 37 H 1.08008 * 119.79362 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.97658 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00007 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.21032 * 359.70694 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 6 4.0529 -1.7525 2.1555 7 8 5.4850 -1.9317 1.9971 8 6 6.1259 -2.6185 2.9625 9 8 5.5055 -3.0554 3.9110 10 6 7.5838 -2.8405 2.8678 11 6 8.2992 -2.3378 1.7748 12 6 9.6638 -2.5421 1.6791 13 6 10.3347 -3.2419 2.6579 14 6 9.6323 -3.7551 3.7645 15 6 10.3183 -4.4744 4.7707 16 1 11.3748 -4.3122 4.9253 17 6 9.6281 -5.3961 5.5658 18 7 8.4663 -5.8548 5.1769 19 14 10.3657 -5.9715 7.1828 20 1 9.9225 -5.0712 8.2772 21 1 9.9136 -7.3570 7.4677 22 1 11.8474 -5.9439 7.0885 23 6 8.2460 -3.5489 3.8642 24 1 -0.3634 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0827 1.3432 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5089 -1.7406 1.1757 31 1 1.7975 -0.2247 2.0628 32 1 3.9909 0.0194 0.9323 33 1 3.7023 -1.4965 0.0452 34 1 3.5664 -2.7272 2.1939 35 1 3.8549 -1.2109 3.0804 36 1 7.7831 -1.7874 1.0022 37 1 10.2071 -2.1498 0.8320 38 1 11.4003 -3.3975 2.5757 39 1 7.9881 -6.4940 5.7279 40 1 7.6990 -3.9347 4.7118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915804057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -89.768671 kcal Electronic energy + Delta-G solvation = -20520.682989 eV Core-core repulsion = 17299.171985 eV Total energy + Delta-G solvation = -3221.511003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45785 -39.27171 -38.69496 -37.43213 -35.62869 -33.63284 -32.11467 -31.36238 -28.50213 -27.85138 -27.17580 -25.00405 -23.40910 -22.84041 -21.95412 -21.40025 -19.62512 -18.20699 -17.78297 -17.69354 -16.80686 -16.50383 -16.44588 -16.16237 -15.64256 -15.20154 -15.16766 -15.02216 -14.39328 -14.10273 -13.82809 -13.48940 -13.35991 -13.02523 -12.97772 -12.83814 -12.68161 -12.56834 -12.46138 -12.38362 -12.21412 -12.01519 -12.01248 -11.54565 -11.44999 -11.27692 -11.10485 -9.62383 -9.45170 -9.36259 -8.69197 -6.40289 0.12311 0.96246 1.37584 1.46398 1.52001 1.64067 1.79534 2.18832 2.71642 2.97892 3.62439 3.77756 3.85893 4.00052 4.11292 4.23733 4.34273 4.35950 4.44053 4.48852 4.60204 4.63390 4.69743 4.72886 4.84221 4.97638 5.01090 5.04473 5.06222 5.09592 5.13357 5.27648 5.36007 5.44883 5.81550 5.89193 6.00220 6.00786 6.05945 6.22571 6.52560 6.80252 6.86089 6.88611 8.28402 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.003160 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.748981 B = 8857.801985 C = 9604.139701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.561 5.561 3 C 0.017 3.983 4 C 0.061 3.939 5 C -0.102 4.102 6 C 0.062 3.938 7 O -0.349 6.349 8 C 0.515 3.485 9 O -0.547 6.547 10 C -0.130 4.130 11 C -0.181 4.181 12 C -0.099 4.099 13 C -0.203 4.203 14 C 0.065 3.935 15 C -0.493 4.493 16 H 0.088 0.912 17 C 0.029 3.971 18 N -0.826 5.826 19 Si 0.985 3.015 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.250 1.250 23 C -0.124 4.124 24 H 0.028 0.972 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.288 0.712 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 9.963 -7.614 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.285 5.285 3 C -0.131 4.131 4 C -0.067 4.067 5 C -0.140 4.140 6 C -0.013 4.013 7 O -0.266 6.266 8 C 0.363 3.637 9 O -0.440 6.440 10 C -0.131 4.131 11 C -0.200 4.200 12 C -0.117 4.117 13 C -0.223 4.223 14 C 0.062 3.938 15 C -0.522 4.522 16 H 0.106 0.894 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.173 1.173 23 C -0.144 4.144 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.150 9.458 -7.743 16.544 hybrid contribution -0.331 -0.222 1.721 1.767 sum -11.481 9.236 -6.022 15.918 Atomic orbital electron populations 1.22436 0.85939 1.02905 1.01155 1.61929 1.09088 1.14729 1.42771 1.22518 1.01306 0.88147 1.01095 1.21944 0.93599 0.99191 0.91956 1.21435 0.95189 1.00675 0.96712 1.23167 0.76385 1.01207 1.00505 1.86538 1.24888 1.67975 1.47188 1.21699 0.89121 0.73732 0.79140 1.90734 1.69085 1.49768 1.34382 1.19095 0.88211 1.05846 0.99934 1.20960 0.94644 1.05862 0.98529 1.20972 0.93825 0.98212 0.98648 1.21509 0.99775 1.05792 0.95223 1.17918 0.91527 0.91557 0.92754 1.19868 0.97500 1.19768 1.15091 0.89380 1.26876 0.94711 0.94723 1.02266 1.69872 1.14512 1.23440 1.37376 0.85157 0.79940 0.77810 0.76576 1.19083 1.19473 1.17304 1.21467 0.95637 0.99052 0.98199 0.95315 0.90185 0.90942 0.91122 0.90207 0.95352 0.89919 0.94097 0.90236 0.90060 0.91534 0.91511 0.84938 0.84045 0.86601 0.90154 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.57 127.69 1.22 1.53 16 2 N -0.56 -9.72 5.02 -948.84 -4.76 -14.48 16 3 C 0.02 0.26 9.32 127.69 1.19 1.45 16 4 C 0.06 1.12 4.96 86.30 0.43 1.55 16 5 C -0.10 -2.23 5.52 30.59 0.17 -2.06 16 6 C 0.06 1.79 5.48 71.98 0.39 2.18 16 7 O -0.35 -13.02 9.46 -56.18 -0.53 -13.55 16 8 C 0.52 23.75 7.90 70.34 0.56 24.30 16 9 O -0.55 -27.95 16.12 19.95 0.32 -27.63 16 10 C -0.13 -6.36 5.87 -20.14 -0.12 -6.48 16 11 C -0.18 -7.64 9.62 22.71 0.22 -7.42 16 12 C -0.10 -4.00 10.01 22.17 0.22 -3.77 16 13 C -0.20 -9.40 9.78 22.77 0.22 -9.18 16 14 C 0.06 3.48 5.57 -21.32 -0.12 3.36 16 15 C -0.49 -26.32 9.05 23.47 0.21 -26.10 16 16 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 17 C 0.03 1.50 5.14 85.25 0.44 1.94 16 18 N -0.83 -45.32 10.96 21.82 0.24 -45.08 16 19 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 23 C -0.12 -6.85 8.23 23.02 0.19 -6.66 16 24 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.08 0.88 8.12 -2.39 -0.02 0.87 16 26 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.07 1.09 6.47 -2.39 -0.02 1.08 16 28 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 29 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 31 H 0.04 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.08 1.67 6.55 -2.38 -0.02 1.65 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 37 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 40 H 0.11 6.38 5.75 -2.91 -0.02 6.36 16 Total: -1.00 -64.02 338.41 3.54 -60.48 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.02 Total: 24.76 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 5.22 Total: -25.36 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -4.52 Total: -59.56 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.21 Total: -41.18 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -64.02 3.54 -60.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915804057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.285 kcal (2) G-P(sol) polarization free energy of solvation -64.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds